A citation-based method for searching scientific literature

Deepti Gurdasani, Tommy Carstensen, Fasil Tekola-Ayele, Luca Pagani, Ioanna Tachmazidou, Konstantinos Hatzikotoulas, Savita Karthikeyan, Louise Iles, Martin O Pollard, Ananyo Choudhury, Graham R S Ritchie, Yali Xue, Jennifer Asimit, Rebecca N Nsubuga, Elizabeth H Young, Cristina Pomilla, Katja Kivinen, Kirk Rockett, Anatoli Kamali, Ayo P Doumatey, Gershim Asiki, Janet Seeley, Fatoumatta Sisay-Joof, Muminatou Jallow, Stephen Tollman, Ephrem Mekonnen, Rosemary Ekong, Tamiru Oljira, Neil Bradman, Kalifa Bojang, Michele Ramsay, Adebowale Adeyemo, Endashaw Bekele, Ayesha Motala, Shane A Norris, Fraser Pirie, Pontiano Kaleebu, Dominic Kwiatkowski, Chris Tyler-Smith, Charles Rotimi, Eleftheria Zeggini, Manjinder S Sandhu. Nature 2015
Times Cited: 314







List of co-cited articles
630 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
40

The genetic structure and history of Africans and African Americans.
Sarah A Tishkoff, Floyd A Reed, Françoise R Friedlaender, Christopher Ehret, Alessia Ranciaro, Alain Froment, Jibril B Hirbo, Agnes A Awomoyi, Jean-Marie Bodo, Ogobara Doumbo,[...]. Science 2009
858
21

Fast model-based estimation of ancestry in unrelated individuals.
David H Alexander, John Novembre, Kenneth Lange. Genome Res 2009
19

Genomics is failing on diversity.
Alice B Popejoy, Stephanie M Fullerton. Nature 2016
758
18

Second-generation PLINK: rising to the challenge of larger and richer datasets.
Christopher C Chang, Carson C Chow, Laurent Cam Tellier, Shashaank Vattikuti, Shaun M Purcell, James J Lee. Gigascience 2015
17

PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
17

High-depth African genomes inform human migration and health.
Ananyo Choudhury, Shaun Aron, Laura R Botigué, Dhriti Sengupta, Gerrit Botha, Taoufik Bensellak, Gordon Wells, Judit Kumuthini, Daniel Shriner, Yasmina J Fakim,[...]. Nature 2020
99
17

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.
Swapan Mallick, Heng Li, Mark Lipson, Iain Mathieson, Melissa Gymrek, Fernando Racimo, Mengyao Zhao, Niru Chennagiri, Susanne Nordenfelt, Arti Tandon,[...]. Nature 2016
640
14

Whole-genome sequencing for an enhanced understanding of genetic variation among South Africans.
Ananyo Choudhury, Michèle Ramsay, Scott Hazelhurst, Shaun Aron, Soraya Bardien, Gerrit Botha, Emile R Chimusa, Alan Christoffels, Junaid Gamieldien, Mahjoubeh J Sefid-Dashti,[...]. Nat Commun 2017
55
23

Research capacity. Enabling the genomic revolution in Africa.
Charles Rotimi, Akin Abayomi, Alash'le Abimiku, Victoria May Adabayeri, Clement Adebamowo, Ezekiel Adebiyi, Adebowale D Ademola, Adebowale Adeyemo, Dwomoa Adu, Dissou Affolabi,[...]. Science 2014
249
12

Assembly of a pan-genome from deep sequencing of 910 humans of African descent.
Rachel M Sherman, Juliet Forman, Valentin Antonescu, Daniela Puiu, Michelle Daya, Nicholas Rafaels, Meher Preethi Boorgula, Sameer Chavan, Candelaria Vergara, Victor E Ortega,[...]. Nat Genet 2019
158
12

Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.
Deepti Gurdasani, Tommy Carstensen, Segun Fatumo, Guanjie Chen, Chris S Franklin, Javier Prado-Martinez, Heleen Bouman, Federico Abascal, Marc Haber, Ioanna Tachmazidou,[...]. Cell 2019
77
15

The mutational constraint spectrum quantified from variation in 141,456 humans.
Konrad J Karczewski, Laurent C Francioli, Grace Tiao, Beryl B Cummings, Jessica Alföldi, Qingbo Wang, Ryan L Collins, Kristen M Laricchia, Andrea Ganna, Daniel P Birnbaum,[...]. Nature 2020
12

Population structure and eigenanalysis.
Nick Patterson, Alkes L Price, David Reich. PLoS Genet 2006
11

