A citation-based method for searching scientific literature


List of co-cited articles
360 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Shedding new light on opsin evolution.
Megan L Porter, Joseph R Blasic, Michael J Bok, Evan G Cameron, Thomas Pringle, Thomas W Cronin, Phyllis R Robinson. Proc Biol Sci 2012
159
47

Opsins in onychophora (velvet worms) suggest a single origin and subsequent diversification of visual pigments in arthropods.
Lars Hering, Miriam J Henze, Martin Kohler, Almut Kelber, Christoph Bleidorn, Maren Leschke, Birgit Nickel, Matthias Meyer, Martin Kircher, Paul Sunnucks,[...]. Mol Biol Evol 2012
40
39

Metazoan opsin evolution reveals a simple route to animal vision.
Roberto Feuda, Sinead C Hamilton, James O McInerney, Davide Pisani. Proc Natl Acad Sci U S A 2012
104
36

Characterisation and localisation of the opsin protein repertoire in the brain and retinas of a spider and an onychophoran.
Bo Joakim Eriksson, David Fredman, Gerhard Steiner, Axel Schmid. BMC Evol Biol 2013
34
35

The Last Common Ancestor of Most Bilaterian Animals Possessed at Least Nine Opsins.
M Desmond Ramirez, Autum N Pairett, M Sabrina Pankey, Jeanne M Serb, Daniel I Speiser, Andrew J Swafford, Todd H Oakley. Genome Biol Evol 2016
61
31


Ciliary photoreceptors with a vertebrate-type opsin in an invertebrate brain.
Detlev Arendt, Kristin Tessmar-Raible, Heidi Snyman, Adriaan W Dorresteijn, Joachim Wittbrodt. Science 2004
236
26

The comb jelly opsins and the origins of animal phototransduction.
Roberto Feuda, Omar Rota-Stabelli, Todd H Oakley, Davide Pisani. Genome Biol Evol 2014
37
27

The ecoresponsive genome of Daphnia pulex.
John K Colbourne, Michael E Pfrender, Donald Gilbert, W Kelley Thomas, Abraham Tucker, Todd H Oakley, Shinichi Tokishita, Andrea Aerts, Georg J Arnold, Malay Kumar Basu,[...]. Science 2011
775
26

The opsins.
Akihisa Terakita. Genome Biol 2005
323
26

Pteropsin: a vertebrate-like non-visual opsin expressed in the honey bee brain.
Rodrigo A Velarde, Colin D Sauer, Kimberly K O Walden, Susan E Fahrbach, Hugh M Robertson. Insect Biochem Mol Biol 2005
92
23

Spectral sensitivity in Onychophora (velvet worms) revealed by electroretinograms, phototactic behaviour and opsin gene expression.
Holger Beckmann, Lars Hering, Miriam J Henze, Almut Kelber, Paul A Stevenson, Georg Mayer. J Exp Biol 2015
20
45

The Dynamic Evolutionary History of Pancrustacean Eyes and Opsins.
Miriam J Henze, Todd H Oakley. Integr Comp Biol 2015
52
23

The origins of novel protein interactions during animal opsin evolution.
David C Plachetzki, Bernard M Degnan, Todd H Oakley. PLoS One 2007
75
21

Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein.
Takuma Hashimoto, Daiki D Horikawa, Yuki Saito, Hirokazu Kuwahara, Hiroko Kozuka-Hata, Tadasu Shin-I, Yohei Minakuchi, Kazuko Ohishi, Ayuko Motoyama, Tomoyuki Aizu,[...]. Nat Commun 2016
126
21


Full-length transcriptome assembly from RNA-Seq data without a reference genome.
Manfred G Grabherr, Brian J Haas, Moran Yassour, Joshua Z Levin, Dawn A Thompson, Ido Amit, Xian Adiconis, Lin Fan, Raktima Raychowdhury, Qiandong Zeng,[...]. Nat Biotechnol 2011
18


No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini.
Georgios Koutsovoulos, Sujai Kumar, Dominik R Laetsch, Lewis Stevens, Jennifer Daub, Claire Conlon, Habib Maroon, Fran Thomas, Aziz A Aboobaker, Mark Blaxter. Proc Natl Acad Sci U S A 2016
134
18

Evidence for extensive horizontal gene transfer from the draft genome of a tardigrade.
Thomas C Boothby, Jennifer R Tenlen, Frank W Smith, Jeremy R Wang, Kiera A Patanella, Erin Osborne Nishimura, Sophia C Tintori, Qing Li, Corbin D Jones, Mark Yandell,[...]. Proc Natl Acad Sci U S A 2015
90
18


Identification and characterization of a protostome homologue of peropsin from a jumping spider.
Takashi Nagata, Mitsumasa Koyanagi, Hisao Tsukamoto, Akihisa Terakita. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2010
32
18


Molecular characterization of crustacean visual pigments and the evolution of pancrustacean opsins.
Megan L Porter, Thomas W Cronin, David A McClellan, Keith A Crandall. Mol Biol Evol 2007
54
15

Opsin co-expression in Limulus photoreceptors: differential regulation by light and a circadian clock.
C Katti, K Kempler, M L Porter, A Legg, R Gonzalez, E Garcia-Rivera, D Dugger, B-A Battelle. J Exp Biol 2010
32
18


