A citation-based method for searching scientific literature

Stefanie Gerstberger, Markus Hafner, Thomas Tuschl. Nat Rev Genet 2014
Times Cited: 843







List of co-cited articles
585 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


RNA-Binding Proteins in Cancer: Old Players and New Actors.
Bruno Pereira, Marc Billaud, Raquel Almeida. Trends Cancer 2017
230
25

A brave new world of RNA-binding proteins.
Matthias W Hentze, Alfredo Castello, Thomas Schwarzl, Thomas Preiss. Nat Rev Mol Cell Biol 2018
469
23

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.
Alfredo Castello, Bernd Fischer, Katrin Eichelbaum, Rastislav Horos, Benedikt M Beckmann, Claudia Strein, Norman E Davey, David T Humphreys, Thomas Preiss, Lars M Steinmetz,[...]. Cell 2012
19

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.
Alexander G Baltz, Mathias Munschauer, Björn Schwanhäusser, Alexandra Vasile, Yasuhiro Murakawa, Markus Schueler, Noah Youngs, Duncan Penfold-Brown, Kevin Drew, Miha Milek,[...]. Mol Cell 2012
719
13

RNA-binding proteins: modular design for efficient function.
Bradley M Lunde, Claire Moore, Gabriele Varani. Nat Rev Mol Cell Biol 2007
715
12

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP.
Markus Hafner, Markus Landthaler, Lukas Burger, Mohsen Khorshid, Jean Hausser, Philipp Berninger, Andrea Rothballer, Manuel Ascano, Anna-Carina Jungkamp, Mathias Munschauer,[...]. Cell 2010
12

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
12

The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs.
Benedikt M Beckmann, Rastislav Horos, Bernd Fischer, Alfredo Castello, Katrin Eichelbaum, Anne-Marie Alleaume, Thomas Schwarzl, Tomaž Curk, Sophia Foehr, Wolfgang Huber,[...]. Nat Commun 2015
238
11

clusterProfiler: an R package for comparing biological themes among gene clusters.
Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He. OMICS 2012
11

STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.
Damian Szklarczyk, Annika L Gable, David Lyon, Alexander Junge, Stefan Wyder, Jaime Huerta-Cepas, Milan Simonovic, Nadezhda T Doncheva, John H Morris, Peer Bork,[...]. Nucleic Acids Res 2019
10


How RNA-Binding Proteins Interact with RNA: Molecules and Mechanisms.
Meredith Corley, Margaret C Burns, Gene W Yeo. Mol Cell 2020
75
12

RNA-binding proteins and post-transcriptional gene regulation.
Tina Glisovic, Jennifer L Bachorik, Jeongsik Yong, Gideon Dreyfuss. FEBS Lett 2008
798
9

A compendium of RNA-binding motifs for decoding gene regulation.
Debashish Ray, Hilal Kazan, Kate B Cook, Matthew T Weirauch, Hamed S Najafabadi, Xiao Li, Serge Gueroussov, Mihai Albu, Hong Zheng, Ally Yang,[...]. Nature 2013
771
8

Comprehensive Identification of RNA-Binding Domains in Human Cells.
Alfredo Castello, Bernd Fischer, Christian K Frese, Rastislav Horos, Anne-Marie Alleaume, Sophia Foehr, Tomaz Curk, Jeroen Krijgsveld, Matthias W Hentze. Mol Cell 2016
254
8

Evolutionary conservation and expression of human RNA-binding proteins and their role in human genetic disease.
Stefanie Gerstberger, Markus Hafner, Manuel Ascano, Thomas Tuschl. Adv Exp Med Biol 2014
73
10

The Clothes Make the mRNA: Past and Present Trends in mRNP Fashion.
Guramrit Singh, Gabriel Pratt, Gene W Yeo, Melissa J Moore. Annu Rev Biochem 2015
199
8

Comprehensive Genomic Characterization of RNA-Binding Proteins across Human Cancers.
Ze-Lin Wang, Bin Li, Yu-Xia Luo, Qiao Lin, Shu-Rong Liu, Xiao-Qin Zhang, Hui Zhou, Jian-Hua Yang, Liang-Hu Qu. Cell Rep 2018
76
9


The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest.
Jakob Trendel, Thomas Schwarzl, Rastislav Horos, Ananth Prakash, Alex Bateman, Matthias W Hentze, Jeroen Krijgsveld. Cell 2019
120
7

Capturing the interactome of newly transcribed RNA.
Xichen Bao, Xiangpeng Guo, Menghui Yin, Muqddas Tariq, Yiwei Lai, Shahzina Kanwal, Jiajian Zhou, Na Li, Yuan Lv, Carlos Pulido-Quetglas,[...]. Nat Methods 2018
85
8

Principles and properties of eukaryotic mRNPs.
Sarah F Mitchell, Roy Parker. Mol Cell 2014
199
7

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
7

Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.
Freddie Bray, Jacques Ferlay, Isabelle Soerjomataram, Rebecca L Siegel, Lindsey A Torre, Ahmedin Jemal. CA Cancer J Clin 2018
7

RNA Binding Proteins in Intestinal Epithelial Biology and Colorectal Cancer.
Priya Chatterji, Anil K Rustgi. Trends Mol Med 2018
60
11



Sequence, Structure, and Context Preferences of Human RNA Binding Proteins.
Daniel Dominguez, Peter Freese, Maria S Alexis, Amanda Su, Myles Hochman, Tsultrim Palden, Cassandra Bazile, Nicole J Lambert, Eric L Van Nostrand, Gabriel A Pratt,[...]. Mol Cell 2018
165
7

