A citation-based method for searching scientific literature

Jacob Tveiten Bjerrum, Mattias Rantalainen, Yulan Wang, Jørgen Olsen, Ole Haagen Nielsen. Metabolomics 2014
Times Cited: 18







List of co-cited articles
110 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Metabonomics in ulcerative colitis: diagnostics, biomarker identification, and insight into the pathophysiology.
Jacob T Bjerrum, Ole H Nielsen, Fuhua Hao, Huiru Tang, Jeremy K Nicholson, Yulan Wang, Jørgen Olsen. J Proteome Res 2010
103
27

Quantitative metabolomic profiling of serum, plasma, and urine by (1)H NMR spectroscopy discriminates between patients with inflammatory bowel disease and healthy individuals.
Rudolf Schicho, Rustem Shaykhutdinov, Jennifer Ngo, Alsu Nazyrova, Christopher Schneider, Remo Panaccione, Gilaad G Kaplan, Hans J Vogel, Martin Storr. J Proteome Res 2012
142
27

Metabonomics of human fecal extracts characterize ulcerative colitis, Crohn's disease and healthy individuals.
Jacob Tveiten Bjerrum, Yulan Wang, Fuhua Hao, Mehmet Coskun, Christian Ludwig, Ulrich Günther, Ole Haagen Nielsen. Metabolomics 2015
113
27

Transcriptional analysis of the intestinal mucosa of patients with ulcerative colitis in remission reveals lasting epithelial cell alterations.
Núria Planell, Juan J Lozano, Rut Mora-Buch, M Carme Masamunt, Mireya Jimeno, Ingrid Ordás, Miriam Esteller, Elena Ricart, Josep M Piqué, Julián Panés,[...]. Gut 2013
130
22

Diagnosis of ulcerative colitis before onset of inflammation by multivariate modeling of genome-wide gene expression data.
Jørgen Olsen, Thomas A Gerds, Jakob B Seidelin, Claudio Csillag, Jacob T Bjerrum, Jesper T Troelsen, Ole Haagen Nielsen. Inflamm Bowel Dis 2009
78
22

Ulcerative colitis.
Ingrid Ordás, Lars Eckmann, Mark Talamini, Daniel C Baumgart, William J Sandborn. Lancet 2012
871
22


KEGG: kyoto encyclopedia of genes and genomes.
M Kanehisa, S Goto. Nucleic Acids Res 2000
22

Technology insight: metabonomics in gastroenterology-basic principles and potential clinical applications.
Jacob T Bjerrum, Ole H Nielsen, Yulan L Wang, Jørgen Olsen. Nat Clin Pract Gastroenterol Hepatol 2008
24
22

Genome-wide gene expression differences in Crohn's disease and ulcerative colitis from endoscopic pinch biopsies: insights into distinctive pathogenesis.
Feng Wu, Themistocles Dassopoulos, Leslie Cope, Anirban Maitra, Steven R Brant, Mary L Harris, Theodore M Bayless, Giovanni Parmigiani, Shukti Chakravarti. Inflamm Bowel Dis 2007
186
16

A simple index of Crohn's-disease activity.
R F Harvey, J M Bradshaw. Lancet 1980
16

Crohn's disease.
Daniel C Baumgart, William J Sandborn. Lancet 2012
16

Multigene analysis can discriminate between ulcerative colitis, Crohn's disease, and irritable bowel syndrome.
Petra von Stein, Robert Lofberg, Nikolai V Kuznetsov, Alexander W Gielen, Jan-Olov Persson, Rolf Sundberg, Karin Hellstrom, Anders Eriksson, Ragnar Befrits, Ake Ost,[...]. Gastroenterology 2008
51
16

Diagnostics of inflammatory bowel disease.
Susanna Nikolaus, Stefan Schreiber. Gastroenterology 2007
248
16

Genome-wide association studies for complex traits: consensus, uncertainty and challenges.
Mark I McCarthy, Gonçalo R Abecasis, Lon R Cardon, David B Goldstein, Julian Little, John P A Ioannidis, Joel N Hirschhorn. Nat Rev Genet 2008
16

Metabolism of the colonic mucosa in patients with inflammatory bowel diseases: an in vitro proton magnetic resonance spectroscopy study.
Krithika Balasubramanian, Sandeep Kumar, Rajeev R Singh, Uma Sharma, Vineet Ahuja, Govind K Makharia, Naranamangalam R Jagannathan. Magn Reson Imaging 2009
62
16

The use of 1H magnetic resonance spectroscopy in inflammatory bowel diseases: distinguishing ulcerative colitis from Crohn's disease.
T Bezabeh, R L Somorjai, I C Smith, A E Nikulin, B Dolenko, C N Bernstein. Am J Gastroenterol 2001
52
16

