A citation-based method for searching scientific literature

Sarah H Stubbs, Nicholas K Conrad. Nucleic Acids Res 2015
Times Cited: 20







List of co-cited articles
245 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


TREX is a conserved complex coupling transcription with messenger RNA export.
Katja Strässer, Seiji Masuda, Paul Mason, Jens Pfannstiel, Marisa Oppizzi, Susana Rodriguez-Navarro, Ana G Rondón, Andres Aguilera, Kevin Struhl, Robin Reed,[...]. Nature 2002
634
40

UIF, a New mRNA export adaptor that works together with REF/ALY, requires FACT for recruitment to mRNA.
Guillaume M Hautbergue, Ming-Lung Hung, Matthew J Walsh, Ambrosius P L Snijders, Chung-Te Chang, Rachel Jones, Chris P Ponting, Mark J Dickman, Stuart A Wilson. Curr Biol 2009
104
40

Adaptor Aly and co-adaptor Thoc5 function in the Tap-p15-mediated nuclear export of HSP70 mRNA.
Jun Katahira, Hitomi Inoue, Ed Hurt, Yoshihiro Yoneda. EMBO J 2009
104
35

Human mRNA export machinery recruited to the 5' end of mRNA.
Hong Cheng, Kobina Dufu, Chung-Sheng Lee, Jeanne L Hsu, Anusha Dias, Robin Reed. Cell 2006
329
30

Recruitment of the human TREX complex to mRNA during splicing.
Seiji Masuda, Rita Das, Hong Cheng, Ed Hurt, Nijsje Dorman, Robin Reed. Genes Dev 2005
314
30

A role for TREX components in the release of spliced mRNA from nuclear speckle domains.
Anusha P Dias, Kobina Dufu, Haixin Lei, Robin Reed. Nat Commun 2010
125
30

TREX exposes the RNA-binding domain of Nxf1 to enable mRNA export.
Nicolas Viphakone, Guillaume M Hautbergue, Matthew Walsh, Chung-Te Chang, Arthur Holland, Eric G Folco, Robin Reed, Stuart A Wilson. Nat Commun 2012
117
30

Mutually exclusive interactions drive handover of mRNA from export adaptors to TAP.
Guillaume M Hautbergue, Ming-Lung Hung, Alexander P Golovanov, Lu-Yun Lian, Stuart A Wilson. Proc Natl Acad Sci U S A 2008
128
30

ALYREF mainly binds to the 5' and the 3' regions of the mRNA in vivo.
Min Shi, Heng Zhang, Xudong Wu, Zhisong He, Lantian Wang, Shanye Yin, Bin Tian, Guohui Li, Hong Cheng. Nucleic Acids Res 2017
57
30

Evidence that a consensus element found in naturally intronless mRNAs promotes mRNA export.
Haixin Lei, Bo Zhai, Shanye Yin, Steve Gygi, Robin Reed. Nucleic Acids Res 2013
64
25

Chtop is a component of the dynamic TREX mRNA export complex.
Chung-Te Chang, Guillaume M Hautbergue, Matthew J Walsh, Nicolas Viphakone, Thamar B van Dijk, Sjaak Philipsen, Stuart A Wilson. EMBO J 2013
69
25

Aly and THO are required for assembly of the human TREX complex and association of TREX components with the spliced mRNA.
Binkai Chi, Qingliang Wang, Guifen Wu, Ming Tan, Lantian Wang, Min Shi, Xingya Chang, Hong Cheng. Nucleic Acids Res 2013
87
25

The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus.
Guramrit Singh, Alper Kucukural, Can Cenik, John D Leszyk, Scott A Shaffer, Zhiping Weng, Melissa J Moore. Cell 2012
226
25

SR splicing factors serve as adapter proteins for TAP-dependent mRNA export.
Yingqun Huang, Renata Gattoni, James Stévenin, Joan A Steitz. Mol Cell 2003
350
25

A short conserved motif in ALYREF directs cap- and EJC-dependent assembly of export complexes on spliced mRNAs.
Agnieszka M Gromadzka, Anna-Lena Steckelberg, Kusum K Singh, Kay Hofmann, Niels H Gehring. Nucleic Acids Res 2016
47
25

GGGGCC repeat expansion in C9orf72 compromises nucleocytoplasmic transport.
Brian D Freibaum, Yubing Lu, Rodrigo Lopez-Gonzalez, Nam Chul Kim, Sandra Almeida, Kyung-Ha Lee, Nisha Badders, Marc Valentine, Bruce L Miller, Philip C Wong,[...]. Nature 2015
517
25


Genome instability and transcription elongation impairment in human cells depleted of THO/TREX.
María S Domínguez-Sánchez, Sonia Barroso, Belén Gómez-González, Rosa Luna, Andrés Aguilera. PLoS Genet 2011
153
20

The Spt6 SH2 domain binds Ser2-P RNAPII to direct Iws1-dependent mRNA splicing and export.
Sunnie M Yoh, Helen Cho, Loni Pickle, Ronald M Evans, Katherine A Jones. Genes Dev 2007
184
20

Recruitment of TREX to the transcription machinery by its direct binding to the phospho-CTD of RNA polymerase II.
Dominik M Meinel, Cornelia Burkert-Kautzsch, Anja Kieser, Eoghan O'Duibhir, Matthias Siebert, Andreas Mayer, Patrick Cramer, Johannes Söding, Frank C P Holstege, Katja Sträßer. PLoS Genet 2013
43
20

