A citation-based method for searching scientific literature

Robert K McGinty, Song Tan. Chem Rev 2015
Times Cited: 209







List of co-cited articles
1281 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Crystal structure of the nucleosome core particle at 2.8 A resolution.
K Luger, A W Mäder, R K Richmond, D F Sargent, T J Richmond. Nature 1997
34


Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution.
Curt A Davey, David F Sargent, Karolin Luger, Armin W Maeder, Timothy J Richmond. J Mol Biol 2002
966
20

Nucleosome structure and dynamics are coming of age.
Keda Zhou, Guillaume Gaullier, Karolin Luger. Nat Struct Mol Biol 2019
93
18


The mechanics behind DNA sequence-dependent properties of the nucleosome.
Eugene Y D Chua, Dileep Vasudevan, Gabriela E Davey, Bin Wu, Curt A Davey. Nucleic Acids Res 2012
104
12

Translating the histone code.
T Jenuwein, C D Allis. Science 2001
11

Cryo-EM study of the chromatin fiber reveals a double helix twisted by tetranucleosomal units.
Feng Song, Ping Chen, Dapeng Sun, Mingzhu Wang, Liping Dong, Dan Liang, Rui-Ming Xu, Ping Zhu, Guohong Li. Science 2014
338
11

Rapid spontaneous accessibility of nucleosomal DNA.
Gu Li, Marcia Levitus, Carlos Bustamante, Jonathan Widom. Nat Struct Mol Biol 2005
444
11

The expanding landscape of 'oncohistone' mutations in human cancers.
Benjamin A Nacev, Lijuan Feng, John D Bagert, Agata E Lemiesz, JianJiong Gao, Alexey A Soshnev, Ritika Kundra, Nikolaus Schultz, Tom W Muir, C David Allis. Nature 2019
116
10

The role of the nucleosome acidic patch in modulating higher order chromatin structure.
Anna A Kalashnikova, Mary E Porter-Goff, Uma M Muthurajan, Karolin Luger, Jeffrey C Hansen. J R Soc Interface 2013
134
10

DNA damage detection in nucleosomes involves DNA register shifting.
Syota Matsumoto, Simone Cavadini, Richard D Bunker, Ralph S Grand, Alessandro Potenza, Julius Rabl, Junpei Yamamoto, Andreas D Schenk, Dirk Schübeler, Shigenori Iwai,[...]. Nature 2019
36
27

X-ray structure of a tetranucleosome and its implications for the chromatin fibre.
Thomas Schalch, Sylwia Duda, David F Sargent, Timothy J Richmond. Nature 2005
506
10

Reconstitution of nucleosome core particles from recombinant histones and DNA.
Pamela N Dyer, Raji S Edayathumangalam, Cindy L White, Yunhe Bao, Srinivas Chakravarthy, Uma M Muthurajan, Karolin Luger. Methods Enzymol 2004
491
10

Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1.
Jan Bednar, Isabel Garcia-Saez, Ramachandran Boopathi, Amber R Cutter, Gabor Papai, Anna Reymer, Sajad H Syed, Imtiaz Nisar Lone, Ognyan Tonchev, Corinne Crucifix,[...]. Mol Cell 2017
119
10

Regulation of chromatin by histone modifications.
Andrew J Bannister, Tony Kouzarides. Cell Res 2011
10

The nucleosomal surface as a docking station for Kaposi's sarcoma herpesvirus LANA.
Andrew J Barbera, Jayanth V Chodaparambil, Brenna Kelley-Clarke, Vladimir Joukov, Johannes C Walter, Karolin Luger, Kenneth M Kaye. Science 2006
361
9


Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions.
Alexey K Shaytan, Grigoriy A Armeev, Alexander Goncearenco, Victor B Zhurkin, David Landsman, Anna R Panchenko. J Mol Biol 2016
81
11


ISWI chromatin remodellers sense nucleosome modifications to determine substrate preference.
Geoffrey P Dann, Glen P Liszczak, John D Bagert, Manuel M Müller, Uyen T T Nguyen, Felix Wojcik, Zachary Z Brown, Jeffrey Bos, Tatyana Panchenko, Rasmus Pihl,[...]. Nature 2017
86
9

The biology of chromatin remodeling complexes.
Cedric R Clapier, Bradley R Cairns. Annu Rev Biochem 2009
8

ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells.
Horng D Ou, Sébastien Phan, Thomas J Deerinck, Andrea Thor, Mark H Ellisman, Clodagh C O'Shea. Science 2017
361
8

Spheroid chromatin units (v bodies).
A L Olins, D E Olins. Science 1974
8

The language of covalent histone modifications.
B D Strahl, C D Allis. Nature 2000
8

