A citation-based method for searching scientific literature

Keyao Pan, Do-Nyun Kim, Fei Zhang, Matthew R Adendorff, Hao Yan, Mark Bathe. Nat Commun 2014
Times Cited: 75







List of co-cited articles
721 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Folding DNA into twisted and curved nanoscale shapes.
Hendrik Dietz, Shawn M Douglas, William M Shih. Science 2009
729
60

Quantitative prediction of 3D solution shape and flexibility of nucleic acid nanostructures.
Do-Nyun Kim, Fabian Kilchherr, Hendrik Dietz, Mark Bathe. Nucleic Acids Res 2012
205
60

Rapid prototyping of 3D DNA-origami shapes with caDNAno.
Shawn M Douglas, Adam H Marblestone, Surat Teerapittayanon, Alejandro Vazquez, George M Church, William M Shih. Nucleic Acids Res 2009
585
60

A primer to scaffolded DNA origami.
Carlos Ernesto Castro, Fabian Kilchherr, Do-Nyun Kim, Enrique Lin Shiao, Tobias Wauer, Philipp Wortmann, Mark Bathe, Hendrik Dietz. Nat Methods 2011
490
58

Self-assembly of DNA into nanoscale three-dimensional shapes.
Shawn M Douglas, Hendrik Dietz, Tim Liedl, Björn Högberg, Franziska Graf, William M Shih. Nature 2009
53

DNA rendering of polyhedral meshes at the nanoscale.
Erik Benson, Abdulmelik Mohammed, Johan Gardell, Sergej Masich, Eugen Czeizler, Pekka Orponen, Björn Högberg. Nature 2015
321
48

DNA origami with complex curvatures in three-dimensional space.
Dongran Han, Suchetan Pal, Jeanette Nangreave, Zhengtao Deng, Yan Liu, Hao Yan. Science 2011
627
46

A logic-gated nanorobot for targeted transport of molecular payloads.
Shawn M Douglas, Ido Bachelet, George M Church. Science 2012
44

Nucleic acid junctions and lattices.
N C Seeman. J Theor Biol 1982
42

Designer nanoscale DNA assemblies programmed from the top down.
Rémi Veneziano, Sakul Ratanalert, Kaiming Zhang, Fei Zhang, Hao Yan, Wah Chiu, Mark Bathe. Science 2016
281
40

Self-assembly of a nanoscale DNA box with a controllable lid.
Ebbe S Andersen, Mingdong Dong, Morten M Nielsen, Kasper Jahn, Ramesh Subramani, Wael Mamdouh, Monika M Golas, Bjoern Sander, Holger Stark, Cristiano L P Oliveira,[...]. Nature 2009
883
34

Complex wireframe DNA origami nanostructures with multi-arm junction vertices.
Fei Zhang, Shuoxing Jiang, Siyu Wu, Yulin Li, Chengde Mao, Yan Liu, Hao Yan. Nat Nanotechnol 2015
206
34

Three-dimensional structures self-assembled from DNA bricks.
Yonggang Ke, Luvena L Ong, William M Shih, Peng Yin. Science 2012
638
33

Complex shapes self-assembled from single-stranded DNA tiles.
Bryan Wei, Mingjie Dai, Peng Yin. Nature 2012
525
32

Cryo-EM structure of a 3D DNA-origami object.
Xiao-Chen Bai, Thomas G Martin, Sjors H W Scheres, Hendrik Dietz. Proc Natl Acad Sci U S A 2012
153
30


DNA-based self-assembly of chiral plasmonic nanostructures with tailored optical response.
Anton Kuzyk, Robert Schreiber, Zhiyuan Fan, Günther Pardatscher, Eva-Maria Roller, Alexander Högele, Friedrich C Simmel, Alexander O Govorov, Tim Liedl. Nature 2012
28

Casting inorganic structures with DNA molds.
Wei Sun, Etienne Boulais, Yera Hakobyan, Wei Li Wang, Amy Guan, Mark Bathe, Peng Yin. Science 2014
159
28

Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra.
Yu He, Tao Ye, Min Su, Chuan Zhang, Alexander E Ribbe, Wen Jiang, Chengde Mao. Nature 2008
700
26

DNA gridiron nanostructures based on four-arm junctions.
Dongran Han, Suchetan Pal, Yang Yang, Shuoxing Jiang, Jeanette Nangreave, Yan Liu, Hao Yan. Science 2013
148
25

DNA origami delivery system for cancer therapy with tunable release properties.
Yong-Xing Zhao, Alan Shaw, Xianghui Zeng, Erik Benson, Andreas M Nyström, Björn Högberg. ACS Nano 2012
289
24

Programmable motion of DNA origami mechanisms.
Alexander E Marras, Lifeng Zhou, Hai-Jun Su, Carlos E Castro. Proc Natl Acad Sci U S A 2015
179
24

DNA in a material world.
Nadrian C Seeman. Nature 2003
22

Rapid folding of DNA into nanoscale shapes at constant temperature.
Jean-Philippe J Sobczak, Thomas G Martin, Thomas Gerling, Hendrik Dietz. Science 2012
172
22

Design and self-assembly of two-dimensional DNA crystals.
E Winfree, F Liu, L A Wenzler, N C Seeman. Nature 1998
22

