A citation-based method for searching scientific literature

Simone Gupta, Shannon E Ellis, Foram N Ashar, Anna Moes, Joel S Bader, Jianan Zhan, Andrew B West, Dan E Arking. Nat Commun 2014
Times Cited: 245







List of co-cited articles
1207 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Transcriptomic analysis of autistic brain reveals convergent molecular pathology.
Irina Voineagu, Xinchen Wang, Patrick Johnston, Jennifer K Lowe, Yuan Tian, Steve Horvath, Jonathan Mill, Rita M Cantor, Benjamin J Blencowe, Daniel H Geschwind. Nature 2011
65

Genome-wide changes in lncRNA, splicing, and regional gene expression patterns in autism.
Neelroop N Parikshak, Vivek Swarup, T Grant Belgard, Manuel Irimia, Gokul Ramaswami, Michael J Gandal, Christopher Hartl, Virpi Leppa, Luis de la Torre Ubieta, Jerry Huang,[...]. Nature 2016
255
35

Synaptic, transcriptional and chromatin genes disrupted in autism.
Silvia De Rubeis, Xin He, Arthur P Goldberg, Christopher S Poultney, Kaitlin Samocha, A Erucment Cicek, Yan Kou, Li Liu, Menachem Fromer, Susan Walker,[...]. Nature 2014
27

The contribution of de novo coding mutations to autism spectrum disorder.
Ivan Iossifov, Brian J O'Roak, Stephan J Sanders, Michael Ronemus, Niklas Krumm, Dan Levy, Holly A Stessman, Kali T Witherspoon, Laura Vives, Karynne E Patterson,[...]. Nature 2014
22

Integrative functional genomic analyses implicate specific molecular pathways and circuits in autism.
Neelroop N Parikshak, Rui Luo, Alice Zhang, Hyejung Won, Jennifer K Lowe, Vijayendran Chandran, Steve Horvath, Daniel H Geschwind. Cell 2013
542
21

Neuroglial activation and neuroinflammation in the brain of patients with autism.
Diana L Vargas, Caterina Nascimbene, Chitra Krishnan, Andrew W Zimmerman, Carlos A Pardo. Ann Neurol 2005
21

Shared molecular neuropathology across major psychiatric disorders parallels polygenic overlap.
Michael J Gandal, Jillian R Haney, Neelroop N Parikshak, Virpi Leppa, Gokul Ramaswami, Chris Hartl, Andrew J Schork, Vivek Appadurai, Alfonso Buil, Thomas M Werge,[...]. Science 2018
391
20

Most genetic risk for autism resides with common variation.
Trent Gaugler, Lambertus Klei, Stephan J Sanders, Corneliu A Bodea, Arthur P Goldberg, Ann B Lee, Milind Mahajan, Dina Manaa, Yudi Pawitan, Jennifer Reichert,[...]. Nat Genet 2014
530
19

Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
Stephan J Sanders, Xin He, A Jeremy Willsey, A Gulhan Ercan-Sencicek, Kaitlin E Samocha, A Ercument Cicek, Michael T Murtha, Vanessa H Bal, Somer L Bishop, Shan Dong,[...]. Neuron 2015
592
18

WGCNA: an R package for weighted correlation network analysis.
Peter Langfelder, Steve Horvath. BMC Bioinformatics 2008
18

Microglial activation and increased microglial density observed in the dorsolateral prefrontal cortex in autism.
John T Morgan, Gursharan Chana, Carlos A Pardo, Cristian Achim, Katerina Semendeferi, Jody Buckwalter, Eric Courchesne, Ian P Everall. Biol Psychiatry 2010
376
17

Advancing the understanding of autism disease mechanisms through genetics.
Luis de la Torre-Ubieta, Hyejung Won, Jason L Stein, Daniel H Geschwind. Nat Med 2016
339
17

De novo gene disruptions in children on the autistic spectrum.
Ivan Iossifov, Michael Ronemus, Dan Levy, Zihua Wang, Inessa Hakker, Julie Rosenbaum, Boris Yamrom, Yoon-Ha Lee, Giuseppe Narzisi, Anthony Leotta,[...]. Neuron 2012
894
16

Microglial activation in young adults with autism spectrum disorder.
Katsuaki Suzuki, Genichi Sugihara, Yasuomi Ouchi, Kazuhiko Nakamura, Masami Futatsubashi, Kiyokazu Takebayashi, Yujiro Yoshihara, Kei Omata, Kaori Matsumoto, Kenji J Tsuchiya,[...]. JAMA Psychiatry 2013
246
16

Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder.
Michael J Gandal, Pan Zhang, Evi Hadjimichael, Rebecca L Walker, Chao Chen, Shuang Liu, Hyejung Won, Harm van Bakel, Merina Varghese, Yongjun Wang,[...]. Science 2018
281
15