Evolution of opsins and phototransduction.
Yoshinori Shichida, Take Matsuyama. Philos Trans R Soc Lond B Biol Sci 2009
212
15

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.
Stéphane Guindon, Jean-François Dufayard, Vincent Lefort, Maria Anisimova, Wim Hordijk, Olivier Gascuel. Syst Biol 2010
15

Phylogenomics resolves the timing and pattern of insect evolution.
Bernhard Misof, Shanlin Liu, Karen Meusemann, Ralph S Peters, Alexander Donath, Christoph Mayer, Paul B Frandsen, Jessica Ware, Tomáš Flouri, Rolf G Beutel,[...]. Science 2014
15

Opsins in Limulus eyes: characterization of three visible light-sensitive opsins unique to and co-expressed in median eye photoreceptors and a peropsin/RGR that is expressed in all eyes.
Barbara-Anne Battelle, Karen E Kempler, Spencer R Saraf, Catherine E Marten, Donald R Dugger, Daniel I Speiser, Todd H Oakley. J Exp Biol 2015
11
54

The tardigrade Hypsibius dujardini, a new model for studying the evolution of development.
Willow N Gabriel, Robert McNuff, Sapna K Patel, T Ryan Gregory, William R Jeck, Corbin D Jones, Bob Goldstein. Dev Biol 2007
72
15

BLAST+: architecture and applications.
Christiam Camacho, George Coulouris, Vahram Avagyan, Ning Ma, Jason Papadopoulos, Kevin Bealer, Thomas L Madden. BMC Bioinformatics 2009
15

Evidence for a clade of nematodes, arthropods and other moulting animals.
A M Aguinaldo, J M Turbeville, L S Linford, M C Rivera, J R Garey, R A Raff, J A Lake. Nature 1997
915
15

Opsin evolution and expression in arthropod compound eyes and ocelli: insights from the cricket Gryllus bimaculatus.
Miriam J Henze, Kara Dannenhauer, Martin Kohler, Thomas Labhart, Matthias Gesemann. BMC Evol Biol 2012
42
13

Peropsin, a novel visual pigment-like protein located in the apical microvilli of the retinal pigment epithelium.
H Sun, D J Gilbert, N G Copeland, N A Jenkins, J Nathans. Proc Natl Acad Sci U S A 1997
105
13

Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.
Daniel I Speiser, M Sabrina Pankey, Alexander K Zaharoff, Barbara A Battelle, Heather D Bracken-Grissom, Jesse W Breinholt, Seth M Bybee, Thomas W Cronin, Anders Garm, Annie R Lindgren,[...]. BMC Bioinformatics 2014
42
13

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
S F Altschul, T L Madden, A A Schäffer, J Zhang, Z Zhang, W Miller, D J Lipman. Nucleic Acids Res 1997
13

Reconstructing the eyes of Urbilateria.
D Arendt, J Wittbrodt. Philos Trans R Soc Lond B Biol Sci 2001
107
13

Development of pigment-cup eyes in the polychaete Platynereis dumerilii and evolutionary conservation of larval eyes in Bilateria.
Detlev Arendt, Kristin Tessmar, Maria-Ines Medeiros de Campos-Baptista, Adriaan Dorresteijn, Joachim Wittbrodt. Development 2002
125
13

Extraordinary diversity of visual opsin genes in dragonflies.
Ryo Futahashi, Ryouka Kawahara-Miki, Michiyo Kinoshita, Kazutoshi Yoshitake, Shunsuke Yajima, Kentaro Arikawa, Takema Fukatsu. Proc Natl Acad Sci U S A 2015
87
13

Evolution of eyes and photoreceptor cell types.
Detlev Arendt. Int J Dev Biol 2003
223
13

The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima.
Ariel D Chipman, David E K Ferrier, Carlo Brena, Jiaxin Qu, Daniel S T Hughes, Reinhard Schröder, Montserrat Torres-Oliva, Nadia Znassi, Huaiyang Jiang, Francisca C Almeida,[...]. PLoS Biol 2014
159
13

Whole-Genome Comparative Analysis of Two Carbapenem-Resistant ST-258 Klebsiella pneumoniae Strains Isolated during a North-Eastern Ohio Outbreak: Differences within the High Heterogeneity Zones.
María Soledad Ramirez, Gang Xie, German M Traglia, Shannon L Johnson, Karen W Davenport, David van Duin, Azam Ramazani, Federico Perez, Michael R Jacobs, David J Sherratt,[...]. Genome Biol Evol 2016
20
25


Genome sequencing of a single tardigrade Hypsibius dujardini individual.
Kazuharu Arakawa, Yuki Yoshida, Masaru Tomita. Sci Data 2016
27
18


A photic visual cycle of rhodopsin regeneration is dependent on Rgr.
P Chen, W Hao, L Rife, X P Wang, D Shen, J Chen, T Ogden, G B Van Boemel, L Wu, M Yang,[...]. Nat Genet 2001
138
10

Molecular basis for ultraviolet vision in invertebrates.
Ernesto Salcedo, Lijun Zheng, Meridee Phistry, Eve E Bagg, Steven G Britt. J Neurosci 2003
63
10

Crystal structure of rhodopsin: A G protein-coupled receptor.
K Palczewski, T Kumasaka, T Hori, C A Behnke, H Motoshima, B A Fox, I Le Trong, D C Teller, T Okada, R E Stenkamp,[...]. Science 2000
10



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.