A citation-based method for searching scientific literature

Alberto Ciccia, Jen-Wei Huang, Lior Izhar, Mathew E Sowa, J Wade Harper, Stephen J Elledge. Proc Natl Acad Sci U S A 2014
Times Cited: 69







List of co-cited articles
802 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The NBS1-Treacle complex controls ribosomal RNA transcription in response to DNA damage.
Dorthe H Larsen, Flurina Hari, Julie A Clapperton, Myriam Gwerder, Katrin Gutsche, Matthias Altmeyer, Stephanie Jungmichel, Luis I Toledo, Daniel Fink, Maj-Britt Rask,[...]. Nat Cell Biol 2014
87
69

The ATM repair pathway inhibits RNA polymerase I transcription in response to chromosome breaks.
Michael Kruhlak, Elizabeth E Crouch, Marika Orlov, Carolina Montaño, Stanislaw A Gorski, André Nussenzweig, Tom Misteli, Robert D Phair, Rafael Casellas. Nature 2007
204
42

The Treacher Collins syndrome (TCOF1) gene product is involved in ribosomal DNA gene transcription by interacting with upstream binding factor.
Benigno C Valdez, Dale Henning, Rolando B So, Jill Dixon, Michael J Dixon. Proc Natl Acad Sci U S A 2004
186
33

ATM Dependent Silencing Links Nucleolar Chromatin Reorganization to DNA Damage Recognition.
Shane M Harding, Jonathan A Boiarsky, Roger A Greenberg. Cell Rep 2015
95
33


ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage.
Shuhei Matsuoka, Bryan A Ballif, Agata Smogorzewska, E Robert McDonald, Kristen E Hurov, Ji Luo, Corey E Bakalarski, Zhenming Zhao, Nicole Solimini, Yaniv Lerenthal,[...]. Science 2007
26

Tcof1/Treacle is required for neural crest cell formation and proliferation deficiencies that cause craniofacial abnormalities.
Jill Dixon, Natalie C Jones, Lisa L Sandell, Sachintha M Jayasinghe, Jennifer Crane, Jean-Philippe Rey, Michael J Dixon, Paul A Trainor. Proc Natl Acad Sci U S A 2006
245
23

Prevention of the neurocristopathy Treacher Collins syndrome through inhibition of p53 function.
Natalie C Jones, Megan L Lynn, Karin Gaudenz, Daisuke Sakai, Kazushi Aoto, Jean-Phillipe Rey, Earl F Glynn, Lacey Ellington, Chunying Du, Jill Dixon,[...]. Nat Med 2008
292
23

Breaks in the 45S rDNA Lead to Recombination-Mediated Loss of Repeats.
Daniël O Warmerdam, Jeroen van den Berg, René H Medema. Cell Rep 2016
51
29

Mutations in genes encoding subunits of RNA polymerases I and III cause Treacher Collins syndrome.
Johannes G Dauwerse, Jill Dixon, Saskia Seland, Claudia A L Ruivenkamp, Arie van Haeringen, Lies H Hoefsloot, Dorien J M Peters, Agnes Clement-de Boers, Cornelia Daumer-Haas, Robert Maiwald,[...]. Nat Genet 2011
198
20

Loss of Bloom syndrome protein destabilizes human gene cluster architecture.
Michael W Killen, Dawn M Stults, Noritaka Adachi, Les Hanakahi, Andrew J Pierce. Hum Mol Genet 2009
59
22

Human rRNA gene clusters are recombinational hotspots in cancer.
Dawn M Stults, Michael W Killen, Erica P Williamson, Jon S Hourigan, H David Vargas, Susanne M Arnold, Jeffrey A Moscow, Andrew J Pierce. Cancer Res 2009
95
18

Prevention of Treacher Collins syndrome craniofacial anomalies in mouse models via maternal antioxidant supplementation.
Daisuke Sakai, Jill Dixon, Annita Achilleos, Michael Dixon, Paul A Trainor. Nat Commun 2016
52
25

Roles of ATM and NBS1 in chromatin structure modulation and DNA double-strand break repair.
Elijahu Berkovich, Raymond J Monnat, Michael B Kastan. Nat Cell Biol 2007
353
17

The nucleolus under stress.
Séverine Boulon, Belinda J Westman, Saskia Hutten, François-Michel Boisvert, Angus I Lamond. Mol Cell 2010
621
17

ATM-dependent chromatin changes silence transcription in cis to DNA double-strand breaks.
Niraj M Shanbhag, Ilona U Rafalska-Metcalf, Carlo Balane-Bolivar, Susan M Janicki, Roger A Greenberg. Cell 2010
481
17

The Treacher Collins syndrome (TCOF1) gene product is involved in pre-rRNA methylation.
Bianca Gonzales, Dale Henning, Rolando B So, Jill Dixon, Michael J Dixon, Benigno C Valdez. Hum Mol Genet 2005
89
17



Cell-fate determination by ubiquitin-dependent regulation of translation.
Achim Werner, Shintaro Iwasaki, Colleen A McGourty, Sofia Medina-Ruiz, Nia Teerikorpi, Indro Fedrigo, Nicholas T Ingolia, Michael Rape. Nature 2015
100
15

Quantitative proteomics and dynamic imaging of the nucleolus reveal distinct responses to UV and ionizing radiation.
Henna M Moore, Baoyan Bai, François-Michel Boisvert, Leena Latonen, Ville Rantanen, Jeremy C Simpson, Rainer Pepperkok, Angus I Lamond, Marikki Laiho. Mol Cell Proteomics 2011
84
14

The shared genomic architecture of human nucleolar organizer regions.
Ioanna Floutsakou, Saumya Agrawal, Thong T Nguyen, Cathal Seoighe, Austen R D Ganley, Brian McStay. Genome Res 2013
71
14

