A citation-based method for searching scientific literature

Lu Chen, Weichen Zhou, Cheng Zhang, James R Lupski, Li Jin, Feng Zhang. Hum Mol Genet 2015
Times Cited: 11







List of co-cited articles
109 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



De novo CNV formation in mouse embryonic stem cells occurs in the absence of Xrcc4-dependent nonhomologous end joining.
Martin F Arlt, Sountharia Rajendran, Shanda R Birkeland, Thomas E Wilson, Thomas W Glover. PLoS Genet 2012
46
45

Large-scale copy number polymorphism in the human genome.
Jonathan Sebat, B Lakshmi, Jennifer Troge, Joan Alexander, Janet Young, Pär Lundin, Susanne Månér, Hillary Massa, Megan Walker, Maoyen Chi,[...]. Science 2004
36

Replication stress induces genome-wide copy number changes in human cells that resemble polymorphic and pathogenic variants.
Martin F Arlt, Jennifer G Mulle, Valerie M Schaibley, Ryan L Ragland, Sandra G Durkin, Stephen T Warren, Thomas W Glover. Am J Hum Genet 2009
103
36

Large transcription units unify copy number variants and common fragile sites arising under replication stress.
Thomas E Wilson, Martin F Arlt, So Hae Park, Sountharia Rajendran, Michelle Paulsen, Mats Ljungman, Thomas W Glover. Genome Res 2015
102
36

Translesion Polymerases Drive Microhomology-Mediated Break-Induced Replication Leading to Complex Chromosomal Rearrangements.
Cynthia J Sakofsky, Sandeep Ayyar, Angela K Deem, Woo-Hyun Chung, Grzegorz Ira, Anna Malkova. Mol Cell 2015
69
36


Mechanisms of change in gene copy number.
P J Hastings, James R Lupski, Susan M Rosenberg, Grzegorz Ira. Nat Rev Genet 2009
731
36

Differential relationship of DNA replication timing to different forms of human mutation and variation.
Amnon Koren, Paz Polak, James Nemesh, Jacob J Michaelson, Jonathan Sebat, Shamil R Sunyaev, Steven A McCarroll. Am J Hum Genet 2012
149
27

Recent segmental duplications in the human genome.
Jeffrey A Bailey, Zhiping Gu, Royden A Clark, Knut Reinert, Rhea V Samonte, Stuart Schwartz, Mark D Adams, Eugene W Myers, Peter W Li, Evan E Eichler. Science 2002
935
27

The DNA replication FoSTeS/MMBIR mechanism can generate genomic, genic and exonic complex rearrangements in humans.
Feng Zhang, Mehrdad Khajavi, Anne M Connolly, Charles F Towne, Sat Dev Batish, James R Lupski. Nat Genet 2009
300
27


Genome architecture, rearrangements and genomic disorders.
Paweł Stankiewicz, James R Lupski. Trends Genet 2002
627
27

Inverted genomic segments and complex triplication rearrangements are mediated by inverted repeats in the human genome.
Claudia M B Carvalho, Melissa B Ramocki, Davut Pehlivan, Luis M Franco, Claudia Gonzaga-Jauregui, Ping Fang, Alanna McCall, Eniko Karman Pivnick, Stacy Hines-Dowell, Laurie H Seaver,[...]. Nat Genet 2011
128
27

Origins and functional impact of copy number variation in the human genome.
Donald F Conrad, Dalila Pinto, Richard Redon, Lars Feuk, Omer Gokcumen, Yujun Zhang, Jan Aerts, T Daniel Andrews, Chris Barnes, Peter Campbell,[...]. Nature 2010
27

Recurrent HERV-H-mediated 3q13.2-q13.31 deletions cause a syndrome of hypotonia and motor, language, and cognitive delays.
Andrey Shuvarikov, Ian M Campbell, Piotr Dittwald, Nicholas J Neill, Martin G Bialer, Christine Moore, Patricia G Wheeler, Stephanie E Wallace, Mark C Hannibal, Michael F Murray,[...]. Hum Mutat 2013
29
27

