A citation-based method for searching scientific literature

Andrea Candelli, Jan Thomas Holthausen, Martin Depken, Ineke Brouwer, Mariëlla A M Franker, Margherita Marchetti, Iddo Heller, Stéphanie Bernard, Edwige B Garcin, Mauro Modesti, Claire Wyman, Gijs J L Wuite, Erwin J G Peterman. Proc Natl Acad Sci U S A 2014
Times Cited: 47







List of co-cited articles
470 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Direct imaging of human Rad51 nucleoprotein dynamics on individual DNA molecules.
Jovencio Hilario, Ichiro Amitani, Ronald J Baskin, Stephen C Kowalczykowski. Proc Natl Acad Sci U S A 2009
101
29

Purified human BRCA2 stimulates RAD51-mediated recombination.
Ryan B Jensen, Aura Carreira, Stephen C Kowalczykowski. Nature 2010
424
27

Real-time assembly and disassembly of human RAD51 filaments on individual DNA molecules.
Thijn van der Heijden, Ralf Seidel, Mauro Modesti, Roland Kanaar, Claire Wyman, Cees Dekker. Nucleic Acids Res 2007
84
27

Counting RAD51 proteins disassembling from nucleoprotein filaments under tension.
Joost van Mameren, Mauro Modesti, Roland Kanaar, Claire Wyman, Erwin J G Peterman, Gijs J L Wuite. Nature 2009
126
25

Ca2+ activates human homologous recombination protein Rad51 by modulating its ATPase activity.
Dmitry V Bugreev, Alexander V Mazin. Proc Natl Acad Sci U S A 2004
182
23

Human Rad51 filaments on double- and single-stranded DNA: correlating regular and irregular forms with recombination function.
Dejan Ristic, Mauro Modesti, Thijn van der Heijden, John van Noort, Cees Dekker, Roland Kanaar, Claire Wyman. Nucleic Acids Res 2005
94
21

Insights into DNA recombination from the structure of a RAD51-BRCA2 complex.
Luca Pellegrini, David S Yu, Thomas Lo, Shubha Anand, MiYoung Lee, Tom L Blundell, Ashok R Venkitaraman. Nature 2002
488
21

Tyrosine phosphorylation stimulates activity of human RAD51 recombinase through altered nucleoprotein filament dynamics.
Shyamal Subramanyam, Mohammed Ismail, Ipshita Bhattacharya, Maria Spies. Proc Natl Acad Sci U S A 2016
30
33

High-resolution structure of the presynaptic RAD51 filament on single-stranded DNA by electron cryo-microscopy.
Judith M Short, Yang Liu, Shaoxia Chen, Neelesh Soni, Mallur S Madhusudhan, Mahmud K K Shivji, Ashok R Venkitaraman. Nucleic Acids Res 2016
52
21


Domain structure and dynamics in the helical filaments formed by RecA and Rad51 on DNA.
X Yu, S A Jacobs, S C West, T Ogawa, E H Egelman. Proc Natl Acad Sci U S A 2001
190
19

DNA sequence alignment by microhomology sampling during homologous recombination.
Zhi Qi, Sy Redding, Ja Yil Lee, Bryan Gibb, YoungHo Kwon, Hengyao Niu, William A Gaines, Patrick Sung, Eric C Greene. Cell 2015
123
19

Real-time measurements of the nucleation, growth and dissociation of single Rad51-DNA nucleoprotein filaments.
Judith Miné, Ludovic Disseau, Masayuki Takahashi, Giovanni Cappello, Marie Dutreix, Jean-Louis Viovy. Nucleic Acids Res 2007
50
17

Direct observation of individual RecA filaments assembling on single DNA molecules.
Roberto Galletto, Ichiro Amitani, Ronald J Baskin, Stephen C Kowalczykowski. Nature 2006
175
17

Human BRCA2 protein promotes RAD51 filament formation on RPA-covered single-stranded DNA.
Jie Liu, Tammy Doty, Bryan Gibson, Wolf-Dietrich Heyer. Nat Struct Mol Biol 2010
258
17

Cryo-EM structures of human RAD51 recombinase filaments during catalysis of DNA-strand exchange.
Jingfei Xu, Lingyun Zhao, Yuanyuan Xu, Weixing Zhao, Patrick Sung, Hong-Wei Wang. Nat Struct Mol Biol 2017
57
17

