A citation-based method for searching scientific literature

Petar Glažar, Panagiotis Papavasileiou, Nikolaus Rajewsky. RNA 2014
Times Cited: 997







List of co-cited articles
698 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Circular RNAs are a large class of animal RNAs with regulatory potency.
Sebastian Memczak, Marvin Jens, Antigoni Elefsinioti, Francesca Torti, Janna Krueger, Agnieszka Rybak, Luisa Maier, Sebastian D Mackowiak, Lea H Gregersen, Mathias Munschauer,[...]. Nature 2013
53

Natural RNA circles function as efficient microRNA sponges.
Thomas B Hansen, Trine I Jensen, Bettina H Clausen, Jesper B Bramsen, Bente Finsen, Christian K Damgaard, Jørgen Kjems. Nature 2013
35

Circular RNAs are abundant, conserved, and associated with ALU repeats.
William R Jeck, Jessica A Sorrentino, Kai Wang, Michael K Slevin, Christin E Burd, Jinze Liu, William F Marzluff, Norman E Sharpless. RNA 2013
32

CircInteractome: A web tool for exploring circular RNAs and their interacting proteins and microRNAs.
Dawood B Dudekula, Amaresh C Panda, Ioannis Grammatikakis, Supriyo De, Kotb Abdelmohsen, Myriam Gorospe. RNA Biol 2016
654
29

Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types.
Julia Salzman, Charles Gawad, Peter Lincoln Wang, Norman Lacayo, Patrick O Brown. PLoS One 2012
23

The biogenesis, biology and characterization of circular RNAs.
Lasse S Kristensen, Maria S Andersen, Lotte V W Stagsted, Karoline K Ebbesen, Thomas B Hansen, Jørgen Kjems. Nat Rev Genet 2019
23

The Landscape of Circular RNA in Cancer.
Josh N Vo, Marcin Cieslik, Yajia Zhang, Sudhanshu Shukla, Lanbo Xiao, Yuping Zhang, Yi-Mi Wu, Saravana M Dhanasekaran, Carl G Engelke, Xuhong Cao,[...]. Cell 2019
764
23

Exon-intron circular RNAs regulate transcription in the nucleus.
Zhaoyong Li, Chuan Huang, Chun Bao, Liang Chen, Mei Lin, Xiaolin Wang, Guolin Zhong, Bin Yu, Wanchen Hu, Limin Dai,[...]. Nat Struct Mol Biol 2015
22

Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures.
H L Sanger, G Klotz, D Riesner, H J Gross, A K Kleinschmidt. Proc Natl Acad Sci U S A 1976
20

The RNA binding protein quaking regulates formation of circRNAs.
Simon J Conn, Katherine A Pillman, John Toubia, Vanessa M Conn, Marika Salmanidis, Caroline A Phillips, Suraya Roslan, Andreas W Schreiber, Philip A Gregory, Gregory J Goodall. Cell 2015
20

Complementary sequence-mediated exon circularization.
Xiao-Ou Zhang, Hai-Bin Wang, Yang Zhang, Xuhua Lu, Ling-Ling Chen, Li Yang. Cell 2014
20

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data.
Jun-Hao Li, Shun Liu, Hui Zhou, Liang-Hu Qu, Jian-Hua Yang. Nucleic Acids Res 2014
19

circRNA biogenesis competes with pre-mRNA splicing.
Reut Ashwal-Fluss, Markus Meyer, Nagarjuna Reddy Pamudurti, Andranik Ivanov, Osnat Bartok, Mor Hanan, Naveh Evantal, Sebastian Memczak, Nikolaus Rajewsky, Sebastian Kadener. Mol Cell 2014
19

Circular intronic long noncoding RNAs.
Yang Zhang, Xiao-Ou Zhang, Tian Chen, Jian-Feng Xiang, Qing-Fei Yin, Yu-Hang Xing, Shanshan Zhu, Li Yang, Ling-Ling Chen. Mol Cell 2013
19

