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Conformational transition of a hairpin structure to G-quadruplex within the WNT1 gene promoter.
Margaret Hsin-Jui Kuo, Zi-Fu Wang, Ting-Yuan Tseng, Ming-Hao Li, Shang-Te Danny Hsu, Jing-Jer Lin, Ta-Chau Chang. J Am Chem Soc 2015
Times Cited: 36






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List of co-cited articles
459 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.
Adam Siddiqui-Jain, Cory L Grand, David J Bearss, Laurence H Hurley. Proc Natl Acad Sci U S A 2002
1583
15
41

Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?
Shankar Balasubramanian, Laurence H Hurley, Stephen Neidle. Nat Rev Drug Discov 2011
1104
13
36

An RNA hairpin to G-quadruplex conformational transition.
Anthony Bugaut, Pierre Murat, Shankar Balasubramanian. J Am Chem Soc 2012
64
12
33

How long is too long? Effects of loop size on G-quadruplex stability.
Aurore Guédin, Julien Gros, Patrizia Alberti, Jean-Louis Mergny. Nucleic Acids Res 2010
276
12
33

High-throughput sequencing of DNA G-quadruplex structures in the human genome.
Vicki S Chambers, Giovanni Marsico, Jonathan M Boutell, Marco Di Antonio, Geoffrey P Smith, Shankar Balasubramanian. Nat Biotechnol 2015
633
11
30

Quantitative visualization of DNA G-quadruplex structures in human cells.
Giulia Biffi, David Tannahill, John McCafferty, Shankar Balasubramanian. Nat Chem 2013
1258
10
27

Prevalence of quadruplexes in the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2005
1182
10
27

Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells.
Giulia Biffi, Marco Di Antonio, David Tannahill, Shankar Balasubramanian. Nat Chem 2014
377
10
27

G-quadruplexes and their regulatory roles in biology.
Daniela Rhodes, Hans J Lipps. Nucleic Acids Res 2015
819
10
27

DNA secondary structures: stability and function of G-quadruplex structures.
Matthew L Bochman, Katrin Paeschke, Virginia A Zakian. Nat Rev Genet 2012
836
9
25

Folding and unfolding pathways of the human telomeric G-quadruplex.
Robert D Gray, John O Trent, Jonathan B Chaires. J Mol Biol 2014
124
9
25

5'-UTR RNA G-quadruplexes: translation regulation and targeting.
Anthony Bugaut, Shankar Balasubramanian. Nucleic Acids Res 2012
424
8
22

Quadruplex DNA: sequence, topology and structure.
Sarah Burge, Gary N Parkinson, Pascale Hazel, Alan K Todd, Stephen Neidle. Nucleic Acids Res 2006
1546
8
22

Crystal structure of parallel quadruplexes from human telomeric DNA.
Gary N Parkinson, Michael P H Lee, Stephen Neidle. Nature 2002
1466
8
22

The kinetics and folding pathways of intramolecular G-quadruplex nucleic acids.
Amy Y Q Zhang, Shankar Balasubramanian. J Am Chem Soc 2012
102
8
22

G-quadruplexes in promoters throughout the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2007
879
8
22

c-MYC promoter G-quadruplex formed at the 5'-end of NHE III1 element: insights into biological relevance and parallel-stranded G-quadruplex stability.
Raveendra I Mathad, Emmanuel Hatzakis, Jixun Dai, Danzhou Yang. Nucleic Acids Res 2011
146
8
22

G-quadruplex structures mark human regulatory chromatin.
Robert Hänsel-Hertsch, Dario Beraldi, Stefanie V Lensing, Giovanni Marsico, Katherine Zyner, Aled Parry, Marco Di Antonio, Jeremy Pike, Hiroshi Kimura, Masashi Narita,[...]. Nat Genet 2016
427
8
22