Two distinct conformational states define the interaction of human RAD51-ATP with single-stranded DNA.
Ineke Brouwer, Tommaso Moschetti, Andrea Candelli, Edwige B Garcin, Mauro Modesti, Luca Pellegrini, Gijs Jl Wuite, Erwin Jg Peterman. EMBO J 2018
32
25

Fluorescent human RAD51 reveals multiple nucleation sites and filament segments tightly associated along a single DNA molecule.
Mauro Modesti, Dejan Ristic, Thijn van der Heijden, Cees Dekker, Joost van Mameren, Erwin J G Peterman, Gijs J L Wuite, Roland Kanaar, Claire Wyman. Structure 2007
59
14

Real-time observation of RecA filament dynamics with single monomer resolution.
Chirlmin Joo, Sean A McKinney, Muneaki Nakamura, Ivan Rasnik, Sua Myong, Taekjip Ha. Cell 2006
212
14

Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures.
Zhucheng Chen, Haijuan Yang, Nikola P Pavletich. Nature 2008
457
14

Roles of ATP binding and ATP hydrolysis in human Rad51 recombinase function.
Peter Chi, Stephen Van Komen, Michael G Sehorn, Stefan Sigurdsson, Patrick Sung. DNA Repair (Amst) 2006
131
14

Structure and mechanism of action of the BRCA2 breast cancer tumor suppressor.
Taha Shahid, Joanna Soroka, Eric Kong, Laurent Malivert, Michael J McIlwraith, Tillman Pape, Stephen C West, Xiaodong Zhang. Nat Struct Mol Biol 2014
64
14

The breast cancer tumor suppressor BRCA2 promotes the specific targeting of RAD51 to single-stranded DNA.
Tina Thorslund, Michael J McIlwraith, Sarah A Compton, Sergey Lekomtsev, Mark Petronczki, Jack D Griffith, Stephen C West. Nat Struct Mol Biol 2010
172
14

DNA RECOMBINATION. Base triplet stepping by the Rad51/RecA family of recombinases.
Ja Yil Lee, Tsuyoshi Terakawa, Zhi Qi, Justin B Steinfeld, Sy Redding, YoungHo Kwon, William A Gaines, Weixing Zhao, Patrick Sung, Eric C Greene. Science 2015
93
14

Sliding sleeves of XRCC4-XLF bridge DNA and connect fragments of broken DNA.
Ineke Brouwer, Gerrit Sitters, Andrea Candelli, Stephanie J Heerema, Iddo Heller, Abinadabe J de Melo, Hongshan Zhang, Davide Normanno, Mauro Modesti, Erwin J G Peterman,[...]. Nature 2016
90
14

Direct imaging of RecA nucleation and growth on single molecules of SSB-coated ssDNA.
Jason C Bell, Jody L Plank, Christopher C Dombrowski, Stephen C Kowalczykowski. Nature 2012
103
12

The BRC repeats of BRCA2 modulate the DNA-binding selectivity of RAD51.
Aura Carreira, Jovencio Hilario, Ichiro Amitani, Ronald J Baskin, Mahmud K K Shivji, Ashok R Venkitaraman, Stephen C Kowalczykowski. Cell 2009
164
12


Polymerization and mechanical properties of single RecA-DNA filaments.
M Hegner, S B Smith, C Bustamante. Proc Natl Acad Sci U S A 1999
152
12

STED nanoscopy combined with optical tweezers reveals protein dynamics on densely covered DNA.
Iddo Heller, Gerrit Sitters, Onno D Broekmans, Géraldine Farge, Carolin Menges, Wolfgang Wende, Stefan W Hell, Erwin J G Peterman, Gijs J L Wuite. Nat Methods 2013
103
12

Optical tweezers analysis of DNA-protein complexes.
Iddo Heller, Tjalle P Hoekstra, Graeme A King, Erwin J G Peterman, Gijs J L Wuite. Chem Rev 2014
86
12

Plk1 and CK2 act in concert to regulate Rad51 during DNA double strand break repair.
Keiko Yata, Janette Lloyd, Sarah Maslen, Jean-Yves Bleuyard, Mark Skehel, Stephen J Smerdon, Fumiko Esashi. Mol Cell 2012
111
12