Urinary NMR metabolomic profiles discriminate inflammatory bowel disease from healthy.
Natasha S Stephens, Jesse Siffledeen, Xiaorong Su, Travis B Murdoch, Richard N Fedorak, Carolyn M Slupsky. J Crohns Colitis 2013
74
16

Metabolomics of fecal extracts detects altered metabolic activity of gut microbiota in ulcerative colitis and irritable bowel syndrome.
Gwénaëlle Le Gall, Samah O Noor, Karyn Ridgway, Louise Scovell, Crawford Jamieson, Ian T Johnson, Ian J Colquhoun, E Kate Kemsley, Arjan Narbad. J Proteome Res 2011
192
16

Characterization of inflammatory bowel disease with urinary metabolic profiling.
Horace R T Williams, I Jane Cox, David G Walker, Bernard V North, Venisha M Patel, Sara E Marshall, Derek P Jewell, Subrata Ghosh, Huw J W Thomas, Julian P Teare,[...]. Am J Gastroenterol 2009
123
16

Metabolomics reveals metabolic biomarkers of Crohn's disease.
Janet Jansson, Ben Willing, Marianna Lucio, Ages Fekete, Johan Dicksved, Jonas Halfvarson, Curt Tysk, Philippe Schmitt-Kopplin. PLoS One 2009
329
16

Merging transcriptomics and metabolomics--advances in breast cancer profiling.
Eldrid Borgan, Beathe Sitter, Ole Christian Lingjærde, Hilde Johnsen, Steinar Lundgren, Tone F Bathen, Therese Sørlie, Anne-Lise Børresen-Dale, Ingrid S Gribbestad. BMC Cancer 2010
78
16

MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data.
Kenneth Haug, Reza M Salek, Pablo Conesa, Janna Hastings, Paula de Matos, Mark Rijnbeek, Tejasvi Mahendraker, Mark Williams, Steffen Neumann, Philippe Rocca-Serra,[...]. Nucleic Acids Res 2013
380
16


Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.
Christian Gieger, Ludwig Geistlinger, Elisabeth Altmaier, Martin Hrabé de Angelis, Florian Kronenberg, Thomas Meitinger, Hans-Werner Mewes, H-Erich Wichmann, Klaus M Weinberger, Jerzy Adamski,[...]. PLoS Genet 2008
425
16

Faecal metabolite profiling identifies medium-chain fatty acids as discriminating compounds in IBD.
Vicky De Preter, Kathleen Machiels, Marie Joossens, Ingrid Arijs, Christophe Matthys, Severine Vermeire, Paul Rutgeerts, Kristin Verbeke. Gut 2015
101
16

pROC: an open-source package for R and S+ to analyze and compare ROC curves.
Xavier Robin, Natacha Turck, Alexandre Hainard, Natalia Tiberti, Frédérique Lisacek, Jean-Charles Sanchez, Markus Müller. BMC Bioinformatics 2011
11


Metabolomics: is it useful for inflammatory bowel diseases?
Martin Storr, Hans J Vogel, Rudolf Schicho. Curr Opin Gastroenterol 2013
37
11

Identification of microRNAs associated with ileal and colonic Crohn's disease.
Feng Wu, Simin Zhang, Themistocles Dassopoulos, Mary L Harris, Theodore M Bayless, Stephen J Meltzer, Steven R Brant, John H Kwon. Inflamm Bowel Dis 2010
203
11

Whole genome gene expression meta-analysis of inflammatory bowel disease colon mucosa demonstrates lack of major differences between Crohn's disease and ulcerative colitis.
Atle van Beelen Granlund, Arnar Flatberg, Ann E Østvik, Ignat Drozdov, Bjørn I Gustafsson, Mark Kidd, Vidar Beisvag, Sverre H Torp, Helge L Waldum, Tom Christian Martinsen,[...]. PLoS One 2013
83
11


Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Luke Jostins, Stephan Ripke, Rinse K Weersma, Richard H Duerr, Dermot P McGovern, Ken Y Hui, James C Lee, L Philip Schumm, Yashoda Sharma, Carl A Anderson,[...]. Nature 2012
11

Increasing incidence and prevalence of the inflammatory bowel diseases with time, based on systematic review.
Natalie A Molodecky, Ing Shian Soon, Doreen M Rabi, William A Ghali, Mollie Ferris, Greg Chernoff, Eric I Benchimol, Remo Panaccione, Subrata Ghosh, Herman W Barkema,[...]. Gastroenterology 2012
11

