A citation-based method for searching scientific literature

Ray Zhang, Nicholas F Lahens, Heather I Ballance, Michael E Hughes, John B Hogenesch. Proc Natl Acad Sci U S A 2014
Times Cited: 1081







List of co-cited articles
1224 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Diurnal transcriptome atlas of a primate across major neural and peripheral tissues.
Ludovic S Mure, Hiep D Le, Giorgia Benegiamo, Max W Chang, Luis Rios, Ngalla Jillani, Maina Ngotho, Thomas Kariuki, Ouria Dkhissi-Benyahya, Howard M Cooper,[...]. Science 2018
288
20

The orphan nuclear receptor REV-ERBalpha controls circadian transcription within the positive limb of the mammalian circadian oscillator.
Nicolas Preitner, Francesca Damiola, Luis Lopez-Molina, Joszef Zakany, Denis Duboule, Urs Albrecht, Ueli Schibler. Cell 2002
17

Transcriptional architecture and chromatin landscape of the core circadian clock in mammals.
Nobuya Koike, Seung-Hee Yoo, Hung-Chung Huang, Vivek Kumar, Choogon Lee, Tae-Kyung Kim, Joseph S Takahashi. Science 2012
847
16

Coordination of circadian timing in mammals.
Steven M Reppert, David R Weaver. Nature 2002
15


Molecular architecture of the mammalian circadian clock.
Carrie L Partch, Carla B Green, Joseph S Takahashi. Trends Cell Biol 2014
720
14

PERIOD2::LUCIFERASE real-time reporting of circadian dynamics reveals persistent circadian oscillations in mouse peripheral tissues.
Seung-Hee Yoo, Shin Yamazaki, Phillip L Lowrey, Kazuhiro Shimomura, Caroline H Ko, Ethan D Buhr, Sandra M Siepka, Hee-Kyung Hong, Won Jun Oh, Ook Joon Yoo,[...]. Proc Natl Acad Sci U S A 2004
14

Coordinated transcription of key pathways in the mouse by the circadian clock.
Satchidananda Panda, Marina P Antoch, Brooke H Miller, Andrew I Su, Andrew B Schook, Marty Straume, Peter G Schultz, Steve A Kay, Joseph S Takahashi, John B Hogenesch. Cell 2002
14

Central and peripheral circadian clocks in mammals.
Jennifer A Mohawk, Carla B Green, Joseph S Takahashi. Annu Rev Neurosci 2012
14

Reprogramming of the circadian clock by nutritional challenge.
Kristin L Eckel-Mahan, Vishal R Patel, Sara de Mateo, Ricardo Orozco-Solis, Nicholas J Ceglia, Saurabh Sahar, Sherry A Dilag-Penilla, Kenneth A Dyar, Pierre Baldi, Paolo Sassone-Corsi. Cell 2013
379
13

The Small Molecule Nobiletin Targets the Molecular Oscillator to Enhance Circadian Rhythms and Protect against Metabolic Syndrome.
Baokun He, Kazunari Nohara, Noheon Park, Yong-Sung Park, Bobby Guillory, Zhaoyang Zhao, Jose M Garcia, Nobuya Koike, Cheng Chi Lee, Joseph S Takahashi,[...]. Cell Metab 2016
234
13

The NAD+-dependent deacetylase SIRT1 modulates CLOCK-mediated chromatin remodeling and circadian control.
Yasukazu Nakahata, Milota Kaluzova, Benedetto Grimaldi, Saurabh Sahar, Jun Hirayama, Danica Chen, Leonard P Guarente, Paolo Sassone-Corsi. Cell 2008
941
12

Resetting of circadian time in peripheral tissues by glucocorticoid signaling.
A Balsalobre, S A Brown, L Marcacci, F Tronche, C Kellendonk, H M Reichardt, G Schütz, U Schibler. Science 2000
12

Extensive and divergent circadian gene expression in liver and heart.
Kai-Florian Storch, Ovidiu Lipan, Igor Leykin, N Viswanathan, Fred C Davis, Wing H Wong, Charles J Weitz. Nature 2002
12

Role of the CLOCK protein in the mammalian circadian mechanism.
N Gekakis, D Staknis, H B Nguyen, F C Davis, L D Wilsbacher, D P King, J S Takahashi, C J Weitz. Science 1998
11