NAHR-mediated copy-number variants in a clinical population: mechanistic insights into both genomic disorders and Mendelizing traits.
Piotr Dittwald, Tomasz Gambin, Przemyslaw Szafranski, Jian Li, Stephen Amato, Michael Y Divon, Lisa Ximena Rodríguez Rojas, Lindsay E Elton, Daryl A Scott, Christian P Schaaf,[...]. Genome Res 2013
78
27

Frequency of nonallelic homologous recombination is correlated with length of homology: evidence that ectopic synapsis precedes ectopic crossing-over.
Pengfei Liu, Melanie Lacaria, Feng Zhang, Marjorie Withers, P J Hastings, James R Lupski. Am J Hum Genet 2011
74
27



Hydroxyurea induces de novo copy number variants in human cells.
Martin F Arlt, Alev Cagla Ozdemir, Shanda R Birkeland, Thomas E Wilson, Thomas W Glover. Proc Natl Acad Sci U S A 2011
62
27

Copy number variants are produced in response to low-dose ionizing radiation in cultured cells.
Martin F Arlt, Sountharia Rajendran, Shanda R Birkeland, Thomas E Wilson, Thomas W Glover. Environ Mol Mutagen 2014
30
27

Mechanisms for recurrent and complex human genomic rearrangements.
Pengfei Liu, Claudia M B Carvalho, P J Hastings, James R Lupski. Curr Opin Genet Dev 2012
216
27

The Alu-rich genomic architecture of SPAST predisposes to diverse and functionally distinct disease-associated CNV alleles.
Philip M Boone, Bo Yuan, Ian M Campbell, Jennifer C Scull, Marjorie A Withers, Brett C Baggett, Christine R Beck, Christine J Shaw, Pawel Stankiewicz, Paolo Moretti,[...]. Am J Hum Genet 2014
60
27

DNA REPAIR. Mus81 and converging forks limit the mutagenicity of replication fork breakage.
Ryan Mayle, Ian M Campbell, Christine R Beck, Yang Yu, Marenda Wilson, Chad A Shaw, Lotte Bjergbaek, James R Lupski, Grzegorz Ira. Science 2015
125
27

Alu-mediated diverse and complex pathogenic copy-number variants within human chromosome 17 at p13.3.
Shen Gu, Bo Yuan, Ian M Campbell, Christine R Beck, Claudia M B Carvalho, Sandesh C S Nagamani, Ayelet Erez, Ankita Patel, Carlos A Bacino, Chad A Shaw,[...]. Hum Mol Genet 2015
55
27

Pif1 helicase and Polδ promote recombination-coupled DNA synthesis via bubble migration.
Marenda A Wilson, YoungHo Kwon, Yuanyuan Xu, Woo-Hyun Chung, Peter Chi, Hengyao Niu, Ryan Mayle, Xuefeng Chen, Anna Malkova, Patrick Sung,[...]. Nature 2013
199
27

Replicative mechanisms for CNV formation are error prone.
Claudia M B Carvalho, Davut Pehlivan, Melissa B Ramocki, Ping Fang, Benjamin Alleva, Luis M Franco, John W Belmont, P J Hastings, James R Lupski. Nat Genet 2013
90
27

The role of microhomology in genomic structural variation.
Diego Ottaviani, Magdalena LeCain, Denise Sheer. Trends Genet 2014
97
27

Copy number polymorphism in plant genomes.
Agnieszka Żmieńko, Anna Samelak, Piotr Kozłowski, Marek Figlerowicz. Theor Appl Genet 2014
98
27

A copy number variation map of the human genome.
Mehdi Zarrei, Jeffrey R MacDonald, Daniele Merico, Stephen W Scherer. Nat Rev Genet 2015
383
27

Environmental change drives accelerated adaptation through stimulated copy number variation.
Ryan M Hull, Cristina Cruz, Carmen V Jack, Jonathan Houseley. PLoS Biol 2017
45
27

