A citation-based method for searching scientific literature

Yasushi Kondo, Chris Oubridge, Anne-Marie M van Roon, Kiyoshi Nagai. Elife 2015
Times Cited: 154







List of co-cited articles
1298 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Crystal structure of human spliceosomal U1 snRNP at 5.5 A resolution.
Daniel A Pomeranz Krummel, Chris Oubridge, Adelaine K W Leung, Jade Li, Kiyoshi Nagai. Nature 2009
238
40

Spliceosome structure and function.
Cindy L Will, Reinhard Lührmann. Cold Spring Harb Perspect Biol 2011
966
32

The spliceosome: design principles of a dynamic RNP machine.
Markus C Wahl, Cindy L Will, Reinhard Lührmann. Cell 2009
23

Functional organization of the Sm core in the crystal structure of human U1 snRNP.
Gert Weber, Simon Trowitzsch, Berthold Kastner, Reinhard Lührmann, Markus C Wahl. EMBO J 2010
99
19

Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for Activation.
Karl Bertram, Dmitry E Agafonov, Olexandr Dybkov, David Haselbach, Majety N Leelaram, Cindy L Will, Henning Urlaub, Berthold Kastner, Reinhard Lührmann, Holger Stark. Cell 2017
141
17

Prespliceosome structure provides insights into spliceosome assembly and regulation.
Clemens Plaschka, Pei-Chun Lin, Clément Charenton, Kiyoshi Nagai. Nature 2018
74
22


U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation.
Daisuke Kaida, Michael G Berg, Ihab Younis, Mumtaz Kasim, Larry N Singh, Lili Wan, Gideon Dreyfuss. Nature 2010
424
15

Cryo-EM structure of the spliceosome immediately after branching.
Wojciech P Galej, Max E Wilkinson, Sebastian M Fica, Chris Oubridge, Andrew J Newman, Kiyoshi Nagai. Nature 2016
163
15

Structure of a yeast activated spliceosome at 3.5 Å resolution.
Chuangye Yan, Ruixue Wan, Rui Bai, Gaoxingyu Huang, Yigong Shi. Science 2016
188
15

The architecture of the spliceosomal U4/U6.U5 tri-snRNP.
Thi Hoang Duong Nguyen, Wojciech P Galej, Xiao-chen Bai, Christos G Savva, Andrew J Newman, Sjors H W Scheres, Kiyoshi Nagai. Nature 2015
158
14

An Atomic Structure of the Human Spliceosome.
Xiaofeng Zhang, Chuangye Yan, Jing Hang, Lorenzo I Finci, Jianlin Lei, Yigong Shi. Cell 2017
141
14

CryoEM structure of Saccharomyces cerevisiae U1 snRNP offers insight into alternative splicing.
Xueni Li, Shiheng Liu, Jiansen Jiang, Lingdi Zhang, Sara Espinosa, Ryan C Hill, Kirk C Hansen, Z Hong Zhou, Rui Zhao. Nat Commun 2017
34
41

Structure of a yeast spliceosome at 3.6-angstrom resolution.
Chuangye Yan, Jing Hang, Ruixue Wan, Min Huang, Catherine C L Wong, Yigong Shi. Science 2015
250
13

A day in the life of the spliceosome.
A Gregory Matera, Zefeng Wang. Nat Rev Mol Cell Biol 2014
593
13

Molecular architecture of the human U4/U6.U5 tri-snRNP.
Dmitry E Agafonov, Berthold Kastner, Olexandr Dybkov, Romina V Hofele, Wen-Ti Liu, Henning Urlaub, Reinhard Lührmann, Holger Stark. Science 2016
131
13

The 3.8 Å structure of the U4/U6.U5 tri-snRNP: Insights into spliceosome assembly and catalysis.
Ruixue Wan, Chuangye Yan, Rui Bai, Lin Wang, Min Huang, Catherine C L Wong, Yigong Shi. Science 2016
125
13

Postcatalytic spliceosome structure reveals mechanism of 3'-splice site selection.
Max E Wilkinson, Sebastian M Fica, Wojciech P Galej, Christine M Norman, Andrew J Newman, Kiyoshi Nagai. Science 2017
68
19

Are snRNPs involved in splicing?
M R Lerner, J A Boyle, S M Mount, S L Wolin, J A Steitz. Nature 1980
13

Structure of a pre-catalytic spliceosome.
Clemens Plaschka, Pei-Chun Lin, Kiyoshi Nagai. Nature 2017
135
13

Cryo-EM structure of a human spliceosome activated for step 2 of splicing.
Karl Bertram, Dmitry E Agafonov, Wen-Ti Liu, Olexandr Dybkov, Cindy L Will, Klaus Hartmuth, Henning Urlaub, Berthold Kastner, Holger Stark, Reinhard Lührmann. Nature 2017
160
13

Structure of a human catalytic step I spliceosome.
Xiechao Zhan, Chuangye Yan, Xiaofeng Zhang, Jianlin Lei, Yigong Shi. Science 2018
79
16

Structure of the human activated spliceosome in three conformational states.
Xiaofeng Zhang, Chuangye Yan, Xiechao Zhan, Lijia Li, Jianlin Lei, Yigong Shi. Cell Res 2018
117
13