SIRT1 regulates circadian clock gene expression through PER2 deacetylation.
Gad Asher, David Gatfield, Markus Stratmann, Hans Reinke, Charna Dibner, Florian Kreppel, Raul Mostoslavsky, Frederick W Alt, Ueli Schibler. Cell 2008
907
11

Time-restricted feeding without reducing caloric intake prevents metabolic diseases in mice fed a high-fat diet.
Megumi Hatori, Christopher Vollmers, Amir Zarrinpar, Luciano DiTacchio, Eric A Bushong, Shubhroz Gill, Mathias Leblanc, Amandine Chaix, Matthew Joens, James A J Fitzpatrick,[...]. Cell Metab 2012
984
11


Defining the Independence of the Liver Circadian Clock.
Kevin B Koronowski, Kenichiro Kinouchi, Patrick-Simon Welz, Jacob G Smith, Valentina M Zinna, Jiejun Shi, Muntaha Samad, Siwei Chen, Christophe N Magnan, Jason M Kinchen,[...]. Cell 2019
111
10

Generation of circadian rhythms in the suprachiasmatic nucleus.
Michael H Hastings, Elizabeth S Maywood, Marco Brancaccio. Nat Rev Neurosci 2018
257
10


Obesity and metabolic syndrome in circadian Clock mutant mice.
Fred W Turek, Corinne Joshu, Akira Kohsaka, Emily Lin, Ganka Ivanova, Erin McDearmon, Aaron Laposky, Sue Losee-Olson, Amy Easton, Dalan R Jensen,[...]. Science 2005
10

High-fat diet disrupts behavioral and molecular circadian rhythms in mice.
Akira Kohsaka, Aaron D Laposky, Kathryn Moynihan Ramsey, Carmela Estrada, Corinne Joshu, Yumiko Kobayashi, Fred W Turek, Joseph Bass. Cell Metab 2007
922
10

Interacting molecular loops in the mammalian circadian clock.
L P Shearman, S Sriram, D R Weaver, E S Maywood, I Chaves, B Zheng, K Kume, C C Lee, G T van der Horst, M H Hastings,[...]. Science 2000
994
9

Circadian clock feedback cycle through NAMPT-mediated NAD+ biosynthesis.
Kathryn Moynihan Ramsey, Jun Yoshino, Cynthia S Brace, Dana Abrassart, Yumiko Kobayashi, Biliana Marcheva, Hee-Kyung Hong, Jason L Chong, Ethan D Buhr, Choogon Lee,[...]. Science 2009
744
9

MetaCycle: an integrated R package to evaluate periodicity in large scale data.
Gang Wu, Ron C Anafi, Michael E Hughes, Karl Kornacker, John B Hogenesch. Bioinformatics 2016
184
9

Regulation of circadian behaviour and metabolism by REV-ERB-α and REV-ERB-β.
Han Cho, Xuan Zhao, Megumi Hatori, Ruth T Yu, Grant D Barish, Michael T Lam, Ling-Wa Chong, Luciano DiTacchio, Annette R Atkins, Christopher K Glass,[...]. Nature 2012
640
9

Time-Restricted Feeding Prevents Obesity and Metabolic Syndrome in Mice Lacking a Circadian Clock.
Amandine Chaix, Terry Lin, Hiep D Le, Max W Chang, Satchidananda Panda. Cell Metab 2019
212
9

Identification of small molecule activators of cryptochrome.
Tsuyoshi Hirota, Jae Wook Lee, Peter C St John, Mariko Sawa, Keiko Iwaisako, Takako Noguchi, Pagkapol Y Pongsawakul, Tim Sonntag, David K Welsh, David A Brenner,[...]. Science 2012
282
8

A functional genomics strategy reveals Rora as a component of the mammalian circadian clock.
Trey K Sato, Satchidananda Panda, Loren J Miraglia, Teresa M Reyes, Radu D Rudic, Peter McNamara, Kinnery A Naik, Garret A FitzGerald, Steve A Kay, John B Hogenesch. Neuron 2004
705
8

Circadian time signatures of fitness and disease.
Joseph Bass, Mitchell A Lazar. Science 2016
277
8

Early Time-Restricted Feeding Improves Insulin Sensitivity, Blood Pressure, and Oxidative Stress Even without Weight Loss in Men with Prediabetes.
Elizabeth F Sutton, Robbie Beyl, Kate S Early, William T Cefalu, Eric Ravussin, Courtney M Peterson. Cell Metab 2018
417
8

