A citation-based method for searching scientific literature

Chad R Bernier, Anton S Petrov, Chris C Waterbury, James Jett, Fengbo Li, Larry E Freil, Xiao Xiong, Lan Wang, Blacki L R Migliozzi, Eli Hershkovits, Yuzhen Xue, Chiaolong Hsiao, Jessica C Bowman, Stephen C Harvey, Martha A Grover, Zachary J Wartell, Loren Dean Williams. Faraday Discuss 2014
Times Cited: 64







List of co-cited articles
526 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Structures of the human and Drosophila 80S ribosome.
Andreas M Anger, Jean-Paul Armache, Otto Berninghausen, Michael Habeck, Marion Subklewe, Daniel N Wilson, Roland Beckmann. Nature 2013
332
25

Secondary structures of rRNAs from all three domains of life.
Anton S Petrov, Chad R Bernier, Burak Gulen, Chris C Waterbury, Eli Hershkovits, Chiaolong Hsiao, Stephen C Harvey, Nicholas V Hud, George E Fox, Roger M Wartell,[...]. PLoS One 2014
71
21

Evolution of the ribosome at atomic resolution.
Anton S Petrov, Chad R Bernier, Chiaolong Hsiao, Ashlyn M Norris, Nicholas A Kovacs, Chris C Waterbury, Victor G Stepanov, Stephen C Harvey, George E Fox, Roger M Wartell,[...]. Proc Natl Acad Sci U S A 2014
95
21

The structure of the eukaryotic ribosome at 3.0 Å resolution.
Adam Ben-Shem, Nicolas Garreau de Loubresse, Sergey Melnikov, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Science 2011
742
20

One core, two shells: bacterial and eukaryotic ribosomes.
Sergey Melnikov, Adam Ben-Shem, Nicolas Garreau de Loubresse, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Nat Struct Mol Biol 2012
235
18

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding.
Jack A Dunkle, Leyi Wang, Michael B Feldman, Arto Pulk, Vincent B Chen, Gary J Kapral, Jonas Noeske, Jane S Richardson, Scott C Blanchard, Jamie H Doudna Cate. Science 2011
258
17

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs.
Jamie J Cannone, Sankar Subramanian, Murray N Schnare, James R Collett, Lisa M D'Souza, Yushi Du, Brian Feng, Nan Lin, Lakshmi V Madabusi, Kirsten M Müller,[...]. BMC Bioinformatics 2002
17

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.
N Ban, P Nissen, J Hansen, P B Moore, T A Steitz. Science 2000
17

Structure of the 70S ribosome complexed with mRNA and tRNA.
Maria Selmer, Christine M Dunham, Frank V Murphy, Albert Weixlbaumer, Sabine Petry, Ann C Kelley, John R Weir, V Ramakrishnan. Science 2006
949
15

Peeling the onion: ribosomes are ancient molecular fossils.
Chiaolong Hsiao, Srividya Mohan, Benson K Kalahar, Loren Dean Williams. Mol Biol Evol 2009
83
15

History of the ribosome and the origin of translation.
Anton S Petrov, Burak Gulen, Ashlyn M Norris, Nicholas A Kovacs, Chad R Bernier, Kathryn A Lanier, George E Fox, Stephen C Harvey, Roger M Wartell, Nicholas V Hud,[...]. Proc Natl Acad Sci U S A 2015
115
15

Translation: The Universal Structural Core of Life.
Chad R Bernier, Anton S Petrov, Nicholas A Kovacs, Petar I Penev, Loren Dean Williams. Mol Biol Evol 2018
26
38

Secondary structure and domain architecture of the 23S and 5S rRNAs.
Anton S Petrov, Chad R Bernier, Eli Hershkovits, Yuzhen Xue, Chris C Waterbury, Chiaolong Hsiao, Victor G Stepanov, Eric A Gaucher, Martha A Grover, Stephen C Harvey,[...]. Nucleic Acids Res 2013
50
18

Origin and evolution of the ribosome.
George E Fox. Cold Spring Harb Perspect Biol 2010
123
14

A hierarchical model for evolution of 23S ribosomal RNA.
Konstantin Bokov, Sergey V Steinberg. Nature 2009
136
14

Promiscuous behaviour of archaeal ribosomal proteins: implications for eukaryotic ribosome evolution.
Jean-Paul Armache, Andreas M Anger, Viter Márquez, Sibylle Franckenberg, Thomas Fröhlich, Elizabeth Villa, Otto Berninghausen, Michael Thomm, Georg J Arnold, Roland Beckmann,[...]. Nucleic Acids Res 2013
45
20

A new system for naming ribosomal proteins.
Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton,[...]. Curr Opin Struct Biol 2014
339
14


Molecular paleontology: a biochemical model of the ancestral ribosome.
Chiaolong Hsiao, Timothy K Lenz, Jessica K Peters, Po-Yu Fang, Dana M Schneider, Eric J Anderson, Thanawadee Preeprem, Jessica C Bowman, Eric B O'Neill, Lively Lie,[...]. Nucleic Acids Res 2013
29
27

Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.
Jean-Paul Armache, Alexander Jarasch, Andreas M Anger, Elizabeth Villa, Thomas Becker, Shashi Bhushan, Fabrice Jossinet, Michael Habeck, Gülcin Dindar, Sibylle Franckenberg,[...]. Proc Natl Acad Sci U S A 2010
142
10

Crystal structure of the eukaryotic ribosome.
Adam Ben-Shem, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Science 2010
287
10

Sequence analysis of 28S ribosomal DNA from the amphibian Xenopus laevis.
V C Ware, B W Tague, C G Clark, R L Gourse, R C Brand, S A Gerbi. Nucleic Acids Res 1983
150
10

An exit cavity was crucial to the polymerase activity of the early ribosome.
George E Fox, Quyen Tran, Ada Yonath. Astrobiology 2012
21
28

High resolution structure of the large ribosomal subunit from a mesophilic eubacterium.
J Harms, F Schluenzen, R Zarivach, A Bashan, S Gat, I Agmon, H Bartels, F Franceschi, A Yonath. Cell 2001
677
9

Structures of the bacterial ribosome at 3.5 A resolution.
Barbara S Schuwirth, Maria A Borovinskaya, Cathy W Hau, Wen Zhang, Antón Vila-Sanjurjo, James M Holton, Jamie H Doudna Cate. Science 2005
980
9



Hierarchy and dynamics of RNA folding.
P Brion, E Westhof. Annu Rev Biophys Biomol Struct 1997
402
9


The structural basis of ribosome activity in peptide bond synthesis.
P Nissen, J Hansen, N Ban, P B Moore, T A Steitz. Science 2000
9

Structure of the human 80S ribosome.
Heena Khatter, Alexander G Myasnikov, S Kundhavai Natchiar, Bruno P Klaholz. Nature 2015
247
9

Tuning the ribosome: The influence of rRNA modification on eukaryotic ribosome biogenesis and function.
Katherine E Sloan, Ahmed S Warda, Sunny Sharma, Karl-Dieter Entian, Denis L J Lafontaine, Markus T Bohnsack. RNA Biol 2017
253
9

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
9

The ribosomal peptidyl transferase center: structure, function, evolution, inhibition.
Norbert Polacek, Alexander S Mankin. Crit Rev Biochem Mol Biol 2005
107
9

Ribosome. The structure of the human mitochondrial ribosome.
Alexey Amunts, Alan Brown, Jaan Toots, Sjors H W Scheres, V Ramakrishnan. Science 2015
289
9

Frozen in Time: The History of Proteins.
Nicholas A Kovacs, Anton S Petrov, Kathryn A Lanier, Loren Dean Williams. Mol Biol Evol 2017
38
15

Secondary structure model for 23S ribosomal RNA.
H F Noller, J Kop, V Wheaton, J Brosius, R R Gutell, A M Kopylov, F Dohme, W Herr, D A Stahl, R Gupta,[...]. Nucleic Acids Res 1981
320
7


A vestige of a prebiotic bonding machine is functioning within the contemporary ribosome.
Miri Krupkin, Donna Matzov, Hua Tang, Markus Metz, Rinat Kalaora, Matthew J Belousoff, Ella Zimmerman, Anat Bashan, Ada Yonath. Philos Trans R Soc Lond B Biol Sci 2011
34
14

The origin and evolution of the ribosome.
Temple F Smith, Jung C Lee, Robin R Gutell, Hyman Hartman. Biol Direct 2008
51
9

High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome.
Yaser Hashem, Amedee des Georges, Jie Fu, Sarah N Buss, Fabrice Jossinet, Amy Jobe, Qin Zhang, Hstau Y Liao, Robert A Grassucci, Chandrajit Bajaj,[...]. Nature 2013
89
7


Structure of the 30S ribosomal subunit.
B T Wimberly, D E Brodersen, W M Clemons, R J Morgan-Warren, A P Carter, C Vonrhein, T Hartsch, V Ramakrishnan. Nature 2000
7

Cations in charge: magnesium ions in RNA folding and catalysis.
Jessica C Bowman, Timothy K Lenz, Nicholas V Hud, Loren Dean Williams. Curr Opin Struct Biol 2012
115
7

Domain III of the T. thermophilus 23S rRNA folds independently to a near-native state.
Shreyas S Athavale, J Jared Gossett, Chiaolong Hsiao, Jessica C Bowman, Eric O'Neill, Eli Hershkovitz, Thanawadee Preeprem, Nicholas V Hud, Roger M Wartell, Stephen C Harvey,[...]. RNA 2012
16
31

VARNA: Interactive drawing and editing of the RNA secondary structure.
Kévin Darty, Alain Denise, Yann Ponty. Bioinformatics 2009
692
7


The economics of ribosome biosynthesis in yeast.
J R Warner. Trends Biochem Sci 1999
7

Ribosomal protein-sequence block structure suggests complex prokaryotic evolution with implications for the origin of eukaryotes.
Prashanth Vishwanath, Paola Favaretto, Hyman Hartman, Scott C Mohr, Temple F Smith. Mol Phylogenet Evol 2004
35
14



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.