Near-atomic resolution structures of interdigitated nucleosome fibres.
Zenita Adhireksan, Deepti Sharma, Phoi Leng Lee, Curt A Davey. Nat Commun 2020
16
50


Regulation of nucleosome dynamics by histone modifications.
Gabriel E Zentner, Steven Henikoff. Nat Struct Mol Biol 2013
513
7

Histone H4-K16 acetylation controls chromatin structure and protein interactions.
Michael Shogren-Knaak, Haruhiko Ishii, Jian-Min Sun, Michael J Pazin, James R Davie, Craig L Peterson. Science 2006
7

The Chd1 chromatin remodeler shifts hexasomes unidirectionally.
Robert F Levendosky, Anton Sabantsev, Sebastian Deindl, Gregory D Bowman. Elife 2016
36
19

Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes.
Cedric R Clapier, Janet Iwasa, Bradley R Cairns, Craig L Peterson. Nat Rev Mol Cell Biol 2017
357
7

Structures of the ISWI-nucleosome complex reveal a conserved mechanism of chromatin remodeling.
Lijuan Yan, Hao Wu, Xuemei Li, Ning Gao, Zhucheng Chen. Nat Struct Mol Biol 2019
44
15

Cancer-associated mutations of histones H2B, H3.1 and H2A.Z.1 affect the structure and stability of the nucleosome.
Yasuhiro Arimura, Masae Ikura, Risa Fujita, Mamiko Noda, Wataru Kobayashi, Naoki Horikoshi, Jiying Sun, Lin Shi, Masayuki Kusakabe, Masahiko Harata,[...]. Nucleic Acids Res 2018
33
21


Asymmetric unwrapping of nucleosomes under tension directed by DNA local flexibility.
Thuy T M Ngo, Qiucen Zhang, Ruobo Zhou, Jaya G Yodh, Taekjip Ha. Cell 2015
154
7

Structure of an H1-Bound 6-Nucleosome Array Reveals an Untwisted Two-Start Chromatin Fiber Conformation.
Isabel Garcia-Saez, Hervé Menoni, Ramachandran Boopathi, Manu S Shukla, Lama Soueidan, Marjolaine Noirclerc-Savoye, Aline Le Roy, Dimitrios A Skoufias, Jan Bednar, Ali Hamiche,[...]. Mol Cell 2018
41
17

Determinants of nucleosome positioning.
Kevin Struhl, Eran Segal. Nat Struct Mol Biol 2013
361
7

New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?
Karolin Luger, Mekonnen L Dechassa, David J Tremethick. Nat Rev Mol Cell Biol 2012
388
7

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
7

Emerging roles of linker histones in regulating chromatin structure and function.
Dmitry V Fyodorov, Bing-Rui Zhou, Arthur I Skoultchi, Yawen Bai. Nat Rev Mol Cell Biol 2018
160
7

Mechanism of chromatin remodelling revealed by the Snf2-nucleosome structure.
Xiaoyu Liu, Meijing Li, Xian Xia, Xueming Li, Zhucheng Chen. Nature 2017
122
7

Nucleosome-Chd1 structure and implications for chromatin remodelling.
Lucas Farnung, Seychelle M Vos, Christoph Wigge, Patrick Cramer. Nature 2017
117
7

Histone exchange, chromatin structure and the regulation of transcription.
Swaminathan Venkatesh, Jerry L Workman. Nat Rev Mol Cell Biol 2015
488
7

The structure of DNA in the nucleosome core.
Timothy J Richmond, Curt A Davey. Nature 2003
775
7

Coot: model-building tools for molecular graphics.
Paul Emsley, Kevin Cowtan. Acta Crystallogr D Biol Crystallogr 2004
7

Atomic resolution cryo-EM structure of a native-like CENP-A nucleosome aided by an antibody fragment.
Bing-Rui Zhou, K N Sathish Yadav, Mario Borgnia, Jingjun Hong, Baohua Cao, Ada L Olins, Donald E Olins, Yawen Bai, Ping Zhang. Nat Commun 2019
31
22

Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma.
Jeremy Schwartzentruber, Andrey Korshunov, Xiao-Yang Liu, David T W Jones, Elke Pfaff, Karine Jacob, Dominik Sturm, Adam M Fontebasso, Dong-Anh Khuong Quang, Martje Tönjes,[...]. Nature 2012
7

Nucleosome-bound SOX2 and SOX11 structures elucidate pioneer factor function.
Svetlana O Dodonova, Fangjie Zhu, Christian Dienemann, Jussi Taipale, Patrick Cramer. Nature 2020
54
12

Structural diversity of the nucleosome.
Masako Koyama, Hitoshi Kurumizaka. J Biochem 2018
35
17



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.