A citation-based method for searching scientific literature

Ranjith P Anand, Olga Tsaponina, Patricia W Greenwell, Cheng-Sheng Lee, Wei Du, Thomas D Petes, James E Haber. Genes Dev 2014
Times Cited: 71







List of co-cited articles
958 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Migrating bubble during break-induced replication drives conservative DNA synthesis.
Natalie Saini, Sreejith Ramakrishnan, Rajula Elango, Sandeep Ayyar, Yu Zhang, Angela Deem, Grzegorz Ira, James E Haber, Kirill S Lobachev, Anna Malkova. Nature 2013
220
43

Template switching during break-induced replication.
Catherine E Smith, Bertrand Llorente, Lorraine S Symington. Nature 2007
246
43


Break-induced replication and telomerase-independent telomere maintenance require Pol32.
John R Lydeard, Suvi Jain, Miyuki Yamaguchi, James E Haber. Nature 2007
347
35

Break-induced replication repair of damaged forks induces genomic duplications in human cells.
Lorenzo Costantino, Sotirios K Sotiriou, Juha K Rantala, Simon Magin, Emil Mladenov, Thomas Helleday, James E Haber, George Iliakis, Olli P Kallioniemi, Thanos D Halazonetis. Science 2014
284
33

Pif1 helicase and Polδ promote recombination-coupled DNA synthesis via bubble migration.
Marenda A Wilson, YoungHo Kwon, Yuanyuan Xu, Woo-Hyun Chung, Peter Chi, Hengyao Niu, Ryan Mayle, Xuefeng Chen, Anna Malkova, Patrick Sung,[...]. Nature 2013
204
32

Break-induced replication is highly inaccurate.
Angela Deem, Andrea Keszthelyi, Tiffany Blackgrove, Alexandra Vayl, Barbara Coffey, Ruchi Mathur, Andrei Chabes, Anna Malkova. PLoS Biol 2011
191
29

Translesion Polymerases Drive Microhomology-Mediated Break-Induced Replication Leading to Complex Chromosomal Rearrangements.
Cynthia J Sakofsky, Sandeep Ayyar, Angela K Deem, Woo-Hyun Chung, Grzegorz Ira, Anna Malkova. Mol Cell 2015
71
29


DNA REPAIR. Mus81 and converging forks limit the mutagenicity of replication fork breakage.
Ryan Mayle, Ian M Campbell, Christine R Beck, Yang Yu, Marenda Wilson, Chad A Shaw, Lotte Bjergbaek, James R Lupski, Grzegorz Ira. Science 2015
128
28

Break-induced replication is a source of mutation clusters underlying kataegis.
Cynthia J Sakofsky, Steven A Roberts, Ewa Malc, Piotr A Mieczkowski, Michael A Resnick, Dmitry A Gordenin, Anna Malkova. Cell Rep 2014
107
26

Break-induced replication occurs by conservative DNA synthesis.
Roberto A Donnianni, Lorraine S Symington. Proc Natl Acad Sci U S A 2013
120
26

Massive genomic rearrangement acquired in a single catastrophic event during cancer development.
Philip J Stephens, Chris D Greenman, Beiyuan Fu, Fengtang Yang, Graham R Bignell, Laura J Mudie, Erin D Pleasance, King Wai Lau, David Beare, Lucy A Stebbings,[...]. Cell 2011
25

Break-induced DNA replication.
Ranjith P Anand, Susan T Lovett, James E Haber. Cold Spring Harb Perspect Biol 2013
151
23

Chromosome catastrophes involve replication mechanisms generating complex genomic rearrangements.
Pengfei Liu, Ayelet Erez, Sandesh C Sreenath Nagamani, Shweta U Dhar, Katarzyna E Kołodziejska, Avinash V Dharmadhikari, M Lance Cooper, Joanna Wiszniewska, Feng Zhang, Marjorie A Withers,[...]. Cell 2011
291
22

Chromothripsis from DNA damage in micronuclei.
Cheng-Zhong Zhang, Alexander Spektor, Hauke Cornils, Joshua M Francis, Emily K Jackson, Shiwei Liu, Matthew Meyerson, David Pellman. Nature 2015
574
19


Defective break-induced replication leads to half-crossovers in Saccharomyces cerevisiae.
Angela Deem, Krista Barker, Kelly Vanhulle, Brandon Downing, Alexandra Vayl, Anna Malkova. Genetics 2008
76
18

Template switching during break-induced replication is promoted by the Mph1 helicase in Saccharomyces cerevisiae.
Anamarija Stafa, Roberto A Donnianni, Leonid A Timashev, Alicia F Lam, Lorraine S Symington. Genetics 2014
43
30

Break-induced replication requires all essential DNA replication factors except those specific for pre-RC assembly.
John R Lydeard, Zachary Lipkin-Moore, Yi-Jun Sheu, Bruce Stillman, Peter M Burgers, James E Haber. Genes Dev 2010
125
16