DNA origami as a carrier for circumvention of drug resistance.
Qiao Jiang, Chen Song, Jeanette Nangreave, Xiaowei Liu, Lin Lin, Dengli Qiu, Zhen-Gang Wang, Guozhang Zou, Xingjie Liang, Hao Yan,[...]. J Am Chem Soc 2012
410
21

Self-assembly of three-dimensional prestressed tensegrity structures from DNA.
Tim Liedl, Björn Högberg, Jessica Tytell, Donald E Ingber, William M Shih. Nat Nanotechnol 2010
214
21

Multilayer DNA origami packed on a square lattice.
Yonggang Ke, Shawn M Douglas, Minghui Liu, Jaswinder Sharma, Anchi Cheng, Albert Leung, Yan Liu, William M Shih, Hao Yan. J Am Chem Soc 2009
242
21

Challenges and opportunities for structural DNA nanotechnology.
Andre V Pinheiro, Dongran Han, William M Shih, Hao Yan. Nat Nanotechnol 2011
736
21

Introducing improved structural properties and salt dependence into a coarse-grained model of DNA.
Benedict E K Snodin, Ferdinando Randisi, Majid Mosayebi, Petr Šulc, John S Schreck, Flavio Romano, Thomas E Ouldridge, Roman Tsukanov, Eyal Nir, Ard A Louis,[...]. J Chem Phys 2015
145
21

De novo reconstruction of DNA origami structures through atomistic molecular dynamics simulation.
Christopher Maffeo, Jejoong Yoo, Aleksei Aksimentiev. Nucleic Acids Res 2016
43
37

Synthetic lipid membrane channels formed by designed DNA nanostructures.
Martin Langecker, Vera Arnaut, Thomas G Martin, Jonathan List, Stephan Renner, Michael Mayer, Hendrik Dietz, Friedrich C Simmel. Science 2012
445
20

DNA-templated self-assembly of protein arrays and highly conductive nanowires.
Hao Yan, Sung Ha Park, Gleb Finkelstein, John H Reif, Thomas H LaBean. Science 2003
920
20

The enabled state of DNA nanotechnology.
Veikko Linko, Hendrik Dietz. Curr Opin Biotechnol 2013
117
20

Nanomaterials. Programmable materials and the nature of the DNA bond.
Matthew R Jones, Nadrian C Seeman, Chad A Mirkin. Science 2015
727
20


From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal.
Jianping Zheng, Jens J Birktoft, Yi Chen, Tong Wang, Ruojie Sha, Pamela E Constantinou, Stephan L Ginell, Chengde Mao, Nadrian C Seeman. Nature 2009
504
18


Dynamic DNA devices and assemblies formed by shape-complementary, non-base pairing 3D components.
Thomas Gerling, Klaus F Wagenbauer, Andrea M Neuner, Hendrik Dietz. Science 2015
328
18

Magnesium-free self-assembly of multi-layer DNA objects.
Thomas G Martin, Hendrik Dietz. Nat Commun 2012
89
18

A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron.
William M Shih, Joel D Quispe, Gerald F Joyce. Nature 2004
547
17

Computing Nonequilibrium Conformational Dynamics of Structured Nucleic Acid Assemblies.
Reza Sharifi Sedeh, Keyao Pan, Matthew Ralph Adendorff, Oskar Hallatschek, Klaus-Jürgen Bathe, Mark Bathe. J Chem Theory Comput 2016
13
100

Coarse-graining DNA for simulations of DNA nanotechnology.
Jonathan P K Doye, Thomas E Ouldridge, Ard A Louis, Flavio Romano, Petr Šulc, Christian Matek, Benedict E K Snodin, Lorenzo Rovigatti, John S Schreck, Ryan M Harrison,[...]. Phys Chem Chem Phys 2013
106
16

Scalable molecular dynamics with NAMD.
James C Phillips, Rosemary Braun, Wei Wang, James Gumbart, Emad Tajkhorshid, Elizabeth Villa, Christophe Chipot, Robert D Skeel, Laxmikant Kalé, Klaus Schulten. J Comput Chem 2005
16

Guiding the folding pathway of DNA origami.
Katherine E Dunn, Frits Dannenberg, Thomas E Ouldridge, Marta Kwiatkowska, Andrew J Turberfield, Jonathan Bath. Nature 2015
90
16

Polyhedra self-assembled from DNA tripods and characterized with 3D DNA-PAINT.
Ryosuke Iinuma, Yonggang Ke, Ralf Jungmann, Thomas Schlichthaerle, Johannes B Woehrstein, Peng Yin. Science 2014
189
16

DNA origami nanopores.
Nicholas A W Bell, Christian R Engst, Marc Ablay, Giorgio Divitini, Caterina Ducati, Tim Liedl, Ulrich F Keyser. Nano Lett 2012
192
14

Direct mechanical measurements reveal the material properties of three-dimensional DNA origami.
Dominik J Kauert, Thomas Kurth, Tim Liedl, Ralf Seidel. Nano Lett 2011
123
14

Rigid DNA beams for high-resolution single-molecule mechanics.
Emanuel Pfitzner, Christian Wachauf, Fabian Kilchherr, Benjamin Pelz, William M Shih, Matthias Rief, Hendrik Dietz. Angew Chem Int Ed Engl 2013
67
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.