A citation-based method for searching scientific literature

Young Seok Ju, Ludmil B Alexandrov, Moritz Gerstung, Inigo Martincorena, Serena Nik-Zainal, Manasa Ramakrishna, Helen R Davies, Elli Papaemmanuil, Gunes Gundem, Adam Shlien, Niccolo Bolli, Sam Behjati, Patrick S Tarpey, Jyoti Nangalia, Charles E Massie, Adam P Butler, Jon W Teague, George S Vassiliou, Anthony R Green, Ming-Qing Du, Ashwin Unnikrishnan, John E Pimanda, Bin Tean Teh, Nikhil Munshi, Mel Greaves, Paresh Vyas, Adel K El-Naggar, Tom Santarius, V Peter Collins, Richard Grundy, Jack A Taylor, D Neil Hayes, David Malkin, Christopher S Foster, Anne Y Warren, Hayley C Whitaker, Daniel Brewer, Rosalind Eeles, Colin Cooper, David Neal, Tapio Visakorpi, William B Isaacs, G Steven Bova, Adrienne M Flanagan, P Andrew Futreal, Andy G Lynch, Patrick F Chinnery, Ultan McDermott, Michael R Stratton, Peter J Campbell. Elife 2014
Times Cited: 224







List of co-cited articles
1215 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Simultaneous DNA and RNA Mapping of Somatic Mitochondrial Mutations across Diverse Human Cancers.
James B Stewart, Babak Alaei-Mahabadi, Radhakrishnan Sabarinathan, Tore Samuelsson, Jan Gorodkin, Claes M Gustafsson, Erik Larsson. PLoS Genet 2015
72
40

Comprehensive molecular characterization of mitochondrial genomes in human cancers.
Yuan Yuan, Young Seok Ju, Youngwook Kim, Jun Li, Yumeng Wang, Christopher J Yoon, Yang Yang, Inigo Martincorena, Chad J Creighton, John N Weinstein,[...]. Nat Genet 2020
91
28

Mitochondrial DNA copy number variation across human cancers.
Ed Reznik, Martin L Miller, Yasin Şenbabaoğlu, Nadeem Riaz, Judy Sarungbam, Satish K Tickoo, Hikmat A Al-Ahmadie, William Lee, Venkatraman E Seshan, A Ari Hakimi,[...]. Elife 2016
240
21

Heteroplasmic mitochondrial DNA mutations in normal and tumour cells.
Yiping He, Jian Wu, Devin C Dressman, Christine Iacobuzio-Donahue, Sanford D Markowitz, Victor E Velculescu, Luis A Diaz, Kenneth W Kinzler, Bert Vogelstein, Nickolas Papadopoulos. Nature 2010
374
20

ROS-generating mitochondrial DNA mutations can regulate tumor cell metastasis.
Kaori Ishikawa, Keizo Takenaga, Miho Akimoto, Nobuko Koshikawa, Aya Yamaguchi, Hirotake Imanishi, Kazuto Nakada, Yoshio Honma, Jun-Ichi Hayashi. Science 2008
922
18



Mitochondria and cancer.
Douglas C Wallace. Nat Rev Cancer 2012
16

Heteroplasmic shifts in tumor mitochondrial genomes reveal tissue-specific signals of relaxed and positive selection.
Sneha Grandhi, Colleen Bosworth, Wesley Maddox, Cole Sensiba, Sara Akhavanfard, Ying Ni, Thomas LaFramboise. Hum Mol Genet 2017
28
53

Sequence and organization of the human mitochondrial genome.
S Anderson, A T Bankier, B G Barrell, M H de Bruijn, A R Coulson, J Drouin, I C Eperon, D P Nierlich, B A Roe, F Sanger,[...]. Nature 1981
14

Hallmarks of cancer: the next generation.
Douglas Hanahan, Robert A Weinberg. Cell 2011
13

mtDNA mutations increase tumorigenicity in prostate cancer.
John A Petros, Amanda K Baumann, Eduardo Ruiz-Pesini, Mahul B Amin, Carrie Qi Sun, John Hall, SoDug Lim, Muta M Issa, W Dana Flanders, Seyed H Hosseini,[...]. Proc Natl Acad Sci U S A 2005
608
13

Mitochondrial genome acquisition restores respiratory function and tumorigenic potential of cancer cells without mitochondrial DNA.
An S Tan, James W Baty, Lan-Feng Dong, Ayenachew Bezawork-Geleta, Berwini Endaya, Jacob Goodwin, Martina Bajzikova, Jaromira Kovarova, Martin Peterka, Bing Yan,[...]. Cell Metab 2015
408
13

