A citation-based method for searching scientific literature

Nigel C Bennett, Camile S Farah. Cancers (Basel) 2014
Times Cited: 33







List of co-cited articles
160 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


College of American Pathologists' laboratory standards for next-generation sequencing clinical tests.
Nazneen Aziz, Qin Zhao, Lynn Bry, Denise K Driscoll, Birgit Funke, Jane S Gibson, Wayne W Grody, Madhuri R Hegde, Gerald A Hoeltge, Debra G B Leonard,[...]. Arch Pathol Lab Med 2015
184
33

ACMG clinical laboratory standards for next-generation sequencing.
Heidi L Rehm, Sherri J Bale, Pinar Bayrak-Toydemir, Jonathan S Berg, Kerry K Brown, Joshua L Deignan, Michael J Friez, Birgit H Funke, Madhuri R Hegde, Elaine Lyon. Genet Med 2013
508
30

Assuring the quality of next-generation sequencing in clinical laboratory practice.
Amy S Gargis, Lisa Kalman, Meredith W Berry, David P Bick, David P Dimmock, Tina Hambuch, Fei Lu, Elaine Lyon, Karl V Voelkerding, Barbara A Zehnbauer,[...]. Nat Biotechnol 2012
295
24

Clinical validation of a next-generation sequencing screen for mutational hotspots in 46 cancer-related genes.
Rajesh R Singh, Keyur P Patel, Mark J Routbort, Neelima G Reddy, Bedia A Barkoh, Brian Handal, Rashmi Kanagal-Shamanna, Wesley O Greaves, L Jeffrey Medeiros, Kenneth D Aldape,[...]. J Mol Diagn 2013
237
18

Guidance for laboratories performing molecular pathology for cancer patients.
Ian A Cree, Zandra Deans, Marjolijn J L Ligtenberg, Nicola Normanno, Anders Edsjö, Etienne Rouleau, Francesc Solé, Erik Thunnissen, Wim Timens, Ed Schuuring,[...]. J Clin Pathol 2014
95
15

Expanding the computational toolbox for mining cancer genomes.
Li Ding, Michael C Wendl, Joshua F McMichael, Benjamin J Raphael. Nat Rev Genet 2014
115
15

Next-generation sequencing to guide cancer therapy.
Jeffrey Gagan, Eliezer M Van Allen. Genome Med 2015
146
15

Next-generation sequencing: a change of paradigm in molecular diagnostic validation.
Manuel Salto-Tellez, David Gonzalez de Castro. J Pathol 2014
50
12

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.
Sue Richards, Nazneen Aziz, Sherri Bale, David Bick, Soma Das, Julie Gastier-Foster, Wayne W Grody, Madhuri Hegde, Elaine Lyon, Elaine Spector,[...]. Genet Med 2015
12

Development and validation of a clinical cancer genomic profiling test based on massively parallel DNA sequencing.
Garrett M Frampton, Alex Fichtenholtz, Geoff A Otto, Kai Wang, Sean R Downing, Jie He, Michael Schnall-Levin, Jared White, Eric M Sanford, Peter An,[...]. Nat Biotechnol 2013
12


Factors affecting the success of next-generation sequencing in cytology specimens.
Sinchita Roy-Chowdhuri, Rashmi S Goswami, Hui Chen, Keyur P Patel, Mark J Routbort, Rajesh R Singh, Russell R Broaddus, Bedia A Barkoh, Jawad Manekia, Hui Yao,[...]. Cancer Cytopathol 2015
80
12

Comparison of Sanger sequencing, pyrosequencing, and melting curve analysis for the detection of KRAS mutations: diagnostic and clinical implications.
Athanasios C Tsiatis, Alexis Norris-Kirby, Roy G Rich, Michael J Hafez, Christopher D Gocke, James R Eshleman, Kathleen M Murphy. J Mol Diagn 2010
306
12

Best practice guidelines for the use of next-generation sequencing applications in genome diagnostics: a national collaborative study of Dutch genome diagnostic laboratories.
Marjan M Weiss, Bert Van der Zwaag, Jan D H Jongbloed, Maartje J Vogel, Hennie T Brüggenwirth, Ronald H Lekanne Deprez, Olaf Mook, Claudia A L Ruivenkamp, Marjon A van Slegtenhorst, Arthur van den Wijngaard,[...]. Hum Mutat 2013
64
12

Implementing personalized cancer genomics in clinical trials.
Richard Simon, Sameek Roychowdhury. Nat Rev Drug Discov 2013
183
12

Sequencing technologies - the next generation.
Michael L Metzker. Nat Rev Genet 2010
12

ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing.
Robert C Green, Jonathan S Berg, Wayne W Grody, Sarah S Kalia, Bruce R Korf, Christa L Martin, Amy L McGuire, Robert L Nussbaum, Julianne M O'Daniel, Kelly E Ormond,[...]. Genet Med 2013
12

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
12

Next-Generation Sequencing in Clinical Molecular Diagnostics of Cancer: Advantages and Challenges.
Rajyalakshmi Luthra, Hui Chen, Sinchita Roy-Chowdhuri, R Rajesh Singh. Cancers (Basel) 2015
72
12

