A citation-based method for searching scientific literature

Nicolas Renier, Zhuhao Wu, David J Simon, Jing Yang, Pablo Ariel, Marc Tessier-Lavigne. Cell 2014
Times Cited: 610







List of co-cited articles
504 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Structural and molecular interrogation of intact biological systems.
Kwanghun Chung, Jenelle Wallace, Sung-Yon Kim, Sandhiya Kalyanasundaram, Aaron S Andalman, Thomas J Davidson, Julie J Mirzabekov, Kelly A Zalocusky, Joanna Mattis, Aleksandra K Denisin,[...]. Nature 2013
44

Three-dimensional imaging of solvent-cleared organs using 3DISCO.
Ali Ertürk, Klaus Becker, Nina Jährling, Christoph P Mauch, Caroline D Hojer, Jackson G Egen, Farida Hellal, Frank Bradke, Morgan Sheng, Hans-Ulrich Dodt. Nat Protoc 2012
495
32

Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.
Hans-Ulrich Dodt, Ulrich Leischner, Anja Schierloh, Nina Jährling, Christoph Peter Mauch, Katrin Deininger, Jan Michael Deussing, Matthias Eder, Walter Zieglgänsberger, Klaus Becker. Nat Methods 2007
666
31

Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis.
Etsuo A Susaki, Kazuki Tainaka, Dimitri Perrin, Fumiaki Kishino, Takehiro Tawara, Tomonobu M Watanabe, Chihiro Yokoyama, Hirotaka Onoe, Megumi Eguchi, Shun Yamaguchi,[...]. Cell 2014
611
29

Single-cell phenotyping within transparent intact tissue through whole-body clearing.
Bin Yang, Jennifer B Treweek, Rajan P Kulkarni, Benjamin E Deverman, Chun-Kan Chen, Eric Lubeck, Sheel Shah, Long Cai, Viviana Gradinaru. Cell 2014
506
28

Shrinkage-mediated imaging of entire organs and organisms using uDISCO.
Chenchen Pan, Ruiyao Cai, Francesca Paola Quacquarelli, Alireza Ghasemigharagoz, Athanasios Lourbopoulos, Paweł Matryba, Nikolaus Plesnila, Martin Dichgans, Farida Hellal, Ali Ertürk. Nat Methods 2016
251
28

Clarifying Tissue Clearing.
Douglas S Richardson, Jeff W Lichtman. Cell 2015
520
27

Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes.
Nicolas Renier, Eliza L Adams, Christoph Kirst, Zhuhao Wu, Ricardo Azevedo, Johannes Kohl, Anita E Autry, Lolahon Kadiri, Kannan Umadevi Venkataraju, Yu Zhou,[...]. Cell 2016
275
26


Advanced CLARITY for rapid and high-resolution imaging of intact tissues.
Raju Tomer, Li Ye, Brian Hsueh, Karl Deisseroth. Nat Protoc 2014
443
23

Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain.
Hiroshi Hama, Hiroshi Kurokawa, Hiroyuki Kawano, Ryoko Ando, Tomomi Shimogori, Hisayori Noda, Kiyoko Fukami, Asako Sakaue-Sawano, Atsushi Miyawaki. Nat Neurosci 2011
705
23

ClearT: a detergent- and solvent-free clearing method for neuronal and non-neuronal tissue.
Takaaki Kuwajima, Austen A Sitko, Punita Bhansali, Chris Jurgens, William Guido, Carol Mason. Development 2013
270
20

Tissue clearing and its applications in neuroscience.
Hiroki R Ueda, Ali Ertürk, Kwanghun Chung, Viviana Gradinaru, Alain Chédotal, Pavel Tomancak, Philipp J Keller. Nat Rev Neurosci 2020
88
22