Segmental duplications and copy-number variation in the human genome.
Andrew J Sharp, Devin P Locke, Sean D McGrath, Ze Cheng, Jeffrey A Bailey, Rhea U Vallente, Lisa M Pertz, Royden A Clark, Stuart Schwartz, Rick Segraves,[...]. Am J Hum Genet 2005
664
18

Mechanisms for nonrecurrent genomic rearrangements associated with CMT1A or HNPP: rare CNVs as a cause for missing heritability.
Feng Zhang, Pavel Seeman, Pengfei Liu, Marian A J Weterman, Claudia Gonzaga-Jauregui, Charles F Towne, Sat Dev Batish, Els De Vriendt, Peter De Jonghe, Bernd Rautenstrauss,[...]. Am J Hum Genet 2010
91
18

A recurrent translocation is mediated by homologous recombination between HERV-H elements.
Karen E Hermetz, Urvashi Surti, Jannine D Cody, M Katharine Rudd. Mol Cytogenet 2012
14
18

Initial sequencing and analysis of the human genome.
E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh,[...]. Nature 2001
18

Genome destabilization by homologous recombination in the germ line.
Mariko Sasaki, Julian Lange, Scott Keeney. Nat Rev Mol Cell Biol 2010
141
18

Ancestral reconstruction of segmental duplications reveals punctuated cores of human genome evolution.
Zhaoshi Jiang, Haixu Tang, Mario Ventura, Maria Francesca Cardone, Tomas Marques-Bonet, Xinwei She, Pavel A Pevzner, Evan E Eichler. Nat Genet 2007
130
18

Complex gene rearrangements caused by serial replication slippage.
Jian-Min Chen, Nadia Chuzhanova, Peter D Stenson, Claude Férec, David N Cooper. Hum Mutat 2005
77
18


Inverted low-copy repeats and genome instability--a genome-wide analysis.
Piotr Dittwald, Tomasz Gambin, Claudia Gonzaga-Jauregui, Claudia M B Carvalho, James R Lupski, Paweł Stankiewicz, Anna Gambin. Hum Mutat 2013
39
18

Detection of large-scale variation in the human genome.
A John Iafrate, Lars Feuk, Miguel N Rivera, Marc L Listewnik, Patricia K Donahoe, Ying Qi, Stephen W Scherer, Charles Lee. Nat Genet 2004
18

Somatic mosaicism: implications for disease and transmission genetics.
Ian M Campbell, Chad A Shaw, Pawel Stankiewicz, James R Lupski. Trends Genet 2015
150
18

Next-generation sequencing of duplication CNVs reveals that most are tandem and some create fusion genes at breakpoints.
Scott Newman, Karen E Hermetz, Brooke Weckselblatt, M Katharine Rudd. Am J Hum Genet 2015
81
18

The rate of nonallelic homologous recombination in males is highly variable, correlated between monozygotic twins and independent of age.
Jacqueline A L MacArthur, Timothy D Spector, Sarah J Lindsay, Massimo Mangino, Raj Gill, Kerrin S Small, Matthew E Hurles. PLoS Genet 2014
12
18

Large inverted duplications in the human genome form via a fold-back mechanism.
Karen E Hermetz, Scott Newman, Karen N Conneely, Christa L Martin, Blake C Ballif, Lisa G Shaffer, Jannine D Cody, M Katharine Rudd. PLoS Genet 2014
33
18

Nonallelic homologous recombination between retrotransposable elements is a driver of de novo unbalanced translocations.
Caroline Robberecht, Thierry Voet, Masoud Zamani Esteki, Beata A Nowakowska, Joris R Vermeesch. Genome Res 2013
54
18

The genome-wide effects of ionizing radiation on mutation induction in the mammalian germline.
Adeolu B Adewoye, Sarah J Lindsay, Yuri E Dubrova, Matthew E Hurles. Nat Commun 2015
70
18

Tandem repeats and G-rich sequences are enriched at human CNV breakpoints.
Promita Bose, Karen E Hermetz, Karen N Conneely, M Katharine Rudd. PLoS One 2014
25
18

Declaring the existence of human germ-cell mutagens.
David M Demarini. Environ Mol Mutagen 2012
44
18


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.