Spectrum of somatic mitochondrial mutations in five cancers.
Tatianna C Larman, Steven R DePalma, Angela G Hadjipanayis, Alexei Protopopov, Jianhua Zhang, Stacey B Gabriel, Lynda Chin, Christine E Seidman, Raju Kucherlapati, J G Seidman. Proc Natl Acad Sci U S A 2012
149
12

The Genomic Landscape of Renal Oncocytoma Identifies a Metabolic Barrier to Tumorigenesis.
Shilpy Joshi, Denis Tolkunov, Hana Aviv, Abraham A Hakimi, Ming Yao, James J Hsieh, Shridar Ganesan, Chang S Chan, Eileen White. Cell Rep 2015
90
13

Germline selection shapes human mitochondrial DNA diversity.
Wei Wei, Salih Tuna, Michael J Keogh, Katherine R Smith, Timothy J Aitman, Phil L Beales, David L Bennett, Daniel P Gale, Maria A K Bitner-Glindzicz, Graeme C Black,[...]. Science 2019
87
13

Extensive tissue-related and allele-related mtDNA heteroplasmy suggests positive selection for somatic mutations.
Mingkun Li, Roland Schröder, Shengyu Ni, Burkhard Madea, Mark Stoneking. Proc Natl Acad Sci U S A 2015
113
11

mtDNA Variation and Analysis Using Mitomap and Mitomaster.
Marie T Lott, Jeremy N Leipzig, Olga Derbeneva, H Michael Xie, Dimitra Chalkia, Mahdi Sarmady, Vincent Procaccio, Douglas C Wallace. Curr Protoc Bioinformatics 2013
256
11

The Landscape of mtDNA Modifications in Cancer: A Tale of Two Cities.
Kate L Hertweck, Santanu Dasgupta. Front Oncol 2017
34
32

Origins of human mitochondrial point mutations as DNA polymerase gamma-mediated errors.
Weiming Zheng, Konstantin Khrapko, Hilary A Coller, William G Thilly, William C Copeland. Mutat Res 2006
86
12

Mitochondrial mutations drive prostate cancer aggression.
Julia F Hopkins, Veronica Y Sabelnykova, Joachim Weischenfeldt, Ronald Simon, Jennifer A Aguiar, Rached Alkallas, Lawrence E Heisler, Junyan Zhang, John D Watson, Melvin L K Chua,[...]. Nat Commun 2017
57
19

Mitochondrial metabolism and ROS generation are essential for Kras-mediated tumorigenicity.
Frank Weinberg, Robert Hamanaka, William W Wheaton, Samuel Weinberg, Joy Joseph, Marcos Lopez, Balaraman Kalyanaraman, Gökhan M Mutlu, G R Scott Budinger, Navdeep S Chandel. Proc Natl Acad Sci U S A 2010
10

Progressive increase in mtDNA 3243A>G heteroplasmy causes abrupt transcriptional reprogramming.
Martin Picard, Jiangwen Zhang, Saege Hancock, Olga Derbeneva, Ryan Golhar, Pawel Golik, Sean O'Hearn, Shawn Levy, Prasanth Potluri, Maria Lvova,[...]. Proc Natl Acad Sci U S A 2014
167
10

Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA.
R M Andrews, I Kubacka, P F Chinnery, R N Lightowlers, D M Turnbull, N Howell. Nat Genet 1999
10

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
10

Premature ageing in mice expressing defective mitochondrial DNA polymerase.
Aleksandra Trifunovic, Anna Wredenberg, Maria Falkenberg, Johannes N Spelbrink, Anja T Rovio, Carl E Bruder, Mohammad Bohlooly-Y, Sebastian Gidlöf, Anders Oldfors, Rolf Wibom,[...]. Nature 2004
10

Early loss of mitochondrial complex I and rewiring of glutathione metabolism in renal oncocytoma.
Raj K Gopal, Sarah E Calvo, Angela R Shih, Frances L Chaves, Declan McGuone, Eran Mick, Kerry A Pierce, Yang Li, Andrea Garofalo, Eliezer M Van Allen,[...]. Proc Natl Acad Sci U S A 2018
42
23

Metabolic Heterogeneity in Human Lung Tumors.
Christopher T Hensley, Brandon Faubert, Qing Yuan, Naama Lev-Cohain, Eunsook Jin, Jiyeon Kim, Lei Jiang, Bookyung Ko, Rachael Skelton, Laurin Loudat,[...]. Cell 2016
555
10

Mitochondrial DNA: the overlooked oncogenome?
Payam A Gammage, Christian Frezza. BMC Biol 2019
54
18

Understanding the Warburg effect: the metabolic requirements of cell proliferation.
Matthew G Vander Heiden, Lewis C Cantley, Craig B Thompson. Science 2009
9


Mitochondria and Cancer.
Wei-Xing Zong, Joshua D Rabinowitz, Eileen White. Mol Cell 2016
451
9