ScaleS: an optical clearing palette for biological imaging.
Hiroshi Hama, Hiroyuki Hioki, Kana Namiki, Tetsushi Hoshida, Hiroshi Kurokawa, Fumiyoshi Ishidate, Takeshi Kaneko, Takumi Akagi, Takashi Saito, Takaomi Saido,[...]. Nat Neurosci 2015
280
19

Simple, Scalable Proteomic Imaging for High-Dimensional Profiling of Intact Systems.
Evan Murray, Jae Hun Cho, Daniel Goodwin, Taeyun Ku, Justin Swaney, Sung-Yon Kim, Heejin Choi, Young-Gyun Park, Jeong-Yoon Park, Austin Hubbert,[...]. Cell 2015
192
19

Tissue clearing of both hard and soft tissue organs with the PEGASOS method.
Dian Jing, Shiwen Zhang, Wenjing Luo, Xiaofei Gao, Yi Men, Chi Ma, Xiaohua Liu, Yating Yi, Abhijit Bugde, Bo O Zhou,[...]. Cell Res 2018
98
18

Chemical Landscape for Tissue Clearing Based on Hydrophilic Reagents.
Kazuki Tainaka, Tatsuya C Murakami, Etsuo A Susaki, Chika Shimizu, Rie Saito, Kei Takahashi, Akiko Hayashi-Takagi, Hiroshi Sekiya, Yasunobu Arima, Satoshi Nojima,[...]. Cell Rep 2018
77
23

Whole-body imaging with single-cell resolution by tissue decolorization.
Kazuki Tainaka, Shimpei I Kubota, Takeru Q Suyama, Etsuo A Susaki, Dimitri Perrin, Maki Ukai-Tadenuma, Hideki Ukai, Hiroki R Ueda. Cell 2014
241
18

Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging.
Etsuo A Susaki, Kazuki Tainaka, Dimitri Perrin, Hiroko Yukinaga, Akihiro Kuno, Hiroki R Ueda. Nat Protoc 2015
274
18

Protection of tissue physicochemical properties using polyfunctional crosslinkers.
Young-Gyun Park, Chang Ho Sohn, Ritchie Chen, Margaret McCue, Dae Hee Yun, Gabrielle T Drummond, Taeyun Ku, Nicholas B Evans, Hayeon Caitlyn Oak, Wendy Trieu,[...]. Nat Biotechnol 2018
64
26

Fully Automated Evaluation of Total Glomerular Number and Capillary Tuft Size in Nephritic Kidneys Using Lightsheet Microscopy.
Anika Klingberg, Anja Hasenberg, Isis Ludwig-Portugall, Anna Medyukhina, Linda Männ, Alexandra Brenzel, Daniel R Engel, Marc Thilo Figge, Christian Kurts, Matthias Gunzer. J Am Soc Nephrol 2017
132
17

A three-dimensional single-cell-resolution whole-brain atlas using CUBIC-X expansion microscopy and tissue clearing.
Tatsuya C Murakami, Tomoyuki Mano, Shu Saikawa, Shuhei A Horiguchi, Daichi Shigeta, Kousuke Baba, Hiroshi Sekiya, Yoshihiro Shimizu, Kenji F Tanaka, Hiroshi Kiyonari,[...]. Nat Neurosci 2018
96
16

Whole-Body Profiling of Cancer Metastasis with Single-Cell Resolution.
Shimpei I Kubota, Kei Takahashi, Jun Nishida, Yasuyuki Morishita, Shogo Ehata, Kazuki Tainaka, Kohei Miyazono, Hiroki R Ueda. Cell Rep 2017
109
16

Cellular and Molecular Probing of Intact Human Organs.
Shan Zhao, Mihail Ivilinov Todorov, Ruiyao Cai, Rami Ai -Maskari, Hanno Steinke, Elisabeth Kemter, Hongcheng Mai, Zhouyi Rong, Martin Warmer, Karen Stanic,[...]. Cell 2020
52
30

