A citation-based method for searching scientific literature

Jennifer M Enright, Karen A Lawrence, Tarik Hadzic, Joseph C Corbo. J Comp Neurol 2015
Times Cited: 29







List of co-cited articles
260 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Cone photoreceptor types in zebrafish are generated by symmetric terminal divisions of dedicated precursors.
Sachihiro C Suzuki, Adam Bleckert, Philip R Williams, Masaki Takechi, Shoji Kawamura, Rachel O L Wong. Proc Natl Acad Sci U S A 2013
114
34

A thyroid hormone receptor that is required for the development of green cone photoreceptors.
L Ng, J B Hurley, B Dierks, M Srinivas, C Saltó, B Vennström, T A Reh, D Forrest. Nat Genet 2001
383
34

Transcriptional regulation of photoreceptor development and homeostasis in the mammalian retina.
Anand Swaroop, Douglas Kim, Douglas Forrest. Nat Rev Neurosci 2010
325
27

Nrl is required for rod photoreceptor development.
A J Mears, M Kondo, P K Swain, Y Takada, R A Bush, T L Saunders, P A Sieving, A Swaroop. Nat Genet 2001
658
24

Tbx2b is required for ultraviolet photoreceptor cell specification during zebrafish retinal development.
Karen Alvarez-Delfin, Ann C Morris, Corey D Snelson, Joshua T Gamse, Tripti Gupta, Florence L Marlow, Mary C Mullins, Harold A Burgess, Michael Granato, James M Fadool. Proc Natl Acad Sci U S A 2009
54
20


Crx, a novel Otx-like paired-homeodomain protein, binds to and transactivates photoreceptor cell-specific genes.
S Chen, Q L Wang, Z Nie, H Sun, G Lennon, N G Copeland, D J Gilbert, N A Jenkins, D J Zack. Neuron 1997
538
20

Epigenomic landscapes of retinal rods and cones.
Alisa Mo, Chongyuan Luo, Fred P Davis, Eran A Mukamel, Gilbert L Henry, Joseph R Nery, Mark A Urich, Serge Picard, Ryan Lister, Sean R Eddy,[...]. Elife 2016
72
20

CRX ChIP-seq reveals the cis-regulatory architecture of mouse photoreceptors.
Joseph C Corbo, Karen A Lawrence, Marcus Karlstetter, Connie A Myers, Musa Abdelaziz, William Dirkes, Karin Weigelt, Martin Seifert, Vladimir Benes, Lars G Fritsche,[...]. Genome Res 2010
126
20

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics.
Karthik Shekhar, Sylvain W Lapan, Irene E Whitney, Nicholas M Tran, Evan Z Macosko, Monika Kowalczyk, Xian Adiconis, Joshua Z Levin, James Nemesh, Melissa Goldman,[...]. Cell 2016
468
20

Retinoid X receptor (gamma) is necessary to establish the S-opsin gradient in cone photoreceptors of the developing mouse retina.
Melanie R Roberts, Anita Hendrickson, Christopher R McGuire, Thomas A Reh. Invest Ophthalmol Vis Sci 2005
147
20

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
20

Analysis of thyroid response element activity during retinal development.
Nathan A Billings, Mark M Emerson, Constance L Cepko. PLoS One 2010
21
28

Ontogeny of cone photoreceptor mosaics in zebrafish.
W Ted Allison, Linda K Barthel, Kristina M Skebo, Masaki Takechi, Shoji Kawamura, Pamela A Raymond. J Comp Neurol 2010
86
17

Homeobox transcription factor Six7 governs expression of green opsin genes in zebrafish.
Yohey Ogawa, Tomoya Shiraki, Daisuke Kojima, Yoshitaka Fukada. Proc Biol Sci 2015
22
22

Cyp27c1 Red-Shifts the Spectral Sensitivity of Photoreceptors by Converting Vitamin A1 into A2.
Jennifer M Enright, Matthew B Toomey, Shin-ya Sato, Shelby E Temple, James R Allen, Rina Fujiwara, Valerie M Kramlinger, Leslie D Nagy, Kevin M Johnson, Yi Xiao,[...]. Curr Biol 2015
72
17

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
17

Microarray analysis of the transcriptional network controlled by the photoreceptor homeobox gene Crx.
F J Livesey, T Furukawa, M A Steffen, G M Church, C L Cepko. Curr Biol 2000
217
17

Otx2 homeobox gene controls retinal photoreceptor cell fate and pineal gland development.
Akihiro Nishida, Akiko Furukawa, Chieko Koike, Yasuo Tano, Shinichi Aizawa, Isao Matsuo, Takahisa Furukawa. Nat Neurosci 2003
402
17

Recruitment of Rod Photoreceptors from Short-Wavelength-Sensitive Cones during the Evolution of Nocturnal Vision in Mammals.
Jung-Woong Kim, Hyun-Jin Yang, Adam Phillip Oel, Matthew John Brooks, Li Jia, David Charles Plachetzki, Wei Li, William Ted Allison, Anand Swaroop. Dev Cell 2016
62
17


Otx2 and Onecut1 promote the fates of cone photoreceptors and horizontal cells and repress rod photoreceptors.
Mark M Emerson, Natalia Surzenko, Jillian J Goetz, Jeffrey Trimarchi, Constance L Cepko. Dev Cell 2013
66
17

Temporal expression of L-Maf and RaxL in developing chicken retina are arranged into mosaic pattern.
Haruki Ochi, Kiyo Sakagami, Akiko Ishii, Natuko Morita, Masato Nishiuchi, Hajime Ogino, Kunio Yasuda. Gene Expr Patterns 2004
18
27