A New G-Quadruplex with Hairpin Loop Immediately Upstream of the Human BCL2 P1 Promoter Modulates Transcription.
Buket Onel, Megan Carver, Guanhui Wu, Daria Timonina, Salil Kalarn, Marti Larriva, Danzhou Yang. J Am Chem Soc 2016
73
8
22

DNA G-quadruplexes in the human genome: detection, functions and therapeutic potential.
Robert Hänsel-Hertsch, Marco Di Antonio, Shankar Balasubramanian. Nat Rev Mol Cell Biol 2017
454
8
22

Detection of G-quadruplex DNA in mammalian cells.
Alexander Henderson, Yuliang Wu, Yu Chuan Huang, Elizabeth A Chavez, Jesse Platt, F Brad Johnson, Robert M Brosh, Dipankar Sen, Peter M Lansdorp. Nucleic Acids Res 2014
312
7
19

Mfold web server for nucleic acid folding and hybridization prediction.
Michael Zuker. Nucleic Acids Res 2003
9064
7
19

An RNA G-quadruplex in the 5' UTR of the NRAS proto-oncogene modulates translation.
Sunita Kumari, Anthony Bugaut, Julian L Huppert, Shankar Balasubramanian. Nat Chem Biol 2007
539
7
19

Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution.
Attila Ambrus, Ding Chen, Jixun Dai, Tiffanie Bialis, Roger A Jones, Danzhou Yang. Nucleic Acids Res 2006
815
7
19

Involvement of Long-Lived Intermediate States in the Complex Folding Pathway of the Human Telomeric G-Quadruplex.
Irene Bessi, Hendrik R A Jonker, Christian Richter, Harald Schwalbe. Angew Chem Int Ed Engl 2015
62
7
19

A G-rich sequence within the c-kit oncogene promoter forms a parallel G-quadruplex having asymmetric G-tetrad dynamics.
Shang-Te Danny Hsu, Peter Varnai, Anthony Bugaut, Anthony P Reszka, Stephen Neidle, Shankar Balasubramanian. J Am Chem Soc 2009
154
7
19

Folding pathways of human telomeric type-1 and type-2 G-quadruplex structures.
Tomoko Mashimo, Hirotaka Yagi, Yuta Sannohe, Arivazhagan Rajendran, Hiroshi Sugiyama. J Am Chem Soc 2010
128
7
19

Human telomeric G-quadruplex: structures of DNA and RNA sequences.
Anh Tuân Phan. FEBS J 2010
359
7
19

Stability and kinetics of G-quadruplex structures.
Andrew N Lane, J Brad Chaires, Robert D Gray, John O Trent. Nucleic Acids Res 2008
498
7
19

A Role for the Fifth G-Track in G-Quadruplex Forming Oncogene Promoter Sequences during Oxidative Stress: Do These "Spare Tires" Have an Evolved Function?
Aaron M Fleming, Jia Zhou, Susan S Wallace, Cynthia J Burrows. ACS Cent Sci 2015
93
7
19

Kinetics and mechanism of K+- and Na+-induced folding of models of human telomeric DNA into G-quadruplex structures.
Robert D Gray, Jonathan B Chaires. Nucleic Acids Res 2008
145
7
19

Bulges in G-quadruplexes: broadening the definition of G-quadruplex-forming sequences.
Vineeth Thachappilly Mukundan, Anh Tuân Phan. J Am Chem Soc 2013
185
7
19

Coexistence of two distinct G-quadruplex conformations in the hTERT promoter.
Kah Wai Lim, Laurent Lacroix, Doris Jia En Yue, Joefina Kim Cheow Lim, Jocelyn Mei Wen Lim, Anh Tuân Phan. J Am Chem Soc 2010
112
7
19

C9orf72 nucleotide repeat structures initiate molecular cascades of disease.
Aaron R Haeusler, Christopher J Donnelly, Goran Periz, Eric A J Simko, Patrick G Shaw, Min-Sik Kim, Nicholas J Maragakis, Juan C Troncoso, Akhilesh Pandey, Rita Sattler,[...]. Nature 2014
601
6
16