Next-generation sequencing for cancer diagnostics: a practical perspective.
Cliff Meldrum, Maria A Doyle, Richard W Tothill. Clin Biochem Rev 2011
217
9

Validation of next generation sequencing technologies in comparison to current diagnostic gold standards for BRAF, EGFR and KRAS mutational analysis.
Clare M McCourt, Darragh G McArt, Ken Mills, Mark A Catherwood, Perry Maxwell, David J Waugh, Peter Hamilton, Joe M O'Sullivan, Manuel Salto-Tellez. PLoS One 2013
72
9

Next generation diagnostic molecular pathology: critical appraisal of quality assurance in Europe.
Hendrikus J Dubbink, Zandra C Deans, Bastiaan B J Tops, Folkert J van Kemenade, S Koljenović, Han J M van Krieken, Willeke A M Blokx, Winand N M Dinjens, Patricia J T A Groenen. Mol Oncol 2014
34
9

Crizotinib in ROS1-rearranged non-small-cell lung cancer.
Alice T Shaw, Sai-Hong I Ou, Yung-Jue Bang, D Ross Camidge, Benjamin J Solomon, Ravi Salgia, Gregory J Riely, Marileila Varella-Garcia, Geoffrey I Shapiro, Daniel B Costa,[...]. N Engl J Med 2014
9

Technical and implementation issues in using next-generation sequencing of cancers in clinical practice.
D Ulahannan, M B Kovac, P J Mulholland, J-B Cazier, I Tomlinson. Br J Cancer 2013
57
9

Next-generation sequencing-based multigene mutational screening for acute myeloid leukemia using MiSeq: applicability for diagnostics and disease monitoring.
Rajyalakshmi Luthra, Keyur P Patel, Neelima G Reddy, Varan Haghshenas, Mark J Routbort, Michael A Harmon, Bedia A Barkoh, Rashmi Kanagal-Shamanna, Farhad Ravandi, Jorge E Cortes,[...]. Haematologica 2014
120
9

Next-generation sequencing-based multi-gene mutation profiling of solid tumors using fine needle aspiration samples: promises and challenges for routine clinical diagnostics.
Rashmi Kanagal-Shamanna, Bryce P Portier, Rajesh R Singh, Mark J Routbort, Kenneth D Aldape, Brian A Handal, Hamed Rahimi, Neelima G Reddy, Bedia A Barkoh, Bal M Mishra,[...]. Mod Pathol 2014
135
9

Molecular portraits of human breast tumours.
C M Perou, T Sørlie, M B Eisen, M van de Rijn, S S Jeffrey, C A Rees, J R Pollack, D T Ross, H Johnsen, L A Akslen,[...]. Nature 2000
9

Library construction for next-generation sequencing: overviews and challenges.
Steven R Head, H Kiyomi Komori, Sarah A LaMere, Thomas Whisenant, Filip Van Nieuwerburgh, Daniel R Salomon, Phillip Ordoukhanian. Biotechniques 2014
228
9

Comparison of targeted next-generation sequencing (NGS) and real-time PCR in the detection of EGFR, KRAS, and BRAF mutations on formalin-fixed, paraffin-embedded tumor material of non-small cell lung carcinoma-superiority of NGS.
Katja Tuononen, Satu Mäki-Nevala, Virinder Kaur Sarhadi, Aino Wirtanen, Mikko Rönty, Kaisa Salmenkivi, Jenny M Andrews, Aino I Telaranta-Keerie, Sari Hannula, Sonja Lagström,[...]. Genes Chromosomes Cancer 2013
100
9

Detecting somatic point mutations in cancer genome sequencing data: a comparison of mutation callers.
Qingguo Wang, Peilin Jia, Fei Li, Haiquan Chen, Hongbin Ji, Donald Hucks, Kimberly Brown Dahlman, William Pao, Zhongming Zhao. Genome Med 2013
109
9

A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers.
Michael A Quail, Miriam Smith, Paul Coupland, Thomas D Otto, Simon R Harris, Thomas R Connor, Anna Bertoni, Harold P Swerdlow, Yong Gu. BMC Genomics 2012
971
9

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge.
Catherine A Brownstein, Alan H Beggs, Nils Homer, Barry Merriman, Timothy W Yu, Katherine C Flannery, Elizabeth T DeChene, Meghan C Towne, Sarah K Savage, Emily N Price,[...]. Genome Biol 2014
71
9

A decision support framework for genomically informed investigational cancer therapy.
Funda Meric-Bernstam, Amber Johnson, Vijaykumar Holla, Ann Marie Bailey, Lauren Brusco, Ken Chen, Mark Routbort, Keyur P Patel, Jia Zeng, Scott Kopetz,[...]. J Natl Cancer Inst 2015
116
9