RAD51-dependent break-induced replication differs in kinetics and checkpoint responses from RAD51-mediated gene conversion.
Anna Malkova, Maria L Naylor, Miyuki Yamaguchi, Grzegorz Ira, James E Haber. Mol Cell Biol 2005
128
16

Mutational processes molding the genomes of 21 breast cancers.
Serena Nik-Zainal, Ludmil B Alexandrov, David C Wedge, Peter Van Loo, Christopher D Greenman, Keiran Raine, David Jones, Jonathan Hinton, John Marshall, Lucy A Stebbings,[...]. Cell 2012
16

Mechanisms underlying structural variant formation in genomic disorders.
Claudia M B Carvalho, James R Lupski. Nat Rev Genet 2016
292
16

Break-Induced Replication: The Where, The Why, and The How.
J Kramara, B Osia, A Malkova. Trends Genet 2018
101
16


Break-induced replication: functions and molecular mechanism.
Anna Malkova, Grzegorz Ira. Curr Opin Genet Dev 2013
117
15

RAD52 Facilitates Mitotic DNA Synthesis Following Replication Stress.
Rahul Bhowmick, Sheroy Minocherhomji, Ian D Hickson. Mol Cell 2016
191
15

RAD51-dependent break-induced replication in yeast.
Allison P Davis, Lorraine S Symington. Mol Cell Biol 2004
141
14


Cascades of genetic instability resulting from compromised break-induced replication.
Soumini Vasan, Angela Deem, Sreejith Ramakrishnan, Juan Lucas Argueso, Anna Malkova. PLoS Genet 2014
27
37




A recombination execution checkpoint regulates the choice of homologous recombination pathway during DNA double-strand break repair.
Suvi Jain, Neal Sugawara, John Lydeard, Moreshwar Vaze, Nicolas Tanguy Le Gac, James E Haber. Genes Dev 2009
99
14

DNA breaks and chromosome pulverization from errors in mitosis.
Karen Crasta, Neil J Ganem, Regina Dagher, Alexandra B Lantermann, Elena V Ivanova, Yunfeng Pan, Luigi Nezi, Alexei Protopopov, Dipanjan Chowdhury, David Pellman. Nature 2012
751
14

Srs2 and Sgs1-Top3 suppress crossovers during double-strand break repair in yeast.
Grzegorz Ira, Anna Malkova, Giordano Liberi, Marco Foiani, James E Haber. Cell 2003
454
14


The role of break-induced replication in large-scale expansions of (CAG)n/(CTG)n repeats.
Jane C Kim, Samantha T Harris, Teresa Dinter, Kartik A Shah, Sergei M Mirkin. Nat Struct Mol Biol 2017
53
18


Replicative mechanisms for CNV formation are error prone.
Claudia M B Carvalho, Davut Pehlivan, Melissa B Ramocki, Ping Fang, Benjamin Alleva, Luis M Franco, John W Belmont, P J Hastings, James R Lupski. Nat Genet 2013
91
12


Inverted genomic segments and complex triplication rearrangements are mediated by inverted repeats in the human genome.
Claudia M B Carvalho, Melissa B Ramocki, Davut Pehlivan, Luis M Franco, Claudia Gonzaga-Jauregui, Ping Fang, Alanna McCall, Eniko Karman Pivnick, Stacy Hines-Dowell, Laurie H Seaver,[...]. Nat Genet 2011
130
12

Chromothripsis as a mechanism driving complex de novo structural rearrangements in the germline.
Wigard P Kloosterman, Victor Guryev, Mark van Roosmalen, Karen J Duran, Ewart de Bruijn, Saskia C M Bakker, Tom Letteboer, Bernadette van Nesselrooij, Ron Hochstenbach, Martin Poot,[...]. Hum Mol Genet 2011
210
12

BRCA1 controls homologous recombination at Tus/Ter-stalled mammalian replication forks.
Nicholas A Willis, Gurushankar Chandramouly, Bin Huang, Amy Kwok, Cindy Follonier, Chuxia Deng, Ralph Scully. Nature 2014
94
12

Clustered mutations in yeast and in human cancers can arise from damaged long single-strand DNA regions.
Steven A Roberts, Joan Sterling, Cole Thompson, Shawn Harris, Deepak Mav, Ruchir Shah, Leszek J Klimczak, Gregory V Kryukov, Ewa Malc, Piotr A Mieczkowski,[...]. Mol Cell 2012
277
12

Break-induced replication: what is it and what is it for?
Bertrand Llorente, Catherine E Smith, Lorraine S Symington. Cell Cycle 2008
217
12

Sgs1 helicase and two nucleases Dna2 and Exo1 resect DNA double-strand break ends.
Zhu Zhu, Woo-Hyun Chung, Eun Yong Shim, Sang Eun Lee, Grzegorz Ira. Cell 2008
752
12

Defective resection at DNA double-strand breaks leads to de novo telomere formation and enhances gene targeting.
Woo-Hyun Chung, Zhu Zhu, Alma Papusha, Anna Malkova, Grzegorz Ira. PLoS Genet 2010
131
12



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.