A citation-based method for searching scientific literature

Sean C Patro, Sharmistha Pal, Yingtao Bi, Kenneth Lynn, Karam C Mounzer, Jay R Kostman, Ramana V Davuluri, Luis J Montaner. J Virol 2015
Times Cited: 17







List of co-cited articles
37 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Increased monocyte turnover from bone marrow correlates with severity of SIV encephalitis and CD163 levels in plasma.
Tricia H Burdo, Caroline Soulas, Krystyna Orzechowski, Jessica Button, Anitha Krishnan, Chie Sugimoto, Xavier Alvarez, Marcelo J Kuroda, Kenneth C Williams. PLoS Pathog 2010
144
23

Microbial translocation is a cause of systemic immune activation in chronic HIV infection.
Jason M Brenchley, David A Price, Timothy W Schacker, Tedi E Asher, Guido Silvestri, Srinivas Rao, Zachary Kazzaz, Ethan Bornstein, Olivier Lambotte, Daniel Altmann,[...]. Nat Med 2006
23

Soluble CD163 made by monocyte/macrophages is a novel marker of HIV activity in early and chronic infection prior to and after anti-retroviral therapy.
Tricia H Burdo, Margaret R Lentz, Patrick Autissier, Anitha Krishnan, Elkan Halpern, Scott Letendre, Eric S Rosenberg, Ronald J Ellis, Kenneth C Williams. J Infect Dis 2011
241
17

Tryptophan catabolism by indoleamine 2,3-dioxygenase 1 alters the balance of TH17 to regulatory T cells in HIV disease.
David Favre, Jeff Mold, Peter W Hunt, Bittoo Kanwar, P'ng Loke, Lillian Seu, Jason D Barbour, Margaret M Lowe, Anura Jayawardene, Francesca Aweeka,[...]. Sci Transl Med 2010
364
11



CD4 and CD8 T cell immune activation during chronic HIV infection: roles of homeostasis, HIV, type I IFN, and IL-7.
Marta Catalfamo, Christopher Wilhelm, Lueng Tcheung, Michael Proschan, Travis Friesen, Jung-Hyun Park, Joseph Adelsberger, Michael Baseler, Frank Maldarelli, Richard Davey,[...]. J Immunol 2011
83
11

Causal analysis approaches in Ingenuity Pathway Analysis.
Andreas Krämer, Jeff Green, Jack Pollard, Stuart Tugendreich. Bioinformatics 2014
11

Plasma levels of bacterial DNA correlate with immune activation and the magnitude of immune restoration in persons with antiretroviral-treated HIV infection.
Wei Jiang, Michael M Lederman, Peter Hunt, Scott F Sieg, Kathryn Haley, Benigno Rodriguez, Alan Landay, Jeffrey Martin, Elizabeth Sinclair, Ava I Asher,[...]. J Infect Dis 2009
448
11

Retinoblastoma protein induction by HIV viremia or CCR5 in monocytes exposed to HIV-1 mediates protection from activation-induced apoptosis: ex vivo and in vitro study.
Bethsebah Gekonge, Andrea D Raymond, Xiangfan Yin, Jay Kostman, Karam Mounzer, Ronald G Collman, Louise Showe, Luis J Montaner. J Leukoc Biol 2012
6
33

Soluble CD163, a novel marker of activated macrophages, is elevated and associated with noncalcified coronary plaque in HIV-infected patients.
Tricia H Burdo, Janet Lo, Suhny Abbara, Jeffrey Wei, Michelle E DeLelys, Fred Preffer, Eric S Rosenberg, Kenneth C Williams, Steven Grinspoon. J Infect Dis 2011
315
11

Circulating monocytes in HIV-1-infected viremic subjects exhibit an antiapoptosis gene signature and virus- and host-mediated apoptosis resistance.
Malavika S Giri, Michael Nebozyhn, Andrea Raymond, Bethsebah Gekonge, Aidan Hancock, Shenoa Creer, Calen Nicols, Malik Yousef, Andrea S Foulkes, Karam Mounzer,[...]. J Immunol 2009
69
11

Plasma levels of soluble CD14 independently predict mortality in HIV infection.
Netanya G Sandler, Handan Wand, Annelys Roque, Matthew Law, Martha C Nason, Daniel E Nixon, Court Pedersen, Kiat Ruxrungtham, Sharon R Lewin, Sean Emery,[...]. J Infect Dis 2011
783
11

Higher levels of circulating monocyte-platelet aggregates are correlated with viremia and increased sCD163 levels in HIV-1 infection.
Hua Liang, Zhaojun Duan, Dan Li, Dongliang Li, Zheng Wang, Li Ren, Tao Shen, Yiming Shao. Cell Mol Immunol 2015
28
11

HIV-1 immune activation induces Siglec-1 expression and enhances viral trans-infection in blood and tissue myeloid cells.
Maria Pino, Itziar Erkizia, Susana Benet, Elina Erikson, Maria Teresa Fernández-Figueras, Dolores Guerrero, Judith Dalmau, Dan Ouchi, Antonio Rausell, Angela Ciuffi,[...]. Retrovirology 2015
50
11