A database of tissue-specific rhythmically expressed human genes has potential applications in circadian medicine.
Marc D Ruben, Gang Wu, David F Smith, Robert E Schmidt, Lauren J Francey, Yin Yeng Lee, Ron C Anafi, John B Hogenesch. Sci Transl Med 2018
105
8

Circadian control of the immune system.
Christoph Scheiermann, Yuya Kunisaki, Paul S Frenette. Nat Rev Immunol 2013
508
8

Circadian control of the NAD+ salvage pathway by CLOCK-SIRT1.
Yasukazu Nakahata, Saurabh Sahar, Giuseppe Astarita, Milota Kaluzova, Paolo Sassone-Corsi. Science 2009
795
8

Medicine in the Fourth Dimension.
Christopher R Cederroth, Urs Albrecht, Joseph Bass, Steven A Brown, Jonas Dyhrfjeld-Johnsen, Frederic Gachon, Carla B Green, Michael H Hastings, Charlotte Helfrich-Förster, John B Hogenesch,[...]. Cell Metab 2019
126
8

Circadian rhythms and the molecular clock in cardiovascular biology and disease.
Sandra Crnko, Bastiaan C Du Pré, Joost P G Sluijter, Linda W Van Laake. Nat Rev Cardiol 2019
127
8

Harmonics of circadian gene transcription in mammals.
Michael E Hughes, Luciano DiTacchio, Kevin R Hayes, Christopher Vollmers, S Pulivarthy, Julie E Baggs, Satchidananda Panda, John B Hogenesch. PLoS Genet 2009
441
8

Obesity in mice with adipocyte-specific deletion of clock component Arntl.
Georgios K Paschos, Salam Ibrahim, Wen-Liang Song, Takeshige Kunieda, Gregory Grant, Teresa M Reyes, Christopher A Bradfield, Cheryl H Vaughan, Michael Eiden, Mojgan Masoodi,[...]. Nat Med 2012
273
8

Nobiletin fortifies mitochondrial respiration in skeletal muscle to promote healthy aging against metabolic challenge.
Kazunari Nohara, Venkata Mallampalli, Travis Nemkov, Marvin Wirianto, Jiah Yang, Youqiong Ye, Yuxiang Sun, Leng Han, Karyn A Esser, Eugenia Mileykovskaya,[...]. Nat Commun 2019
65
12

A circadian clock in macrophages controls inflammatory immune responses.
Maren Keller, Jeannine Mazuch, Ute Abraham, Gina D Eom, Erik D Herzog, Hans-Dieter Volk, Achim Kramer, Bert Maier. Proc Natl Acad Sci U S A 2009
489
8

Early aging and age-related pathologies in mice deficient in BMAL1, the core componentof the circadian clock.
Roman V Kondratov, Anna A Kondratova, Victoria Y Gorbacheva, Olena V Vykhovanets, Marina P Antoch. Genes Dev 2006
709
8

Competing E3 ubiquitin ligases govern circadian periodicity by degradation of CRY in nucleus and cytoplasm.
Seung-Hee Yoo, Jennifer A Mohawk, Sandra M Siepka, Yongli Shan, Seong Kwon Huh, Hee-Kyung Hong, Izabela Kornblum, Vivek Kumar, Nobuya Koike, Ming Xu,[...]. Cell 2013
204
7

mCRY1 and mCRY2 are essential components of the negative limb of the circadian clock feedback loop.
K Kume, M J Zylka, S Sriram, L P Shearman, D R Weaver, X Jin, E S Maywood, M H Hastings, S M Reppert. Cell 1999
7



Entrainment of the circadian clock in the liver by feeding.
K A Stokkan, S Yamazaki, H Tei, Y Sakaki, M Menaker. Science 2001
7

Molecular mechanisms and physiological importance of circadian rhythms.
Alina Patke, Michael W Young, Sofia Axelrod. Nat Rev Mol Cell Biol 2020
182
7

AMPK regulates the circadian clock by cryptochrome phosphorylation and degradation.
Katja A Lamia, Uma M Sachdeva, Luciano DiTacchio, Elliot C Williams, Jacqueline G Alvarez, Daniel F Egan, Debbie S Vasquez, Henry Juguilon, Satchidananda Panda, Reuben J Shaw,[...]. Science 2009
574
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.