Prevalence of Autism Spectrum Disorder Among Children Aged 8 Years - Autism and Developmental Disabilities Monitoring Network, 11 Sites, United States, 2014.
Jon Baio, Lisa Wiggins, Deborah L Christensen, Matthew J Maenner, Julie Daniels, Zachary Warren, Margaret Kurzius-Spencer, Walter Zahorodny, Cordelia Robinson Rosenberg, Tiffany White,[...]. MMWR Surveill Summ 2018
14

SFARI Gene 2.0: a community-driven knowledgebase for the autism spectrum disorders (ASDs).
Brett S Abrahams, Dan E Arking, Daniel B Campbell, Heather C Mefford, Eric M Morrow, Lauren A Weiss, Idan Menashe, Tim Wadkins, Sharmila Banerjee-Basu, Alan Packer. Mol Autism 2013
243
14

Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism.
A Jeremy Willsey, Stephan J Sanders, Mingfeng Li, Shan Dong, Andrew T Tebbenkamp, Rebecca A Muhle, Steven K Reilly, Leon Lin, Sofia Fertuzinhos, Jeremy A Miller,[...]. Cell 2013
470
14

Identification of common genetic risk variants for autism spectrum disorder.
Jakob Grove, Stephan Ripke, Thomas D Als, Manuel Mattheisen, Raymond K Walters, Hyejung Won, Jonatan Pallesen, Esben Agerbo, Ole A Andreassen, Richard Anney,[...]. Nat Genet 2019
423
14


Patterns and rates of exonic de novo mutations in autism spectrum disorders.
Benjamin M Neale, Yan Kou, Li Liu, Avi Ma'ayan, Kaitlin E Samocha, Aniko Sabo, Chiao-Feng Lin, Christine Stevens, Li-San Wang, Vladimir Makarov,[...]. Nature 2012
13

De novo mutations revealed by whole-exome sequencing are strongly associated with autism.
Stephan J Sanders, Michael T Murtha, Abha R Gupta, John D Murdoch, Melanie J Raubeson, A Jeremy Willsey, A Gulhan Ercan-Sencicek, Nicholas M DiLullo, Neelroop N Parikshak, Jason L Stein,[...]. Nature 2012
13

Elevated immune response in the brain of autistic patients.
Xiaohong Li, Abha Chauhan, Ashfaq M Sheikh, Sangita Patil, Ved Chauhan, Xiu-Min Li, Lina Ji, Ted Brown, Mazhar Malik. J Neuroimmunol 2009
407
13

Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.
Brian J O'Roak, Laura Vives, Santhosh Girirajan, Emre Karakoc, Niklas Krumm, Bradley P Coe, Roie Levy, Arthur Ko, Choli Lee, Joshua D Smith,[...]. Nature 2012
12

Synaptic pruning by microglia is necessary for normal brain development.
Rosa C Paolicelli, Giulia Bolasco, Francesca Pagani, Laura Maggi, Maria Scianni, Patrizia Panzanelli, Maurizio Giustetto, Tiago Alves Ferreira, Eva Guiducci, Laura Dumas,[...]. Science 2011
11

Immune transcriptome alterations in the temporal cortex of subjects with autism.
Krassimira Garbett, Philip J Ebert, Amanda Mitchell, Carla Lintas, Barbara Manzi, Károly Mirnics, Antonio M Persico. Neurobiol Dis 2008
246
11

Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism.
F Kyle Satterstrom, Jack A Kosmicki, Jiebiao Wang, Michael S Breen, Silvia De Rubeis, Joon-Yong An, Minshi Peng, Ryan Collins, Jakob Grove, Lambertus Klei,[...]. Cell 2020
297
11


Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder.
Ryan K C Yuen, Daniele Merico, Matt Bookman, Jennifer L Howe, Bhooma Thiruvahindrapuram, Rohan V Patel, Joe Whitney, Nicole Deflaux, Jonathan Bingham, Zhuozhi Wang,[...]. Nat Neurosci 2017
328
10

The familial risk of autism.
Sven Sandin, Paul Lichtenstein, Ralf Kuja-Halkola, Henrik Larsson, Christina M Hultman, Abraham Reichenberg. JAMA 2014
476
10

Fate mapping analysis reveals that adult microglia derive from primitive macrophages.
Florent Ginhoux, Melanie Greter, Marylene Leboeuf, Sayan Nandi, Peter See, Solen Gokhan, Mark F Mehler, Simon J Conway, Lai Guan Ng, E Richard Stanley,[...]. Science 2010
10

Microglia sculpt postnatal neural circuits in an activity and complement-dependent manner.
Dorothy P Schafer, Emily K Lehrman, Amanda G Kautzman, Ryuta Koyama, Alan R Mardinly, Ryo Yamasaki, Richard M Ransohoff, Michael E Greenberg, Ben A Barres, Beth Stevens. Neuron 2012
10