Monocyte heterogeneity underlying phenotypic changes in monocytes according to SIV disease stage.
Woong-Ki Kim, Yue Sun, Hien Do, Patrick Autissier, Elkan F Halpern, Michael Piatak, Jeffrey D Lifson, Tricia H Burdo, Michael S McGrath, Kenneth Williams. J Leukoc Biol 2010
77
11

Increased metallothionein gene expression, zinc, and zinc-dependent resistance to apoptosis in circulating monocytes during HIV viremia.
Andrea D Raymond, Bethsebah Gekonge, Malavika S Giri, Aidan Hancock, Emmanouil Papasavvas, Jihed Chehimi, Andrew V Kossenkov, Calen Nicols, Malik Yousef, Karam Mounzer,[...]. J Leukoc Biol 2010
27
11

Elevated numbers of CD163+ macrophages in hearts of simian immunodeficiency virus-infected monkeys correlate with cardiac pathology and fibrosis.
Joshua A Walker, Megan L Sulciner, Katherine D Nowicki, Andrew D Miller, Tricia H Burdo, Kenneth C Williams. AIDS Res Hum Retroviruses 2014
30
11

Unique monocyte subset in patients with AIDS dementia.
L Pulliam, R Gascon, M Stubblebine, D McGuire, M S McGrath. Lancet 1997
290
11

Differential expression of CD163 on monocyte subsets in healthy and HIV-1 infected individuals.
Emma Tippett, Wan-Jung Cheng, Clare Westhorpe, Paul U Cameron, Bruce J Brew, Sharon R Lewin, Anthony Jaworowski, Suzanne M Crowe. PLoS One 2011
70
11

Elevated sCD163 in plasma but not cerebrospinal fluid is a marker of neurocognitive impairment in HIV infection.
Tricia H Burdo, Allison Weiffenbach, Steven P Woods, Scott Letendre, Ronald J Ellis, Kenneth C Williams. AIDS 2013
190
11

T cell activation is associated with lower CD4+ T cell gains in human immunodeficiency virus-infected patients with sustained viral suppression during antiretroviral therapy.
Peter W Hunt, Jeffrey N Martin, Elizabeth Sinclair, Barry Bredt, Elilta Hagos, Harry Lampiris, Steven G Deeks. J Infect Dis 2003
661
11

CNS invasion by CD14+/CD16+ peripheral blood-derived monocytes in HIV dementia: perivascular accumulation and reservoir of HIV infection.
T Fischer-Smith, S Croul, A E Sverstiuk, C Capini, D L'Heureux, E G Régulier, M W Richardson, S Amini, S Morgello, K Khalili,[...]. J Neurovirol 2001
267
11

Gut epithelial barrier dysfunction and innate immune activation predict mortality in treated HIV infection.
Peter W Hunt, Elizabeth Sinclair, Benigno Rodriguez, Carey Shive, Brian Clagett, Nicholas Funderburg, Janet Robinson, Yong Huang, Lorrie Epling, Jeffrey N Martin,[...]. J Infect Dis 2014
320
11

Type I interferon responses in rhesus macaques prevent SIV infection and slow disease progression.
Netanya G Sandler, Steven E Bosinger, Jacob D Estes, Richard T R Zhu, Gregory K Tharp, Eli Boritz, Doron Levin, Sathi Wijeyesinghe, Krystelle Nganou Makamdop, Gregory Q del Prete,[...]. Nature 2014
323
11

Cross-sectional comparison of the prevalence of age-associated comorbidities and their risk factors between HIV-infected and uninfected individuals: the AGEhIV cohort study.
Judith Schouten, Ferdinand W Wit, Ineke G Stolte, Neeltje A Kootstra, Marc van der Valk, Suzanne E Geerlings, Maria Prins, Peter Reiss. Clin Infect Dis 2014
445
11

CCR2 on CD14(+)CD16(+) monocytes is a biomarker of HIV-associated neurocognitive disorders.
Dionna W Williams, Desiree Byrd, Leah H Rubin, Kathryn Anastos, Susan Morgello, Joan W Berman. Neurol Neuroimmunol Neuroinflamm 2014
44
11


Long-term control of HIV by CCR5 Delta32/Delta32 stem-cell transplantation.
Gero Hütter, Daniel Nowak, Maximilian Mossner, Susanne Ganepola, Arne Müssig, Kristina Allers, Thomas Schneider, Jörg Hofmann, Claudia Kücherer, Olga Blau,[...]. N Engl J Med 2009
11

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks.
Cole Trapnell, Adam Roberts, Loyal Goff, Geo Pertea, Daehwan Kim, David R Kelley, Harold Pimentel, Steven L Salzberg, John L Rinn, Lior Pachter. Nat Protoc 2012
11