Pathways to the analysis of microarray data.
R Keira Curtis, Matej Oresic, Antonio Vidal-Puig. Trends Biotechnol 2005
189
11

Pathway analysis of genomic data: concepts, methods, and prospects for future development.
Vijay K Ramanan, Li Shen, Jason H Moore, Andrew J Saykin. Trends Genet 2012
174
11

Deep resequencing of GWAS loci identifies rare variants in CARD9, IL23R and RNF186 that are associated with ulcerative colitis.
Mélissa Beaudoin, Philippe Goyette, Gabrielle Boucher, Ken Sin Lo, Manuel A Rivas, Christine Stevens, Azadeh Alikashani, Martin Ladouceur, David Ellinghaus, Leif Törkvist,[...]. PLoS Genet 2013
132
11

Serum metabolic profiling in inflammatory bowel disease.
Horace R T Williams, James D Willsmore, I Jane Cox, David G Walker, Jeremy F L Cobbold, Simon D Taylor-Robinson, Timothy R Orchard. Dig Dis Sci 2012
60
11

Connecting dysbiosis, bile-acid dysmetabolism and gut inflammation in inflammatory bowel diseases.
Henri Duboc, Sylvie Rajca, Dominique Rainteau, David Benarous, Marie-Anne Maubert, Elodie Quervain, Ginette Thomas, Véronique Barbu, Lydie Humbert, Guillaume Despras,[...]. Gut 2013
356
11

1H NMR-based spectroscopy detects metabolic alterations in serum of patients with early-stage ulcerative colitis.
Ying Zhang, Lianjie Lin, Yanbin Xu, Yan Lin, Yu Jin, Changqing Zheng. Biochem Biophys Res Commun 2013
28
11


Serum and urine metabolomic fingerprinting in diagnostics of inflammatory bowel diseases.
Tomasz Dawiskiba, Stanisław Deja, Agata Mulak, Adam Ząbek, Ewa Jawień, Dorota Pawełka, Mirosław Banasik, Agnieszka Mastalerz-Migas, Waldemar Balcerzak, Krzysztof Kaliszewski,[...]. World J Gastroenterol 2014
99
11

Rapid and noninvasive metabonomic characterization of inflammatory bowel disease.
Julian R Marchesi, Elaine Holmes, Fatima Khan, Sunil Kochhar, Pauline Scanlan, Fergus Shanahan, Ian D Wilson, Yulan Wang. J Proteome Res 2007
366
11

Quantitative metabolomic profiling of serum and urine in DSS-induced ulcerative colitis of mice by (1)H NMR spectroscopy.
Rudolf Schicho, Alsu Nazyrova, Rustem Shaykhutdinov, Gavin Duggan, Hans J Vogel, Martin Storr. J Proteome Res 2010
67
11

Peripheral blood based discrimination of ulcerative colitis and Crohn's disease from non-IBD colitis by genome-wide gene expression profiling.
Ferenc Sipos, Orsolya Galamb, Barnabás Wichmann, Tibor Krenács, Kinga Tóth, Katalin Leiszter, Györgyi Muzes, Tamás Zágoni, Zsolt Tulassay, Béla Molnár. Dis Markers 2011
17
11

Current practice of liquid chromatography-mass spectrometry in metabolomics and metabonomics.
Helen G Gika, Georgios A Theodoridis, Robert S Plumb, Ian D Wilson. J Pharm Biomed Anal 2014
196
11

HMDB 3.0--The Human Metabolome Database in 2013.
David S Wishart, Timothy Jewison, An Chi Guo, Michael Wilson, Craig Knox, Yifeng Liu, Yannick Djoumbou, Rupasri Mandal, Farid Aziat, Edison Dong,[...]. Nucleic Acids Res 2013
11

Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA.
Atanas Kamburov, Rachel Cavill, Timothy M D Ebbels, Ralf Herwig, Hector C Keun. Bioinformatics 2011
198
11

A genome-wide metabolic QTL analysis in Europeans implicates two loci shaped by recent positive selection.
George Nicholson, Mattias Rantalainen, Jia V Li, Anthony D Maher, Daniel Malmodin, Kourosh R Ahmadi, Johan H Faber, Amy Barrett, Josine L Min, N William Rayner,[...]. PLoS Genet 2011
91
11

A genome-wide perspective of genetic variation in human metabolism.
Thomas Illig, Christian Gieger, Guangju Zhai, Werner Römisch-Margl, Rui Wang-Sattler, Cornelia Prehn, Elisabeth Altmaier, Gabi Kastenmüller, Bernet S Kato, Hans-Werner Mewes,[...]. Nat Genet 2010
427
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.