FDISCO: Advanced solvent-based clearing method for imaging whole organs.
Yisong Qi, Tingting Yu, Jianyi Xu, Peng Wan, Yilin Ma, Jingtan Zhu, Yusha Li, Hui Gong, Qingming Luo, Dan Zhu. Sci Adv 2019
58
25

Deep Learning Reveals Cancer Metastasis and Therapeutic Antibody Targeting in the Entire Body.
Chenchen Pan, Oliver Schoppe, Arnaldo Parra-Damas, Ruiyao Cai, Mihail Ivilinov Todorov, Gabor Gondi, Bettina von Neubeck, Nuray Böğürcü-Seidel, Sascha Seidel, Katia Sleiman,[...]. Cell 2019
52
28

Tridimensional Visualization and Analysis of Early Human Development.
Morgane Belle, David Godefroy, Gérard Couly, Samuel A Malone, Francis Collier, Paolo Giacobini, Alain Chédotal. Cell 2017
117
14

Panoptic imaging of transparent mice reveals whole-body neuronal projections and skull-meninges connections.
Ruiyao Cai, Chenchen Pan, Alireza Ghasemigharagoz, Mihail Ivilinov Todorov, Benjamin Förstera, Shan Zhao, Harsharan S Bhatia, Arnaldo Parra-Damas, Leander Mrowka, Delphine Theodorou,[...]. Nat Neurosci 2019
101
14

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
13

Scalable and DiI-compatible optical clearance of the mammalian brain.
Bing Hou, Dan Zhang, Shan Zhao, Mengping Wei, Zaifu Yang, Shaoxia Wang, Jiarui Wang, Xin Zhang, Bing Liu, Lingzhong Fan,[...]. Front Neuroanat 2015
100
13

Stochastic electrotransport selectively enhances the transport of highly electromobile molecules.
Sung-Yon Kim, Jae Hun Cho, Evan Murray, Naveed Bakh, Heejin Choi, Kimberly Ohn, Luzdary Ruelas, Austin Hubbert, Meg McCue, Sara L Vassallo,[...]. Proc Natl Acad Sci U S A 2015
92
14

Three-Dimensional Study of Alzheimer's Disease Hallmarks Using the iDISCO Clearing Method.
Thomas Liebmann, Nicolas Renier, Karima Bettayeb, Paul Greengard, Marc Tessier-Lavigne, Marc Flajolet. Cell Rep 2016
79
16

Machine learning analysis of whole mouse brain vasculature.
Mihail Ivilinov Todorov, Johannes Christian Paetzold, Oliver Schoppe, Giles Tetteh, Suprosanna Shit, Velizar Efremov, Katalin Todorov-Völgyi, Marco Düring, Martin Dichgans, Marie Piraud,[...]. Nat Methods 2020
45
28

Versatile whole-organ/body staining and imaging based on electrolyte-gel properties of biological tissues.
Etsuo A Susaki, Chika Shimizu, Akihiro Kuno, Kazuki Tainaka, Xiang Li, Kengo Nishi, Ken Morishima, Hiroaki Ono, Koji L Ode, Yuki Saeki,[...]. Nat Commun 2020
28
42

Advanced CUBIC tissue clearing for whole-organ cell profiling.
Katsuhiko Matsumoto, Tomoki T Mitani, Shuhei A Horiguchi, Junichi Kaneshiro, Tatsuya C Murakami, Tomoyuki Mano, Hiroshi Fujishima, Ayumu Konno, Tomonobu M Watanabe, Hirokazu Hirai,[...]. Nat Protoc 2019
26
42

Chemical Principles in Tissue Clearing and Staining Protocols for Whole-Body Cell Profiling.
Kazuki Tainaka, Akihiro Kuno, Shimpei I Kubota, Tatzya Murakami, Hiroki R Ueda. Annu Rev Cell Dev Biol 2016
127
11