Srs2 prevents Rad51 filament formation by repetitive motion on DNA.
Yupeng Qiu, Edwin Antony, Sultan Doganay, Hye Ran Koh, Timothy M Lohman, Sua Myong. Nat Commun 2013
69
12

Protein dynamics during presynaptic-complex assembly on individual single-stranded DNA molecules.
Bryan Gibb, Ling F Ye, YoungHo Kwon, Hengyao Niu, Patrick Sung, Eric C Greene. Nat Struct Mol Biol 2014
62
12

A Polar and Nucleotide-Dependent Mechanism of Action for RAD51 Paralogs in RAD51 Filament Remodeling.
Martin R G Taylor, Mário Špírek, Chu Jian Ma, Raffaella Carzaniga, Tohru Takaki, Lucy M Collinson, Eric C Greene, Lumir Krejci, Simon J Boulton. Mol Cell 2016
26
23



DNA strand exchange proteins: a biochemical and physical comparison.
P R Bianco, R B Tracy, S C Kowalczykowski. Front Biosci 1998
301
10

Structural transitions within human Rad51 nucleoprotein filaments.
Ragan B Robertson, Dana N Moses, YoungHo Kwon, Pamela Chan, Peter Chi, Hannah Klein, Patrick Sung, Eric C Greene. Proc Natl Acad Sci U S A 2009
33
15

Rad51 paralogues Rad55-Rad57 balance the antirecombinase Srs2 in Rad51 filament formation.
Jie Liu, Ludovic Renault, Xavier Veaute, Francis Fabre, Henning Stahlberg, Wolf-Dietrich Heyer. Nature 2011
138
10

DNA helicase Srs2 disrupts the Rad51 presynaptic filament.
Lumir Krejci, Stephen Van Komen, Ying Li, Jana Villemain, Mothe Sreedhar Reddy, Hannah Klein, Thomas Ellenberger, Patrick Sung. Nature 2003
479
10

Two classes of BRC repeats in BRCA2 promote RAD51 nucleoprotein filament function by distinct mechanisms.
Aura Carreira, Stephen C Kowalczykowski. Proc Natl Acad Sci U S A 2011
98
10

Homologous recombination and human health: the roles of BRCA1, BRCA2, and associated proteins.
Rohit Prakash, Yu Zhang, Weiran Feng, Maria Jasin. Cold Spring Harb Perspect Biol 2015
402
10

Mechanism of eukaryotic homologous recombination.
Joseph San Filippo, Patrick Sung, Hannah Klein. Annu Rev Biochem 2008
10

Crystal structure of a Rad51 filament.
Adam B Conway, Thomas W Lynch, Ying Zhang, Gary S Fortin, Cindy W Fung, Lorraine S Symington, Phoebe A Rice. Nat Struct Mol Biol 2004
225
10

See me, feel me: methods to concurrently visualize and manipulate single DNA molecules and associated proteins.
Joost van Mameren, Erwin J G Peterman, Gijs J L Wuite. Nucleic Acids Res 2008
68
10

Dissecting elastic heterogeneity along DNA molecules coated partly with Rad51 using concurrent fluorescence microscopy and optical tweezers.
Joost van Mameren, Mauro Modesti, Roland Kanaar, Claire Wyman, Gijs J L Wuite, Erwin J G Peterman. Biophys J 2006
41
12

A practical guide to single-molecule FRET.
Rahul Roy, Sungchul Hohng, Taekjip Ha. Nat Methods 2008
10

The cell-cycle checkpoint kinase Chk1 is required for mammalian homologous recombination repair.
Claus Storgaard Sørensen, Lasse Tengbjerg Hansen, Jaroslaw Dziegielewski, Randi G Syljuåsen, Cecilia Lundin, Jiri Bartek, Thomas Helleday. Nat Cell Biol 2005
481
10

Regulation of Rad51 function by c-Abl in response to DNA damage.
Z M Yuan, Y Huang, T Ishiko, S Nakada, T Utsugisawa, S Kharbanda, R Wang, P Sung, A Shinohara, R Weichselbaum,[...]. J Biol Chem 1998
169
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.