Southern African ancient genomes estimate modern human divergence to 350,000 to 260,000 years ago.
Carina M Schlebusch, Helena Malmström, Torsten Günther, Per Sjödin, Alexandra Coutinho, Hanna Edlund, Arielle R Munters, Mário Vicente, Maryna Steyn, Himla Soodyall,[...]. Science 2017
143
11

Admixture into and within sub-Saharan Africa.
George Bj Busby, Gavin Band, Quang Si Le, Muminatou Jallow, Edith Bougama, Valentina D Mangano, Lucas N Amenga-Etego, Anthony Enimil, Tobias Apinjoh, Carolyne M Ndila,[...]. Elife 2016
70
15

H3Africa: current perspectives.
Nicola Mulder, Alash'le Abimiku, Sally N Adebamowo, Jantina de Vries, Alice Matimba, Paul Olowoyo, Michele Ramsay, Michelle Skelton, Dan J Stein. Pharmgenomics Pers Med 2018
59
18

The Missing Diversity in Human Genetic Studies.
Giorgio Sirugo, Scott M Williams, Sarah A Tishkoff. Cell 2019
392
11

Robust relationship inference in genome-wide association studies.
Ani Manichaikul, Josyf C Mychaleckyj, Stephen S Rich, Kathy Daly, Michèle Sale, Wei-Min Chen. Bioinformatics 2010
10

dbSNP: the NCBI database of genetic variation.
S T Sherry, M H Ward, M Kholodov, J Baker, L Phan, E M Smigielski, K Sirotkin. Nucleic Acids Res 2001
10

African evolutionary history inferred from whole genome sequence data of 44 indigenous African populations.
Shaohua Fan, Derek E Kelly, Marcia H Beltrame, Matthew E B Hansen, Swapan Mallick, Alessia Ranciaro, Jibril Hirbo, Simon Thompson, William Beggs, Thomas Nyambo,[...]. Genome Biol 2019
49
20

The Ensembl Variant Effect Predictor.
William McLaren, Laurent Gil, Sarah E Hunt, Harpreet Singh Riat, Graham R S Ritchie, Anja Thormann, Paul Flicek, Fiona Cunningham. Genome Biol 2016
10

The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
10

Insights into human genetic variation and population history from 929 diverse genomes.
Anders Bergström, Shane A McCarthy, Ruoyun Hui, Mohamed A Almarri, Qasim Ayub, Petr Danecek, Yuan Chen, Sabine Felkel, Pille Hallast, Jack Kamm,[...]. Science 2020
203
10

Ancient west Eurasian ancestry in southern and eastern Africa.
Joseph K Pickrell, Nick Patterson, Po-Ru Loh, Mark Lipson, Bonnie Berger, Mark Stoneking, Brigitte Pakendorf, David Reich. Proc Natl Acad Sci U S A 2014
154
10

Clinical use of current polygenic risk scores may exacerbate health disparities.
Alicia R Martin, Masahiro Kanai, Yoichiro Kamatani, Yukinori Okada, Benjamin M Neale, Mark J Daly. Nat Genet 2019
784
10

Reconstructing Prehistoric African Population Structure.
Pontus Skoglund, Jessica C Thompson, Mary E Prendergast, Alissa Mittnik, Kendra Sirak, Mateja Hajdinjak, Tasneem Salie, Nadin Rohland, Swapan Mallick, Alexander Peltzer,[...]. Cell 2017
142
9

Dispersals and genetic adaptation of Bantu-speaking populations in Africa and North America.
Etienne Patin, Marie Lopez, Rebecca Grollemund, Paul Verdu, Christine Harmant, Hélène Quach, Guillaume Laval, George H Perry, Luis B Barreiro, Alain Froment,[...]. Science 2017
114
9

Genomic variation in seven Khoe-San groups reveals adaptation and complex African history.
Carina M Schlebusch, Pontus Skoglund, Per Sjödin, Lucie M Gattepaille, Dena Hernandez, Flora Jay, Sen Li, Michael De Jongh, Andrew Singleton, Michael G B Blum,[...]. Science 2012
199
9

The UK10K project identifies rare variants in health and disease.
Klaudia Walter, Josine L Min, Jie Huang, Lucy Crooks, Yasin Memari, Shane McCarthy, John R B Perry, ChangJiang Xu, Marta Futema, Daniel Lawson,[...]. Nature 2015
633
9



Evaluating the promise of inclusion of African ancestry populations in genomics.
Amy R Bentley, Shawneequa L Callier, Charles N Rotimi. NPJ Genom Med 2020
49
18