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
10

Autism.
Meng-Chuan Lai, Michael V Lombardo, Simon Baron-Cohen. Lancet 2014
877
10

Microglia in the cerebral cortex in autism.
Nicole A Tetreault, Atiya Y Hakeem, Sue Jiang, Brian A Williams, Elizabeth Allman, Barbara J Wold, John M Allman. J Autism Dev Disord 2012
133
10

Abnormal microglial-neuronal spatial organization in the dorsolateral prefrontal cortex in autism.
John T Morgan, Gursharan Chana, Ian Abramson, Katerina Semendeferi, Eric Courchesne, Ian P Everall. Brain Res 2012
111
10

Maternal immune activation: Implications for neuropsychiatric disorders.
Myka L Estes, A Kimberley McAllister. Science 2016
385
10

Immune mediators in the brain and peripheral tissues in autism spectrum disorder.
Myka L Estes, A Kimberley McAllister. Nat Rev Neurosci 2015
230
10

Genetic heritability and shared environmental factors among twin pairs with autism.
Joachim Hallmayer, Sue Cleveland, Andrea Torres, Jennifer Phillips, Brianne Cohen, Tiffany Torigoe, Janet Miller, Angie Fedele, Jack Collins, Karen Smith,[...]. Arch Gen Psychiatry 2011
962
10

Deficient neuron-microglia signaling results in impaired functional brain connectivity and social behavior.
Yang Zhan, Rosa C Paolicelli, Francesco Sforazzini, Laetitia Weinhard, Giulia Bolasco, Francesca Pagani, Alexei L Vyssotski, Angelo Bifone, Alessandro Gozzi, Davide Ragozzino,[...]. Nat Neurosci 2014
553
9

FOXG1-Dependent Dysregulation of GABA/Glutamate Neuron Differentiation in Autism Spectrum Disorders.
Jessica Mariani, Gianfilippo Coppola, Ping Zhang, Alexej Abyzov, Lauren Provini, Livia Tomasini, Mariangela Amenduni, Anna Szekely, Dean Palejev, Michael Wilson,[...]. Cell 2015
494
9

Gene expression in human brain implicates sexually dimorphic pathways in autism spectrum disorders.
Donna M Werling, Neelroop N Parikshak, Daniel H Geschwind. Nat Commun 2016
105
9

Atopic diseases and inflammation of the brain in the pathogenesis of autism spectrum disorders.
T C Theoharides, I Tsilioni, A B Patel, R Doyle. Transl Psychiatry 2016
79
11

IL-6 is increased in the cerebellum of autistic brain and alters neural cell adhesion, migration and synaptic formation.
Hongen Wei, Hua Zou, Ashfaq M Sheikh, Mazhar Malik, Carl Dobkin, W Ted Brown, Xiaohong Li. J Neuroinflammation 2011
157
9

Single-cell genomics identifies cell type-specific molecular changes in autism.
Dmitry Velmeshev, Lucas Schirmer, Diane Jung, Maximilian Haeussler, Yonatan Perez, Simone Mayer, Aparna Bhaduri, Nitasha Goyal, David H Rowitch, Arnold R Kriegstein. Science 2019
130
9

Age-dependent brain gene expression and copy number anomalies in autism suggest distinct pathological processes at young versus mature ages.
Maggie L Chow, Tiziano Pramparo, Mary E Winn, Cynthia Carter Barnes, Hai-Ri Li, Lauren Weiss, Jian-Bing Fan, Sarah Murray, Craig April, Haim Belinson,[...]. PLoS Genet 2012
119
8

Maternal infection requiring hospitalization during pregnancy and autism spectrum disorders.
Hjördis O Atladóttir, Poul Thorsen, Lars Østergaard, Diana E Schendel, Sanne Lemcke, Morsi Abdallah, Erik T Parner. J Autism Dev Disord 2010
462
8

Elevated plasma cytokines in autism spectrum disorders provide evidence of immune dysfunction and are associated with impaired behavioral outcome.
Paul Ashwood, Paula Krakowiak, Irva Hertz-Picciotto, Robin Hansen, Isaac Pessah, Judy Van de Water. Brain Behav Immun 2011
419
8

Blood transcriptomic comparison of individuals with and without autism spectrum disorder: A combined-samples mega-analysis.
Daniel S Tylee, Jonathan L Hess, Thomas P Quinn, Rahul Barve, Hailiang Huang, Yanli Zhang-James, Jeffrey Chang, Boryana S Stamova, Frank R Sharp, Irva Hertz-Picciotto,[...]. Am J Med Genet B Neuropsychiatr Genet 2017
25
32

FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism.
Jennifer C Darnell, Sarah J Van Driesche, Chaolin Zhang, Ka Ying Sharon Hung, Aldo Mele, Claire E Fraser, Elizabeth F Stone, Cynthia Chen, John J Fak, Sung Wook Chi,[...]. Cell 2011
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.