Mechanism of 5' splice site transfer for human spliceosome activation.
Clément Charenton, Max E Wilkinson, Kiyoshi Nagai. Science 2019
70
18

Structural basis of pre-mRNA splicing.
Jing Hang, Ruixue Wan, Chuangye Yan, Yigong Shi. Science 2015
137
12


Cryo-EM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 Å resolution.
Thi Hoang Duong Nguyen, Wojciech P Galej, Xiao-Chen Bai, Chris Oubridge, Andrew J Newman, Sjors H W Scheres, Kiyoshi Nagai. Nature 2016
155
12

Structure of a yeast catalytic step I spliceosome at 3.4 Å resolution.
Ruixue Wan, Chuangye Yan, Rui Bai, Gaoxingyu Huang, Yigong Shi. Science 2016
146
12

Structural Insights into Nuclear pre-mRNA Splicing in Higher Eukaryotes.
Berthold Kastner, Cindy L Will, Holger Stark, Reinhard Lührmann. Cold Spring Harb Perspect Biol 2019
90
13

RNA Splicing by the Spliceosome.
Max E Wilkinson, Clément Charenton, Kiyoshi Nagai. Annu Rev Biochem 2020
180
12

Pick one, but be quick: 5' splice sites and the problems of too many choices.
Xavier Roca, Adrian R Krainer, Ian C Eperon. Genes Dev 2013
140
11

Structure of a yeast step II catalytically activated spliceosome.
Chuangye Yan, Ruixue Wan, Rui Bai, Gaoxingyu Huang, Yigong Shi. Science 2017
103
11

A spliceosome intermediate with loosely associated tri-snRNP accumulates in the absence of Prp28 ATPase activity.
Carsten Boesler, Norbert Rigo, Maria M Anokhina, Marcel J Tauchert, Dmitry E Agafonov, Berthold Kastner, Henning Urlaub, Ralf Ficner, Cindy L Will, Reinhard Lührmann. Nat Commun 2016
39
28


Expansion of the eukaryotic proteome by alternative splicing.
Timothy W Nilsen, Brenton R Graveley. Nature 2010
11

Identification and characterization of a spinal muscular atrophy-determining gene.
S Lefebvre, L Bürglen, S Reboullet, O Clermont, P Burlet, L Viollet, B Benichou, C Cruaud, P Millasseau, M Zeviani. Cell 1995
11

Widespread recognition of 5' splice sites by noncanonical base-pairing to U1 snRNA involving bulged nucleotides.
Xavier Roca, Martin Akerman, Hans Gaus, Andrés Berdeja, C Frank Bennett, Adrian R Krainer. Genes Dev 2012
65
16

Interaction between the RNA binding domains of Ser-Arg splicing factor 1 and U1-70K snRNP protein determines early spliceosome assembly.
Suhyung Cho, Amy Hoang, Rahul Sinha, Xiang-Yang Zhong, Xiang-Dong Fu, Adrian R Krainer, Gourisankar Ghosh. Proc Natl Acad Sci U S A 2011
137
11

Structure and Conformational Dynamics of the Human Spliceosomal Bact Complex.
David Haselbach, Ilya Komarov, Dmitry E Agafonov, Klaus Hartmuth, Benjamin Graf, Olexandr Dybkov, Henning Urlaub, Berthold Kastner, Reinhard Lührmann, Holger Stark. Cell 2018
119
11

Stem-loop 4 of U1 snRNA is essential for splicing and interacts with the U2 snRNP-specific SF3A1 protein during spliceosome assembly.
Shalini Sharma, Somsakul Pop Wongpalee, Ajay Vashisht, James A Wohlschlegel, Douglas L Black. Genes Dev 2014
33
33


A unified mechanism for intron and exon definition and back-splicing.
Xueni Li, Shiheng Liu, Lingdi Zhang, Aaron Issaian, Ryan C Hill, Sara Espinosa, Shasha Shi, Yanxiang Cui, Kalli Kappel, Rhiju Das,[...]. Nature 2019
74
14

Mechanisms and Regulation of Alternative Pre-mRNA Splicing.
Yeon Lee, Donald C Rio. Annu Rev Biochem 2015
655
10

RNA catalyses nuclear pre-mRNA splicing.
Sebastian M Fica, Nicole Tuttle, Thaddeus Novak, Nan-Sheng Li, Jun Lu, Prakash Koodathingal, Qing Dai, Jonathan P Staley, Joseph A Piccirilli. Nature 2013
220
10


Structure of a spliceosome remodelled for exon ligation.
Sebastian M Fica, Chris Oubridge, Wojciech P Galej, Max E Wilkinson, Xiao-Chen Bai, Andrew J Newman, Kiyoshi Nagai. Nature 2017
118
10

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
10


Recognition of atypical 5' splice sites by shifted base-pairing to U1 snRNA.
Xavier Roca, Adrian R Krainer. Nat Struct Mol Biol 2009
62
16

Molecular Mechanisms of pre-mRNA Splicing through Structural Biology of the Spliceosome.
Chuangye Yan, Ruixue Wan, Yigong Shi. Cold Spring Harb Perspect Biol 2019
71
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.