A potassium ion-dependent RNA structural switch regulates human pre-miRNA 92b maturation.
Gayan Mirihana Arachchilage, Arosha C Dassanayake, Soumitra Basu. Chem Biol 2015
78
6
16

Structure of the human telomere in K+ solution: a stable basket-type G-quadruplex with only two G-tetrad layers.
Kah Wai Lim, Samir Amrane, Serge Bouaziz, Weixin Xu, Yuguang Mu, Dinshaw J Patel, Kim Ngoc Luu, Anh Tuân Phan. J Am Chem Soc 2009
341
6
16

Human telomere, oncogenic promoter and 5'-UTR G-quadruplexes: diverse higher order DNA and RNA targets for cancer therapeutics.
Dinshaw J Patel, Anh Tuân Phan, Vitaly Kuryavyi. Nucleic Acids Res 2007
667
6
16

NMR solution structure of the major G-quadruplex structure formed in the human BCL2 promoter region.
Jixun Dai, Ding Chen, Roger A Jones, Laurence H Hurley, Danzhou Yang. Nucleic Acids Res 2006
259
6
16

Highly prevalent putative quadruplex sequence motifs in human DNA.
Alan K Todd, Matthew Johnston, Stephen Neidle. Nucleic Acids Res 2005
705
6
16

Solution structure of the major G-quadruplex formed in the human VEGF promoter in K+: insights into loop interactions of the parallel G-quadruplexes.
Prashansa Agrawal, Emmanuel Hatzakis, Kexiao Guo, Megan Carver, Danzhou Yang. Nucleic Acids Res 2013
106
6
16

Folding of guanine quadruplex molecules-funnel-like mechanism or kinetic partitioning? An overview from MD simulation studies.
Jiří Šponer, Giovanni Bussi, Petr Stadlbauer, Petra Kührová, Pavel Banáš, Barira Islam, Shozeb Haider, Stephen Neidle, Michal Otyepka. Biochim Biophys Acta Gen Subj 2017
63
6
16

Folding and misfolding pathways of G-quadruplex DNA.
Adrien Marchand, Valérie Gabelica. Nucleic Acids Res 2016
94
6
16

G-Quadruplex Secondary Structure Obtained from Circular Dichroism Spectroscopy.
Rafael Del Villar-Guerra, John O Trent, Jonathan B Chaires. Angew Chem Int Ed Engl 2018
205
6
16

5'-UTR G-quadruplex structures acting as translational repressors.
Jean-Denis Beaudoin, Jean-Pierre Perreault. Nucleic Acids Res 2010
156
5
13

An unusually stable G-quadruplex within the 5'-UTR of the MT3 matrix metalloproteinase mRNA represses translation in eukaryotic cells.
Mark J Morris, Soumitra Basu. Biochemistry 2009
115
5
13

Monovalent cation-induced structure of telomeric DNA: the G-quartet model.
J R Williamson, M K Raghuraman, T R Cech. Cell 1989
979
5
13

G-quadruplex structures are stable and detectable in human genomic DNA.
Enid Yi Ni Lam, Dario Beraldi, David Tannahill, Shankar Balasubramanian. Nat Commun 2013
301
5
13

G quadruplexes are genomewide targets of transcriptional helicases XPB and XPD.
Lucas T Gray, Aarthy C Vallur, Johanna Eddy, Nancy Maizels. Nat Chem Biol 2014
145
5
13

Circular dichroism and conformational polymorphism of DNA.
Jaroslav Kypr, Iva Kejnovská, Daniel Renciuk, Michaela Vorlícková. Nucleic Acids Res 2009
992
5
13

Topological characterization of nucleic acid G-quadruplexes by UV absorption and circular dichroism.
Andreas Ioannis Karsisiotis, Nason Ma'ani Hessari, Ettore Novellino, Gian Piero Spada, Antonio Randazzo, Mateus Webba da Silva. Angew Chem Int Ed Engl 2011
268
5
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.

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