Circbank: a comprehensive database for circRNA with standard nomenclature.
Ming Liu, Qian Wang, Jian Shen, Burton B Yang, Xiangming Ding. RNA Biol 2019
162
17

Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed.
Agnieszka Rybak-Wolf, Christin Stottmeister, Petar Glažar, Marvin Jens, Natalia Pino, Sebastian Giusti, Mor Hanan, Mikaela Behm, Osnat Bartok, Reut Ashwal-Fluss,[...]. Mol Cell 2015
17

Diverse alternative back-splicing and alternative splicing landscape of circular RNAs.
Xiao-Ou Zhang, Rui Dong, Yang Zhang, Jia-Lin Zhang, Zheng Luo, Jun Zhang, Ling-Ling Chen, Li Yang. Genome Res 2016
508
17

Circular RNA is enriched and stable in exosomes: a promising biomarker for cancer diagnosis.
Yan Li, Qiupeng Zheng, Chunyang Bao, Shuyi Li, Weijie Guo, Jiang Zhao, Di Chen, Jianren Gu, Xianghuo He, Shenglin Huang. Cell Res 2015
17

circRNADb: A comprehensive database for human circular RNAs with protein-coding annotations.
Xiaoping Chen, Ping Han, Tao Zhou, Xuejiang Guo, Xiaofeng Song, Yan Li. Sci Rep 2016
267
16


Circ-ZNF609 Is a Circular RNA that Can Be Translated and Functions in Myogenesis.
Ivano Legnini, Gaia Di Timoteo, Francesca Rossi, Mariangela Morlando, Francesca Briganti, Olga Sthandier, Alessandro Fatica, Tiziana Santini, Adrian Andronache, Mark Wade,[...]. Mol Cell 2017
16


Detecting and characterizing circular RNAs.
William R Jeck, Norman E Sharpless. Nat Biotechnol 2014
15

Circular RNA profiling reveals an abundant circHIPK3 that regulates cell growth by sponging multiple miRNAs.
Qiupeng Zheng, Chunyang Bao, Weijie Guo, Shuyi Li, Jie Chen, Bing Chen, Yanting Luo, Dongbin Lyu, Yan Li, Guohai Shi,[...]. Nat Commun 2016
15

Circular RNA identification based on multiple seed matching.
Yuan Gao, Jinyang Zhang, Fangqing Zhao. Brief Bioinform 2018
286
14

Loss of a mammalian circular RNA locus causes miRNA deregulation and affects brain function.
Monika Piwecka, Petar Glažar, Luis R Hernandez-Miranda, Sebastian Memczak, Susanne A Wolf, Agnieszka Rybak-Wolf, Andrei Filipchyk, Filippos Klironomos, Cledi Alicia Cerda Jara, Pascal Fenske,[...]. Science 2017
684
14

CIRCpedia v2: An Updated Database for Comprehensive Circular RNA Annotation and Expression Comparison.
Rui Dong, Xu-Kai Ma, Guo-Wei Li, Li Yang. Genomics Proteomics Bioinformatics 2018
125
13

Extensive translation of circular RNAs driven by N6-methyladenosine.
Yun Yang, Xiaojuan Fan, Miaowei Mao, Xiaowei Song, Ping Wu, Yang Zhang, Yongfeng Jin, Yi Yang, Ling-Ling Chen, Yang Wang,[...]. Cell Res 2017
969
13

Expanded identification and characterization of mammalian circular RNAs.
Junjie U Guo, Vikram Agarwal, Huili Guo, David P Bartel. Genome Biol 2014
13

Translation of CircRNAs.
Nagarjuna Reddy Pamudurti, Osnat Bartok, Marvin Jens, Reut Ashwal-Fluss, Christin Stottmeister, Larissa Ruhe, Mor Hanan, Emanuel Wyler, Daniel Perez-Hernandez, Evelyn Ramberger,[...]. Mol Cell 2017
998
12

circRNA disease: a manually curated database of experimentally supported circRNA-disease associations.
Zheng Zhao, Kuanyu Wang, Fan Wu, Wen Wang, Kenan Zhang, Huimin Hu, Yanwei Liu, Tao Jiang. Cell Death Dis 2018
113
12