The developmental sequence of gene expression within the rod photoreceptor lineage in embryonic zebrafish.
Steve M Nelson, Ruth A Frey, Sheri L Wardwell, Deborah L Stenkamp. Dev Dyn 2008
41
13


A Cambrian origin for vertebrate rods.
Sabrina Asteriti, Sten Grillner, Lorenzo Cangiano. Elife 2015
29
13

Cone-rod dystrophy due to mutations in a novel photoreceptor-specific homeobox gene (CRX) essential for maintenance of the photoreceptor.
C L Freund, C Y Gregory-Evans, T Furukawa, M Papaioannou, J Looser, L Ploder, J Bellingham, D Ng, J A Herbrick, A Duncan,[...]. Cell 1997
435
13


Retinoic Acid Signaling Regulates Differential Expression of the Tandemly-Duplicated Long Wavelength-Sensitive Cone Opsin Genes in Zebrafish.
Diana M Mitchell, Craig B Stevens, Ruth A Frey, Samuel S Hunter, Ryuichi Ashino, Shoji Kawamura, Deborah L Stenkamp. PLoS Genet 2015
33
13

Expression profiling of the developing and mature Nrl-/- mouse retina: identification of retinal disease candidates and transcriptional regulatory targets of Nrl.
Shigeo Yoshida, Alan J Mears, James S Friedman, Todd Carter, Shirley He, Edwin Oh, Yuezhou Jing, Rafal Farjo, Gilles Fleury, Carrolee Barlow,[...]. Hum Mol Genet 2004
130
13

Cone-like morphological, molecular, and electrophysiological features of the photoreceptors of the Nrl knockout mouse.
Lauren L Daniele, Concepcion Lillo, Arkady L Lyubarsky, Sergei S Nikonov, Nancy Philp, Alan J Mears, Anand Swaroop, David S Williams, Edward N Pugh. Invest Ophthalmol Vis Sci 2005
160
13

Transcriptional code and disease map for adult retinal cell types.
Sandra Siegert, Erik Cabuy, Brigitte Gross Scherf, Hubertus Kohler, Satchidananda Panda, Yun-Zheng Le, Hans Jörg Fehling, Dimos Gaidatzis, Michael B Stadler, Botond Roska. Nat Neurosci 2012
176
13

The cis-regulatory logic of the mammalian photoreceptor transcriptional network.
Timothy H-C Hsiau, Claudiu Diaconu, Connie A Myers, Jongwoo Lee, Constance L Cepko, Joseph C Corbo. PLoS One 2007
107
13

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
13


The origin and evolution of cell types.
Detlev Arendt, Jacob M Musser, Clare V H Baker, Aviv Bergman, Connie Cepko, Douglas H Erwin, Mihaela Pavlicev, Gerhard Schlosser, Stefanie Widder, Manfred D Laubichler,[...]. Nat Rev Genet 2016
224
13

Transcripts within rod photoreceptors of the Zebrafish retina.
Chi Sun, Carlos Galicia, Deborah L Stenkamp. BMC Genomics 2018
16
25


Thyroid hormone components are expressed in three sequential waves during development of the chick retina.
Jeffrey M Trimarchi, Sanjiv Harpavat, Nathan A Billings, Constance L Cepko. BMC Dev Biol 2008
47
13

Electroporation and RNA interference in the rodent retina in vivo and in vitro.
Takahiko Matsuda, Constance L Cepko. Proc Natl Acad Sci U S A 2004
716
13


Thyroid hormone signaling specifies cone subtypes in human retinal organoids.
Kiara C Eldred, Sarah E Hadyniak, Katarzyna A Hussey, Boris Brenerman, Ping-Wu Zhang, Xitiz Chamling, Valentin M Sluch, Derek S Welsbie, Samer Hattar, James Taylor,[...]. Science 2018
75
13

Cell fate determination in the vertebrate retina.
C L Cepko, C P Austin, X Yang, M Alexiades, D Ezzeddine. Proc Natl Acad Sci U S A 1996
750
10

Complex effects of nucleotide variants in a mammalian cis-regulatory element.
Jamie C Kwasnieski, Ilaria Mogno, Connie A Myers, Joseph C Corbo, Barak A Cohen. Proc Natl Acad Sci U S A 2012
142
10

Patterning the cone mosaic array in zebrafish retina requires specification of ultraviolet-sensitive cones.
Pamela A Raymond, Steven M Colvin, Zahera Jabeen, Mikiko Nagashima, Linda K Barthel, Jeremy Hadidjojo, Lilia Popova, Vivek R Pejaver, David K Lubensky. PLoS One 2014
31
10


A mutation in NRL is associated with autosomal dominant retinitis pigmentosa.
D A Bessant, A M Payne, K P Mitton, Q L Wang, P K Swain, C Plant, A C Bird, D J Zack, A Swaroop, S S Bhattacharya. Nat Genet 1999
161
10

Vertebrate neural cell-fate determination: lessons from the retina.
F J Livesey, C L Cepko. Nat Rev Neurosci 2001
688
10

Evolutionary transformation of rod photoreceptors in the all-cone retina of a diurnal garter snake.
Ryan K Schott, Johannes Müller, Clement G Y Yang, Nihar Bhattacharyya, Natalie Chan, Mengshu Xu, James M Morrow, Ana-Hermina Ghenu, Ellis R Loew, Vincent Tropepe,[...]. Proc Natl Acad Sci U S A 2016
36
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.