Multiplex, quantitative cellular analysis in large tissue volumes with clearing-enhanced 3D microscopy (Ce3D).
Weizhe Li, Ronald N Germain, Michael Y Gerner. Proc Natl Acad Sci U S A 2017
124
11

Super-Resolution Mapping of Neuronal Circuitry With an Index-Optimized Clearing Agent.
Meng-Tsen Ke, Yasuhiro Nakai, Satoshi Fujimoto, Rie Takayama, Shuhei Yoshida, Tomoya S Kitajima, Makoto Sato, Takeshi Imai. Cell Rep 2016
125
11

ACT-PRESTO: Rapid and consistent tissue clearing and labeling method for 3-dimensional (3D) imaging.
Eunsoo Lee, Jungyoon Choi, Youhwa Jo, Joo Yeon Kim, Yu Jin Jang, Hye Myeong Lee, So Yeun Kim, Ho-Jae Lee, Keunchang Cho, Neoncheol Jung,[...]. Sci Rep 2016
114
11

Fluorescent-protein stabilization and high-resolution imaging of cleared, intact mouse brains.
Martin K Schwarz, Annemarie Scherbarth, Rolf Sprengel, Johann Engelhardt, Patrick Theer, Guenter Giese. PLoS One 2015
98
11

Whole-Brain Profiling of Cells and Circuits in Mammals by Tissue Clearing and Light-Sheet Microscopy.
Hiroki R Ueda, Hans-Ulrich Dodt, Pavel Osten, Michael N Economo, Jayaram Chandrashekar, Philipp J Keller. Neuron 2020
29
37

Chemical clearing and dehydration of GFP expressing mouse brains.
Klaus Becker, Nina Jährling, Saiedeh Saghafi, Reto Weiler, Hans-Ulrich Dodt. PLoS One 2012
169
11

Bone CLARITY: Clearing, imaging, and computational analysis of osteoprogenitors within intact bone marrow.
Alon Greenbaum, Ken Y Chan, Tatyana Dobreva, David Brown, Deepak H Balani, Rogely Boyce, Henry M Kronenberg, Helen J McBride, Viviana Gradinaru. Sci Transl Med 2017
91
10

Three-dimensional imaging of the unsectioned adult spinal cord to assess axon regeneration and glial responses after injury.
Ali Ertürk, Christoph P Mauch, Farida Hellal, Friedrich Förstner, Tara Keck, Klaus Becker, Nina Jährling, Heinz Steffens, Melanie Richter, Mark Hübener,[...]. Nat Med 2011
207
10

Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping.
Jennifer B Treweek, Ken Y Chan, Nicholas C Flytzanis, Bin Yang, Benjamin E Deverman, Alon Greenbaum, Antti Lignell, Cheng Xiao, Long Cai, Mark S Ladinsky,[...]. Nat Protoc 2015
141
10

Optical sectioning deep inside live embryos by selective plane illumination microscopy.
Jan Huisken, Jim Swoger, Filippo Del Bene, Joachim Wittbrodt, Ernst H K Stelzer. Science 2004
10

Mapping the Fine-Scale Organization and Plasticity of the Brain Vasculature.
Christoph Kirst, Sophie Skriabine, Alba Vieites-Prado, Thomas Topilko, Paul Bertin, Gaspard Gerschenfeld, Florine Verny, Piotr Topilko, Nicolas Michalski, Marc Tessier-Lavigne,[...]. Cell 2020
41
24

High-dimensional cell-level analysis of tissues with Ce3D multiplex volume imaging.
Weizhe Li, Ronald N Germain, Michael Y Gerner. Nat Protoc 2019
30
30

High-resolution imaging of fluorescent whole mouse brains using stabilised organic media (sDISCO).
Christian Hahn, Klaus Becker, Saiedeh Saghafi, Marko Pende, Alma Avdibašić, Massih Foroughipour, Daniel E Heinz, Carsten T Wotjak, Hans-Ulrich Dodt. J Biophotonics 2019
24
37


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.