The DNA-damage response in human biology and disease.
Stephen P Jackson, Jiri Bartek. Nature 2009
14

Ribosomopathies: human disorders of ribosome dysfunction.
Anupama Narla, Benjamin L Ebert. Blood 2010
508
14

Targeting RNA polymerase I with an oral small molecule CX-5461 inhibits ribosomal RNA synthesis and solid tumor growth.
Denis Drygin, Amy Lin, Josh Bliesath, Caroline B Ho, Sean E O'Brien, Chris Proffitt, Mayuko Omori, Mustapha Haddach, Michael K Schwaebe, Adam Siddiqui-Jain,[...]. Cancer Res 2011
334
14

TCOF1 gene encodes a putative nucleolar phosphoprotein that exhibits mutations in Treacher Collins Syndrome throughout its coding region.
C A Wise, L C Chiang, W A Paznekas, M Sharma, M M Musy, J A Ashley, M Lovett, E W Jabs. Proc Natl Acad Sci U S A 1997
113
14

Nucleolar responses to DNA double-strand breaks.
Dorthe Helena Larsen, Manuel Stucki. Nucleic Acids Res 2016
48
20

Treacle recruits RNA polymerase I complex to the nucleolus that is independent of UBF.
Chen-I Lin, Ning-Hsing Yeh. Biochem Biophys Res Commun 2009
27
37

Tissue-selective effects of nucleolar stress and rDNA damage in developmental disorders.
Eliezer Calo, Bo Gu, Margot E Bowen, Fardin Aryan, Antoine Zalc, Jialiang Liang, Ryan A Flynn, Tomek Swigut, Howard Y Chang, Laura D Attardi,[...]. Nature 2018
66
15

The Smc5-Smc6 complex and SUMO modification of Rad52 regulates recombinational repair at the ribosomal gene locus.
Jordi Torres-Rosell, Ivana Sunjevaric, Giacomo De Piccoli, Meik Sacher, Nadine Eckert-Boulet, Robert Reid, Stefan Jentsch, Rodney Rothstein, Luis Aragón, Michael Lisby. Nat Cell Biol 2007
284
13

Genomic architecture and inheritance of human ribosomal RNA gene clusters.
Dawn M Stults, Michael W Killen, Heather H Pierce, Andrew J Pierce. Genome Res 2008
174
13


Treacher Collins syndrome: etiology, pathogenesis and prevention.
Paul A Trainor, Jill Dixon, Michael J Dixon. Eur J Hum Genet 2009
117
13

The epigenetics of rRNA genes: from molecular to chromosome biology.
Brian McStay, Ingrid Grummt. Annu Rev Cell Dev Biol 2008
362
13

The multifunctional nucleolus.
François-Michel Boisvert, Silvana van Koningsbruggen, Joaquín Navascués, Angus I Lamond. Nat Rev Mol Cell Biol 2007
992
13

Characterization of the nucleolar gene product, treacle, in Treacher Collins syndrome.
C Isaac, K L Marsh, W A Paznekas, J Dixon, M J Dixon, E W Jabs, U T Meier. Mol Biol Cell 2000
74
13


Treacle controls the nucleolar response to rDNA breaks via TOPBP1 recruitment and ATR activation.
Clémence Mooser, Ioanna-Eleni Symeonidou, Pia-Amata Leimbacher, Alison Ribeiro, Ann-Marie K Shorrocks, Stephanie Jungmichel, Sara C Larsen, Katja Knechtle, Arti Jasrotia, Diana Zurbriggen,[...]. Nat Commun 2020
20
45


Requirement for PBAF in transcriptional repression and repair at DNA breaks in actively transcribed regions of chromatin.
Andreas Kakarougkas, Amani Ismail, Anna L Chambers, Enriqueta Riballo, Alex D Herbert, Julia Künzel, Markus Löbrich, Penny A Jeggo, Jessica A Downs. Mol Cell 2014
175
11

Dynamic sorting of nuclear components into distinct nucleolar caps during transcriptional inhibition.
Yaron Shav-Tal, Janna Blechman, Xavier Darzacq, Cristina Montagna, Billy T Dye, James G Patton, Robert H Singer, Dov Zipori. Mol Biol Cell 2005
240
11

Inhibition of RNA polymerase I as a therapeutic strategy to promote cancer-specific activation of p53.
Megan J Bywater, Gretchen Poortinga, Elaine Sanij, Nadine Hein, Abigail Peck, Carleen Cullinane, Meaghan Wall, Leonie Cluse, Denis Drygin, Kenna Anderes,[...]. Cancer Cell 2012
359
11

Abundance of ribosomal RNA gene copies maintains genome integrity.
Satoru Ide, Takaaki Miyazaki, Hisaji Maki, Takehiko Kobayashi. Science 2010
195
11


Nucleolar reorganization in response to rDNA damage.
Marjolein van Sluis, Brian McStay. Curr Opin Cell Biol 2017
45
17

Double-strand breaks in ribosomal RNA genes activate a distinct signaling and chromatin response to facilitate nucleolar restructuring and repair.
Lea M Korsholm, Zita Gál, Lin Lin, Oliver Quevedo, Diana A Ahmad, Ekaterina Dulina, Yonglun Luo, Jiri Bartek, Dorthe H Larsen. Nucleic Acids Res 2019
28
28



DNAPKcs-dependent arrest of RNA polymerase II transcription in the presence of DNA breaks.
Tibor Pankotai, Céline Bonhomme, David Chen, Evi Soutoglou. Nat Struct Mol Biol 2012
152
10

The DNA damage response: making it safe to play with knives.
Alberto Ciccia, Stephen J Elledge. Mol Cell 2010
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.