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.
Daehwan Kim, Geo Pertea, Cole Trapnell, Harold Pimentel, Ryan Kelley, Steven L Salzberg. Genome Biol 2013
11

Interferome v2.0: an updated database of annotated interferon-regulated genes.
Irina Rusinova, Sam Forster, Simon Yu, Anitha Kannan, Marion Masse, Helen Cumming, Ross Chapman, Paul J Hertzog. Nucleic Acids Res 2013
492
11

HIV-1 and interferons: who's interfering with whom?
Tomas Doyle, Caroline Goujon, Michael H Malim. Nat Rev Microbiol 2015
190
11

Methylation regulation of Antiviral host factors, Interferon Stimulated Genes (ISGs) and T-cell responses associated with natural HIV control.
Bruna Oriol-Tordera, Maria Berdasco, Anuska Llano, Beatriz Mothe, Cristina Gálvez, Javier Martinez-Picado, Jorge Carrillo, Julià Blanco, Clara Duran-Castells, Carmela Ganoza,[...]. PLoS Pathog 2020
15
13

HIV downregulates interferon-stimulated genes in primary macrophages.
Seong-Heon Wie, Pinyi Du, Tiffany Q Luong, Steffney E Rought, Nadejda Beliakova-Bethell, Jean Lozach, Jacques Corbeil, Richard S Kornbluth, Douglas D Richman, Christopher H Woelk. J Interferon Cytokine Res 2013
22
11

Epigenome-wide differential DNA methylation between HIV-infected and uninfected individuals.
Xinyu Zhang, Amy C Justice, Ying Hu, Zuoheng Wang, Hongyu Zhao, Guilin Wang, Eric O Johnson, Brinda Emu, Richard E Sutton, John H Krystal,[...]. Epigenetics 2016
45
11

Interferons and HIV Infection: The Good, the Bad, and the Ugly.
Netanya S Utay, Daniel C Douek. Pathog Immun 2016
45
11


Human mononuclear phagocyte system reunited.
Muzlifah Haniffa, Venetia Bigley, Matthew Collin. Semin Cell Dev Biol 2015
75
5

Monocyte recruitment during infection and inflammation.
Chao Shi, Eric G Pamer. Nat Rev Immunol 2011
5

Human monocytes and macrophages differ in their mechanisms of adaptation to hypoxia.
Monique Fangradt, Martin Hahne, Timo Gaber, Cindy Strehl, Roman Rauch, Paula Hoff, Max Löhning, Gerd-Rüdiger Burmester, Frank Buttgereit. Arthritis Res Ther 2012
23
5

Cell tropism of simian immunodeficiency virus in culture is not predictive of in vivo tropism or pathogenesis.
Juan T Borda, Xavier Alvarez, Ivanela Kondova, Pyone Aye, Meredith A Simon, Ronald C Desrosiers, Andrew A Lackner. Am J Pathol 2004
33
5

Protective and pathogenic functions of macrophage subsets.
Peter J Murray, Thomas A Wynn. Nat Rev Immunol 2011
5

CCR3 and CCR5 are co-receptors for HIV-1 infection of microglia.
J He, Y Chen, M Farzan, H Choe, A Ohagen, S Gartner, J Busciglio, X Yang, W Hofmann, W Newman,[...]. Nature 1997
763
5

Tissue-resident macrophages: then and now.
Luke C Davies, Philip R Taylor. Immunology 2015
171
5

Simian immunodeficiency virus SIVrcm, a unique CCR2-tropic virus, selectively depletes memory CD4+ T cells in pigtailed macaques through expanded coreceptor usage in vivo.
Rajeev Gautam, Thaidra Gaufin, Isolde Butler, Aarti Gautam, Mary Barnes, Daniel Mandell, Melissa Pattison, Coty Tatum, Jeanne Macfarland, Christopher Monjure,[...]. J Virol 2009
21
5

Longitudinal analysis of simian immunodeficiency virus (SIV) replication in the lungs: compartmentalized regulation of SIV.
Sheila A Barber, Lucio Gama, Ming Li, Tauni Voelker, John E Anderson, M Christine Zink, Patrick M Tarwater, Lucy M Carruth, Janice E Clements. J Infect Dis 2006
29
5

Lung environment determines unique phenotype of alveolar macrophages.
Amanda M Guth, William J Janssen, Catharine M Bosio, Erika C Crouch, Peter M Henson, Steven W Dow. Am J Physiol Lung Cell Mol Physiol 2009
148
5

Limelight on two HIV/SIV accessory proteins in macrophage infection: is Vpx overshadowing Vpr?
Diana Ayinde, Claire Maudet, Catherine Transy, Florence Margottin-Goguet. Retrovirology 2010
56
5

Cell profile of BAL fluid in children and adolescents with and without lung disease.
Isabela Furtado de Mendonça Picinin, Paulo Augusto Moreira Camargos, Christophe Marguet. J Bras Pneumol 2010
7
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.