Molecularly targeted therapy based on tumour molecular profiling versus conventional therapy for advanced cancer (SHIVA): a multicentre, open-label, proof-of-concept, randomised, controlled phase 2 trial.
Christophe Le Tourneau, Jean-Pierre Delord, Anthony Gonçalves, Céline Gavoille, Coraline Dubot, Nicolas Isambert, Mario Campone, Olivier Trédan, Marie-Ange Massiani, Cécile Mauborgne,[...]. Lancet Oncol 2015
518
9

Sequencing depth and coverage: key considerations in genomic analyses.
David Sims, Ian Sudbery, Nicholas E Ilott, Andreas Heger, Chris P Ponting. Nat Rev Genet 2014
591
9


Standardized decision support in next generation sequencing reports of somatic cancer variants.
Rodrigo Dienstmann, Fei Dong, Darrell Borger, Dora Dias-Santagata, Leif W Ellisen, Long P Le, A John Iafrate. Mol Oncol 2014
54
9

Comprehensive Genomic Profiling of Carcinoma of Unknown Primary Site: New Routes to Targeted Therapies.
Jeffrey S Ross, Kai Wang, Laurie Gay, Geoff A Otto, Emily White, Kiel Iwanik, Gary Palmer, Roman Yelensky, Doron M Lipson, Juliann Chmielecki,[...]. JAMA Oncol 2015
108
9

Whole-Exome Sequencing of Metastatic Cancer and Biomarkers of Treatment Response.
Himisha Beltran, Kenneth Eng, Juan Miguel Mosquera, Alexandros Sigaras, Alessandro Romanel, Hanna Rennert, Myriam Kossai, Chantal Pauli, Bishoy Faltas, Jacqueline Fontugne,[...]. JAMA Oncol 2015
169
9

The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
9

Rare-disease genetics in the era of next-generation sequencing: discovery to translation.
Kym M Boycott, Megan R Vanstone, Dennis E Bulman, Alex E MacKenzie. Nat Rev Genet 2013
399
9

Guidelines for diagnostic next-generation sequencing.
Gert Matthijs, Erika Souche, Mariëlle Alders, Anniek Corveleyn, Sebastian Eck, Ilse Feenstra, Valérie Race, Erik Sistermans, Marc Sturm, Marjan Weiss,[...]. Eur J Hum Genet 2016
212
9

Good laboratory practice for clinical next-generation sequencing informatics pipelines.
Amy S Gargis, Lisa Kalman, David P Bick, Cristina da Silva, David P Dimmock, Birgit H Funke, Sivakumar Gowrisankar, Madhuri R Hegde, Shashikant Kulkarni, Christopher E Mason,[...]. Nat Biotechnol 2015
80
9

Targeted Next Generation Sequencing as a Reliable Diagnostic Assay for the Detection of Somatic Mutations in Tumours Using Minimal DNA Amounts from Formalin Fixed Paraffin Embedded Material.
Wendy W J de Leng, Christa G Gadellaa-van Hooijdonk, Françoise A S Barendregt-Smouter, Marco J Koudijs, Ies Nijman, John W J Hinrichs, Edwin Cuppen, Stef van Lieshout, Robert D Loberg, Maja de Jonge,[...]. PLoS One 2016
58
9

DNA sequencing with chain-terminating inhibitors.
F Sanger, S Nicklen, A R Coulson. Proc Natl Acad Sci U S A 1977
9

Guidelines for Validation of Next-Generation Sequencing-Based Oncology Panels: A Joint Consensus Recommendation of the Association for Molecular Pathology and College of American Pathologists.
Lawrence J Jennings, Maria E Arcila, Christopher Corless, Suzanne Kamel-Reid, Ira M Lubin, John Pfeifer, Robyn L Temple-Smolkin, Karl V Voelkerding, Marina N Nikiforova. J Mol Diagn 2017
210
9

KRAS mutation testing for predicting response to anti-EGFR therapy for colorectal carcinoma: proposal for an European quality assurance program.
J H J M van Krieken, A Jung, T Kirchner, F Carneiro, R Seruca, F T Bosman, P Quirke, J F Fléjou, T Plato Hansen, G de Hertogh,[...]. Virchows Arch 2008
213
6

BRAF mutations in hairy-cell leukemia.
Enrico Tiacci, Vladimir Trifonov, Gianluca Schiavoni, Antony Holmes, Wolfgang Kern, Maria Paola Martelli, Alessandra Pucciarini, Barbara Bigerna, Roberta Pacini, Victoria A Wells,[...]. N Engl J Med 2011
618
6

Detection of circulating tumor DNA in early- and late-stage human malignancies.
Chetan Bettegowda, Mark Sausen, Rebecca J Leary, Isaac Kinde, Yuxuan Wang, Nishant Agrawal, Bjarne R Bartlett, Hao Wang, Brandon Luber, Rhoda M Alani,[...]. Sci Transl Med 2014
6

Improvement in the quality of molecular analysis of EGFR in non-small-cell lung cancer detected by three rounds of external quality assessment.
Zandra C Deans, Neil Bilbe, Brendan O'Sullivan, Lazarus P Lazarou, David Gonzalez de Castro, Suzanne Parry, Andrew Dodson, Philippe Taniere, Caroline Clark, Rachel Butler. J Clin Pathol 2013
28
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.