Cotranscriptional recruitment of the serine-arginine-rich (SR)-like proteins Gbp2 and Hrb1 to nascent mRNA via the TREX complex.
Ed Hurt, Ming-Juan Luo, Susanne Röther, Robin Reed, Katja Strässer. Proc Natl Acad Sci U S A 2004
101
20

Mex67p, a novel factor for nuclear mRNA export, binds to both poly(A)+ RNA and nuclear pores.
A Segref, K Sharma, V Doye, A Hellwig, J Huber, R Lührmann, E Hurt. EMBO J 1997
429
20




Transcriptome maps of mRNP biogenesis factors define pre-mRNA recognition.
Carlo Baejen, Phillipp Torkler, Saskia Gressel, Katharina Essig, Johannes Söding, Patrick Cramer. Mol Cell 2014
73
20

ALY as a potential contributor to metastasis in human oral squamous cell carcinoma.
Yasuhiro Saito, Atsushi Kasamatsu, Ayumi Yamamoto, Toshihiro Shimizu, Hidetaka Yokoe, Yosuke Sakamoto, Katsunori Ogawara, Masashi Shiiba, Hideki Tanzawa, Katsuhiro Uzawa. J Cancer Res Clin Oncol 2013
36
20

Pre-mRNA splicing and mRNA export linked by direct interactions between UAP56 and Aly.
M L Luo, Z Zhou, K Magni, C Christoforides, J Rappsilber, M Mann, R Reed. Nature 2001
301
20

Human inositol polyphosphate multikinase regulates transcript-selective nuclear mRNA export to preserve genome integrity.
Vihandha O Wickramasinghe, Jane M Savill, Sreenivas Chavali, Asta B Jonsdottir, Eeson Rajendra, Tamara Grüner, Ronald A Laskey, M Madan Babu, Ashok R Venkitaraman. Mol Cell 2013
59
20

The protein Aly links pre-messenger-RNA splicing to nuclear export in metazoans.
Z Zhou, M J Luo, K Straesser, J Katahira, E Hurt, R Reed. Nature 2000
397
20

Differential expression of THOC1 and ALY mRNP biogenesis/export factors in human cancers.
María S Domínguez-Sánchez, Carmen Sáez, Miguel A Japón, Andrés Aguilera, Rosa Luna. BMC Cancer 2011
55
20

Selective nuclear export of specific classes of mRNA from mammalian nuclei is promoted by GANP.
Vihandha O Wickramasinghe, Robert Andrews, Peter Ellis, Cordelia Langford, John B Gurdon, Murray Stewart, Ashok R Venkitaraman, Ronald A Laskey. Nucleic Acids Res 2014
46
20

Exporting RNA from the nucleus to the cytoplasm.
Alwin Köhler, Ed Hurt. Nat Rev Mol Cell Biol 2007
516
20

Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention.
Karen Yap, Zhao Qin Lim, Piyush Khandelia, Brad Friedman, Eugene V Makeyev. Genes Dev 2012
179
20

Detained introns are a novel, widespread class of post-transcriptionally spliced introns.
Paul L Boutz, Arjun Bhutkar, Phillip A Sharp. Genes Dev 2015
227
20



Control of mammalian gene expression by selective mRNA export.
Vihandha O Wickramasinghe, Ronald A Laskey. Nat Rev Mol Cell Biol 2015
124
20


Luzp4 defines a new mRNA export pathway in cancer cells.
Nicolas Viphakone, Marcus G Cumberbatch, Michaela J Livingstone, Paul R Heath, Mark J Dickman, James W Catto, Stuart A Wilson. Nucleic Acids Res 2015
37
20


Viral factors reveal a role for REF/Aly in nuclear RNA stability.
Sarah H Stubbs, Olga V Hunter, Ashley Hoover, Nicholas K Conrad. Mol Cell Biol 2012
33
20

Ultrashort and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution.
Lukas Windhager, Thomas Bonfert, Kaspar Burger, Zsolt Ruzsics, Stefan Krebs, Stefanie Kaufmann, Georg Malterer, Anne L'Hernault, Markus Schilhabel, Stefan Schreiber,[...]. Genome Res 2012
97
20

High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay.
Lars Dölken, Zsolt Ruzsics, Bernd Rädle, Caroline C Friedel, Ralf Zimmer, Jörg Mages, Reinhard Hoffmann, Paul Dickinson, Thorsten Forster, Peter Ghazal,[...]. RNA 2008
280
20

Canonical Poly(A) Polymerase Activity Promotes the Decay of a Wide Variety of Mammalian Nuclear RNAs.
Stefan M Bresson, Olga V Hunter, Allyson C Hunter, Nicholas K Conrad. PLoS Genet 2015
62
20


The role of TREX in gene expression and disease.
Catherine G Heath, Nicolas Viphakone, Stuart A Wilson. Biochem J 2016
97
20


A protein complex containing Tho2, Hpr1, Mft1 and a novel protein, Thp2, connects transcription elongation with mitotic recombination in Saccharomyces cerevisiae.
S Chávez, T Beilharz, A G Rondón, H Erdjument-Bromage, P Tempst, J Q Svejstrup, T Lithgow, A Aguilera. EMBO J 2000
235
15

Ubiquitin-associated domain of Mex67 synchronizes recruitment of the mRNA export machinery with transcription.
Carole Gwizdek, Nahid Iglesias, Manuel S Rodriguez, Batool Ossareh-Nazari, Maria Hobeika, Gilles Divita, Françoise Stutz, Catherine Dargemont. Proc Natl Acad Sci U S A 2006
104
15


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.