The genetic prehistory of southern Africa.
Joseph K Pickrell, Nick Patterson, Chiara Barbieri, Falko Berthold, Linda Gerlach, Tom Güldemann, Blesswell Kure, Sununguko Wata Mpoloka, Hirosi Nakagawa, Christfried Naumann,[...]. Nat Commun 2012
133
8

A genetic atlas of human admixture history.
Garrett Hellenthal, George B J Busby, Gavin Band, James F Wilson, Cristian Capelli, Daniel Falush, Simon Myers. Science 2014
404
8

A map of human genome variation from population-scale sequencing.
Gonçalo R Abecasis, David Altshuler, Adam Auton, Lisa D Brooks, Richard M Durbin, Richard A Gibbs, Matt E Hurles, Gil A McVean. Nature 2010
8

Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals.
Masao Nagasaki, Jun Yasuda, Fumiki Katsuoka, Naoki Nariai, Kaname Kojima, Yosuke Kawai, Yumi Yamaguchi-Kabata, Junji Yokozawa, Inaho Danjoh, Sakae Saito,[...]. Nat Commun 2015
272
8

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data.
Kai Wang, Mingyao Li, Hakon Hakonarson. Nucleic Acids Res 2010
8

An integrated map of genetic variation from 1,092 human genomes.
Goncalo R Abecasis, Adam Auton, Lisa D Brooks, Mark A DePristo, Richard M Durbin, Robert E Handsaker, Hyun Min Kang, Gabor T Marth, Gil A McVean. Nature 2012
8

Analysis of polygenic risk score usage and performance in diverse human populations.
L Duncan, H Shen, B Gelaye, J Meijsen, K Ressler, M Feldman, R Peterson, B Domingue. Nat Commun 2019
350
8

The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019.
Annalisa Buniello, Jacqueline A L MacArthur, Maria Cerezo, Laura W Harris, James Hayhurst, Cinzia Malangone, Aoife McMahon, Joannella Morales, Edward Mountjoy, Elliot Sollis,[...]. Nucleic Acids Res 2019
8

Inference of population structure using dense haplotype data.
Daniel John Lawson, Garrett Hellenthal, Simon Myers, Daniel Falush. PLoS Genet 2012
573
7

A genomic portrait of haplotype diversity and signatures of selection in indigenous southern African populations.
Emile R Chimusa, Ayton Meintjies, Milaine Tchanga, Nicola Mulder, Cathal Seoighe, Himla Soodyall, Rajkumar Ramesar. PLoS Genet 2015
36
19

Fine-Scale Human Population Structure in Southern Africa Reflects Ecogeographic Boundaries.
Caitlin Uren, Minju Kim, Alicia R Martin, Dean Bobo, Christopher R Gignoux, Paul D van Helden, Marlo Möller, Eileen G Hoal, Brenna M Henn. Genetics 2016
53
13

RFMix: a discriminative modeling approach for rapid and robust local-ancestry inference.
Brian K Maples, Simon Gravel, Eimear E Kenny, Carlos D Bustamante. Am J Hum Genet 2013
373
7

Genetic analyses of diverse populations improves discovery for complex traits.
Genevieve L Wojcik, Mariaelisa Graff, Katherine K Nishimura, Ran Tao, Jeffrey Haessler, Christopher R Gignoux, Heather M Highland, Yesha M Patel, Elena P Sorokin, Christy L Avery,[...]. Nature 2019
333
7

Khoe-San Genomes Reveal Unique Variation and Confirm the Deepest Population Divergence in Homo sapiens.
Carina M Schlebusch, Per Sjödin, Gwenna Breton, Torsten Günther, Thijessen Naidoo, Nina Hollfelder, Agnes E Sjöstrand, Jingzi Xu, Lucie M Gattepaille, Mário Vicente,[...]. Mol Biol Evol 2020
21
33

Human Demographic History Impacts Genetic Risk Prediction across Diverse Populations.
Alicia R Martin, Christopher R Gignoux, Raymond K Walters, Genevieve L Wojcik, Benjamin M Neale, Simon Gravel, Mark J Daly, Carlos D Bustamante, Eimear E Kenny. Am J Hum Genet 2017
580
7

The variant call format and VCFtools.
Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A Albers, Eric Banks, Mark A DePristo, Robert E Handsaker, Gerton Lunter, Gabor T Marth, Stephen T Sherry,[...]. Bioinformatics 2011
7

A reference panel of 64,976 haplotypes for genotype imputation.
Shane McCarthy, Sayantan Das, Warren Kretzschmar, Olivier Delaneau, Andrew R Wood, Alexander Teumer, Hyun Min Kang, Christian Fuchsberger, Petr Danecek, Kevin Sharp,[...]. Nat Genet 2016
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.