A heteroplasmic, not homoplasmic, mitochondrial DNA mutation promotes tumorigenesis via alteration in reactive oxygen species generation and apoptosis.
Jeong Soon Park, Lokendra Kumar Sharma, Hongzhi Li, Ruihua Xiang, Deborah Holstein, Jun Wu, James Lechleiter, Susan L Naylor, Janice J Deng, Jianxin Lu,[...]. Hum Mol Genet 2009
174
9

Mitochondrial metabolism and cancer.
Paolo Ettore Porporato, Nicoletta Filigheddu, José Manuel Bravo-San Pedro, Guido Kroemer, Lorenzo Galluzzi. Cell Res 2018
409
9

An inhibitor of oxidative phosphorylation exploits cancer vulnerability.
Jennifer R Molina, Yuting Sun, Marina Protopopova, Sonal Gera, Madhavi Bandi, Christopher Bristow, Timothy McAfoos, Pietro Morlacchi, Jeffrey Ackroyd, Ahmed-Noor A Agip,[...]. Nat Med 2018
321
9

On the origin of cancer cells.
O WARBURG. Science 1956
9

An Essential Role of the Mitochondrial Electron Transport Chain in Cell Proliferation Is to Enable Aspartate Synthesis.
Kıvanç Birsoy, Tim Wang, Walter W Chen, Elizaveta Freinkman, Monther Abu-Remaileh, David M Sabatini. Cell 2015
625
8

Mitochondrial DNA genetics and the heteroplasmy conundrum in evolution and disease.
Douglas C Wallace, Dimitra Chalkia. Cold Spring Harb Perspect Biol 2013
351
8

Mitochondrial mutations in cancer.
M Brandon, P Baldi, D C Wallace. Oncogene 2006
563
8

Mitochondrial DNA mutations in human disease.
Robert W Taylor, Doug M Turnbull. Nat Rev Genet 2005
8

Signatures of mutational processes in human cancer.
Ludmil B Alexandrov, Serena Nik-Zainal, David C Wedge, Samuel A J R Aparicio, Sam Behjati, Andrew V Biankin, Graham R Bignell, Niccolò Bolli, Ake Borg, Anne-Lise Børresen-Dale,[...]. Nature 2013
8

Human mitochondrial DNA: roles of inherited and somatic mutations.
Eric A Schon, Salvatore DiMauro, Michio Hirano. Nat Rev Genet 2012
437
8

Mitochondrial DNA mutations in human cancer.
A Chatterjee, E Mambo, D Sidransky. Oncogene 2006
414
8

THE METABOLISM OF TUMORS IN THE BODY.
O Warburg, F Wind, E Negelein. J Gen Physiol 1927
8

Universal heteroplasmy of human mitochondrial DNA.
Brendan A I Payne, Ian J Wilson, Patrick Yu-Wai-Man, Jonathan Coxhead, David Deehan, Rita Horvath, Robert W Taylor, David C Samuels, Mauro Santibanez-Koref, Patrick F Chinnery. Hum Mol Genet 2013
240
8

High levels of mitochondrial DNA deletions in substantia nigra neurons in aging and Parkinson disease.
Andreas Bender, Kim J Krishnan, Christopher M Morris, Geoffrey A Taylor, Amy K Reeve, Robert H Perry, Evelyn Jaros, Joshua S Hersheson, Joanne Betts, Thomas Klopstock,[...]. Nat Genet 2006
8

Metabolism of [U-13 C]glucose in human brain tumors in vivo.
Elizabeth A Maher, Isaac Marin-Valencia, Robert M Bachoo, Tomoyuki Mashimo, Jack Raisanen, Kimmo J Hatanpaa, Ashish Jindal, F Mark Jeffrey, Changho Choi, Christopher Madden,[...]. NMR Biomed 2012
223
8

Oncogene ablation-resistant pancreatic cancer cells depend on mitochondrial function.
Andrea Viale, Piergiorgio Pettazzoni, Costas A Lyssiotis, Haoqiang Ying, Nora Sánchez, Matteo Marchesini, Alessandro Carugo, Tessa Green, Sahil Seth, Virginia Giuliani,[...]. Nature 2014
706
8

The maintenance of mitochondrial DNA integrity--critical analysis and update.
Mikhail Alexeyev, Inna Shokolenko, Glenn Wilson, Susan LeDoux. Cold Spring Harb Perspect Biol 2013
249
8

Base-excision repair deficiency alone or combined with increased oxidative stress does not increase mtDNA point mutations in mice.
Johanna H K Kauppila, Nina A Bonekamp, Arnaud Mourier, Marita A Isokallio, Alexandra Just, Timo E S Kauppila, James B Stewart, Nils-Göran Larsson. Nucleic Acids Res 2018
35
22


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.