Cancer the'RBP'eutics-RNA-binding proteins as therapeutic targets for cancer.
Shakur Mohibi, Xinbin Chen, Jin Zhang. Pharmacol Ther 2019
35
20

Integrated Bioinformatics Analysis the Function of RNA Binding Proteins (RBPs) and Their Prognostic Value in Breast Cancer.
Ke Wang, Ling Li, Liang Fu, Yongqiang Yuan, Hongying Dai, Tianjin Zhu, Yuxi Zhou, Fang Yuan. Front Pharmacol 2019
28
21

High-Resolution Mapping of RNA-Binding Regions in the Nuclear Proteome of Embryonic Stem Cells.
Chongsheng He, Simone Sidoli, Robert Warneford-Thomson, Deirdre C Tatomer, Jeremy E Wilusz, Benjamin A Garcia, Roberto Bonasio. Mol Cell 2016
135
6

Comprehensive identification of RNA-protein interactions in any organism using orthogonal organic phase separation (OOPS).
Rayner M L Queiroz, Tom Smith, Eneko Villanueva, Maria Marti-Solano, Mie Monti, Mariavittoria Pizzinga, Dan-Mircea Mirea, Manasa Ramakrishna, Robert F Harvey, Veronica Dezi,[...]. Nat Biotechnol 2019
102
6

Purification of cross-linked RNA-protein complexes by phenol-toluol extraction.
Erika C Urdaneta, Carlos H Vieira-Vieira, Timon Hick, Hans-Herrmann Wessels, Davide Figini, Rebecca Moschall, Jan Medenbach, Uwe Ohler, Sander Granneman, Matthias Selbach,[...]. Nat Commun 2019
76
7

Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture.
Joel I Perez-Perri, Birgit Rogell, Thomas Schwarzl, Frank Stein, Yang Zhou, Mandy Rettel, Annika Brosig, Matthias W Hentze. Nat Commun 2018
55
10

Cell type-restricted activity of hnRNPM promotes breast cancer metastasis via regulating alternative splicing.
Yilin Xu, Xin D Gao, Jae-Hyung Lee, Huilin Huang, Haiyan Tan, Jaegyoon Ahn, Lauren M Reinke, Marcus E Peter, Yue Feng, David Gius,[...]. Genes Dev 2014
139
6

Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S Baliga, Jonathan T Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker. Genome Res 2003
6

RNA-binding proteins in human genetic disease.
Kiven E Lukong, Kai-wei Chang, Edouard W Khandjian, Stéphane Richard. Trends Genet 2008
415
6

Development and validation of a RNA binding protein-associated prognostic model for lung adenocarcinoma.
Wei Li, Li-Na Gao, Pei-Pei Song, Chong-Ge You. Aging (Albany NY) 2020
24
25

HITS-CLIP yields genome-wide insights into brain alternative RNA processing.
Donny D Licatalosi, Aldo Mele, John J Fak, Jernej Ule, Melis Kayikci, Sung Wook Chi, Tyson A Clark, Anthony C Schweitzer, John E Blume, Xuning Wang,[...]. Nature 2008
903
6

Methods to study RNA-protein interactions.
Muthukumar Ramanathan, Douglas F Porter, Paul A Khavari. Nat Methods 2019
83
7

A General Framework for Interrogation of mRNA Stability Programs Identifies RNA-Binding Proteins that Govern Cancer Transcriptomes.
Gabrielle Perron, Pouria Jandaghi, Shraddha Solanki, Maryam Safisamghabadi, Cristina Storoz, Mehran Karimzadeh, Andreas I Papadakis, Madeleine Arseneault, Ghislaine Scelo, Rosamonde E Banks,[...]. Cell Rep 2018
31
16

A comprehensive expression landscape of RNA-binding proteins (RBPs) across 16 human cancer types.
Bin Zhang, Kamesh R Babu, Chun You Lim, Zhi Hao Kwok, Jia Li, Siqin Zhou, Henry Yang, Yvonne Tay. RNA Biol 2020
14
35

The RNA-binding protein RBM3 promotes cell proliferation in hepatocellular carcinoma by regulating circular RNA SCD-circRNA 2 production.
Wei Dong, Zhi-Hui Dai, Fu-Chen Liu, Xing-Gang Guo, Chun-Mei Ge, Jin Ding, Hui Liu, Fu Yang. EBioMedicine 2019
66
7

RBPDB: a database of RNA-binding specificities.
Kate B Cook, Hilal Kazan, Khalid Zuberi, Quaid Morris, Timothy R Hughes. Nucleic Acids Res 2011
288
5

The RNA-binding protein repertoire of embryonic stem cells.
S Chul Kwon, Hyerim Yi, Katrin Eichelbaum, Sophia Föhr, Bernd Fischer, Kwon Tae You, Alfredo Castello, Jeroen Krijgsveld, Matthias W Hentze, V Narry Kim. Nat Struct Mol Biol 2013
299
5

A large-scale binding and functional map of human RNA-binding proteins.
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez,[...]. Nature 2020
98
5

Serial interactome capture of the human cell nucleus.
Thomas Conrad, Anne-Susann Albrecht, Veronica Rodrigues de Melo Costa, Sascha Sauer, David Meierhofer, Ulf Andersson Ørom. Nat Commun 2016
71
7


RNA-binding proteins in Mendelian disease.
Alfredo Castello, Bernd Fischer, Matthias W Hentze, Thomas Preiss. Trends Genet 2013
160
5

Transcriptome-wide discovery of coding and noncoding RNA-binding proteins.
Rongbing Huang, Mengting Han, Liying Meng, Xing Chen. Proc Natl Acad Sci U S A 2018
67
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.