Circ2Traits: a comprehensive database for circular RNA potentially associated with disease and traits.
Suman Ghosal, Shaoli Das, Rituparno Sen, Piyali Basak, Jayprokas Chakrabarti. Front Genet 2013
332
12

Foxo3 circular RNA retards cell cycle progression via forming ternary complexes with p21 and CDK2.
William W Du, Weining Yang, Elizabeth Liu, Zhenguo Yang, Preet Dhaliwal, Burton B Yang. Nucleic Acids Res 2016
12


CSCD: a database for cancer-specific circular RNAs.
Siyu Xia, Jing Feng, Ke Chen, Yanbing Ma, Jing Gong, Fangfang Cai, Yuxuan Jin, Yang Gao, Linjian Xia, Hong Chang,[...]. Nucleic Acids Res 2018
227
12

The Biogenesis, Functions, and Challenges of Circular RNAs.
Xiang Li, Li Yang, Ling-Ling Chen. Mol Cell 2018
12

The biogenesis and emerging roles of circular RNAs.
Ling-Ling Chen. Nat Rev Mol Cell Biol 2016
12

Comprehensive characterization of tissue-specific circular RNAs in the human and mouse genomes.
Siyu Xia, Jing Feng, Lijun Lei, Jun Hu, Linjian Xia, Jun Wang, Yu Xiang, Lingjun Liu, Shan Zhong, Leng Han,[...]. Brief Bioinform 2017
210
11

Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation.
Jakub O Westholm, Pedro Miura, Sara Olson, Sol Shenker, Brian Joseph, Piero Sanfilippo, Susan E Celniker, Brenton R Graveley, Eric C Lai. Cell Rep 2014
604
11

Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S Baliga, Jonathan T Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker. Genome Res 2003
11

CircR2Disease: a manually curated database for experimentally supported circular RNAs associated with various diseases.
Chunyan Fan, Xiujuan Lei, Zengqiang Fang, Qinghua Jiang, Fang-Xiang Wu. Database (Oxford) 2018
119
11

Cell-type specific features of circular RNA expression.
Julia Salzman, Raymond E Chen, Mari N Olsen, Peter L Wang, Patrick O Brown. PLoS Genet 2013
11


Predicting effective microRNA target sites in mammalian mRNAs.
Vikram Agarwal, George W Bell, Jin-Wu Nam, David P Bartel. Elife 2015
11

Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals.
Andranik Ivanov, Sebastian Memczak, Emanuel Wyler, Francesca Torti, Hagit T Porath, Marta R Orejuela, Michael Piechotta, Erez Y Levanon, Markus Landthaler, Christoph Dieterich,[...]. Cell Rep 2015
652
11

Circular RNAs: diversity of form and function.
Erika Lasda, Roy Parker. RNA 2014
764
11

CircNet: a database of circular RNAs derived from transcriptome sequencing data.
Yu-Chen Liu, Jian-Rong Li, Chuan-Hu Sun, Erik Andrews, Rou-Fang Chao, Feng-Mao Lin, Shun-Long Weng, Sheng-Da Hsu, Chieh-Chen Huang, Chao Cheng,[...]. Nucleic Acids Res 2016
247
10

Scrambled exons.
J M Nigro, K R Cho, E R Fearon, S E Kern, J M Ruppert, J D Oliner, K W Kinzler, B Vogelstein. Cell 1991
690
10

CircRNA: functions and properties of a novel potential biomarker for cancer.
Shujuan Meng, Hecheng Zhou, Ziyang Feng, Zihao Xu, Ying Tang, Peiyao Li, Minghua Wu. Mol Cancer 2017
913
10

Comprehensive profiling of circular RNAs with nanopore sequencing and CIRI-long.
Jinyang Zhang, Lingling Hou, Zhenqiang Zuo, Peifeng Ji, Xiaorong Zhang, Yuanchao Xue, Fangqing Zhao. Nat Biotechnol 2021
55
18


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.