A citation-based method for searching scientific literature

Vitaly A Likhoshvai, Tamara M Khlebodarova, Sergei I Bazhan, Irina A Gainova, Valery A Chereshnev, Gennady A Bocharov. BMC Genomics 2014
Times Cited: 13







List of co-cited articles
101 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


RNA-directed remodeling of the HIV-1 protein Rev orchestrates assembly of the Rev-Rev response element complex.
Bhargavi Jayaraman, David C Crosby, Christina Homer, Isabel Ribeiro, David Mavor, Alan D Frankel. Elife 2014
45
23

The export receptor Crm1 forms a dimer to promote nuclear export of HIV RNA.
David S Booth, Yifan Cheng, Alan D Frankel. Elife 2014
44
23


Structural determinants of nuclear export signal orientation in binding to exportin CRM1.
Ho Yee Joyce Fung, Szu-Chin Fu, Chad A Brautigam, Yuh Min Chook. Elife 2015
51
23


The HIV-1 Rev protein.
V W Pollard, M H Malim. Annu Rev Microbiol 1998
545
23

Limited nucleotide changes in the Rev response element (RRE) during HIV-1 infection alter overall Rev-RRE activity and Rev multimerization.
Emily A Sloan, Mary F Kearney, Laurie R Gray, Kathryn Anastos, Eric S Daar, Joseph Margolick, Frank Maldarelli, Marie-Louise Hammarskjold, David Rekosh. J Virol 2013
21
23

Structural basis for cooperative RNA binding and export complex assembly by HIV Rev.
Matthew D Daugherty, Bella Liu, Alan D Frankel. Nat Struct Mol Biol 2010
120
23

Evolutionary Biology at Belyaev Conference - 2017.
Yuriy L Orlov, Ancha V Baranova, Yuriy E Herbeck. BMC Evol Biol 2017
11
27

Bioinformatics research at BGRS-2018.
Tatiana V Tatarinova, Ming Chen, Yuriy L Orlov. BMC Bioinformatics 2019
15
23


On the control mechanisms of the nitrite level in Escherichia coli cells: the mathematical model.
Tamara M Khlebodarova, Nataly A Ree, Vitaly A Likhoshvai. BMC Microbiol 2016
15
23

Computational models in genetics at BGRS\SB-2016: introductory note.
Yuriy L Orlov, Ancha V Baranova, Arcady L Markel. BMC Genet 2016
28
23

Computational genomics at BGRS\SB-2016: introductory note.
Yuriy L Orlov, Ancha V Baranova, Ralf Hofestädt, Nikolay A Kolchanov. BMC Genomics 2016
26
23

Persister Cells - a Plausible Outcome of Neutral Coevolutionary Drift.
T M Khlebodarova, V A Likhoshvai. Sci Rep 2018
9
33

Stochastic gene expression in a lentiviral positive-feedback loop: HIV-1 Tat fluctuations drive phenotypic diversity.
Leor S Weinberger, John C Burnett, Jared E Toettcher, Adam P Arkin, David V Schaffer. Cell 2005
426
15

Stochasticity in gene expression: from theories to phenotypes.
Mads Kaern, Timothy C Elston, William J Blake, James J Collins. Nat Rev Genet 2005
15

Control of stochastic gene expression by host factors at the HIV promoter.
John C Burnett, Kathryn Miller-Jensen, Priya S Shah, Adam P Arkin, David V Schaffer. PLoS Pathog 2009
81
15

Orthogonal control of expression mean and variance by epigenetic features at different genomic loci.
Siddharth S Dey, Jonathan E Foley, Prajit Limsirichai, David V Schaffer, Adam P Arkin. Mol Syst Biol 2015
58
15


Transcriptional burst frequency and burst size are equally modulated across the human genome.
Roy D Dar, Brandon S Razooky, Abhyudai Singh, Thomas V Trimeloni, James M McCollum, Chris D Cox, Michael L Simpson, Leor S Weinberger. Proc Natl Acad Sci U S A 2012
238
15

Screening for noise in gene expression identifies drug synergies.
Roy D Dar, Nina N Hosmane, Michelle R Arkin, Robert F Siliciano, Leor S Weinberger. Science 2014
125
15

Control of stochasticity in eukaryotic gene expression.
Jonathan M Raser, Erin K O'Shea. Science 2004
951
15

Stochastic gene expression as a molecular switch for viral latency.
Abhyudai Singh, Leor S Weinberger. Curr Opin Microbiol 2009
78
15

Genetic selection for context-dependent stochastic phenotypes: Sp1 and TATA mutations increase phenotypic noise in HIV-1 gene expression.
Kathryn Miller-Jensen, Ron Skupsky, Priya S Shah, Adam P Arkin, David V Schaffer. PLoS Comput Biol 2013
19
15

Transcriptional bursting from the HIV-1 promoter is a significant source of stochastic noise in HIV-1 gene expression.
Abhyudai Singh, Brandon Razooky, Chris D Cox, Michael L Simpson, Leor S Weinberger. Biophys J 2010
120
15

Varying virulence: epigenetic control of expression noise and disease processes.
Kathryn Miller-Jensen, Siddharth S Dey, David V Schaffer, Adam P Arkin. Trends Biotechnol 2011
44
15



NES consensus redefined by structures of PKI-type and Rev-type nuclear export signals bound to CRM1.
Thomas Güttler, Tobias Madl, Piotr Neumann, Danilo Deichsel, Lorenzo Corsini, Thomas Monecke, Ralf Ficner, Michael Sattler, Dirk Görlich. Nat Struct Mol Biol 2010
170
15

Thermodynamics of Rev-RNA interactions in HIV-1 Rev-RRE assembly.
Bhargavi Jayaraman, David Mavor, John D Gross, Alan D Frankel. Biochemistry 2015
16
15

Functional variability of Rev response element in HIV-1 primary isolates.
Angsana Phuphuakrat, Prasert Auewarakul. Virus Genes 2005
12
16


Persistence of attenuated rev genes in a human immunodeficiency virus type 1-infected asymptomatic individual.
A K Iversen, E G Shpaer, A G Rodrigo, M S Hirsch, B D Walker, H W Sheppard, T C Merigan, J I Mullins. J Virol 1995
89
15


Cytoplasmic HIV-1 RNA is mainly transported by diffusion in the presence or absence of Gag protein.
Jianbo Chen, David Grunwald, Luca Sardo, Andrea Galli, Sergey Plisov, Olga A Nikolaitchik, De Chen, Stephen Lockett, Daniel R Larson, Vinay K Pathak,[...]. Proc Natl Acad Sci U S A 2014
42
15


Persistence of attenuated HIV-1 rev alleles in an epidemiologically linked cohort of long-term survivors infected with nef-deleted virus.
Melissa J Churchill, Lisa Chiavaroli, Steven L Wesselingh, Paul R Gorry. Retrovirology 2007
26
15

HIV-1: fifteen proteins and an RNA.
A D Frankel, J A Young. Annu Rev Biochem 1998
523
15

HIV-1 structural gene expression requires binding of the Rev trans-activator to its RNA target sequence.
M H Malim, L S Tiley, D F McCarn, J R Rusche, J Hauber, B R Cullen. Cell 1990
403
15

Implications of the HIV-1 Rev dimer structure at 3.2 A resolution for multimeric binding to the Rev response element.
Michael A DiMattia, Norman R Watts, Stephen J Stahl, Christoph Rader, Paul T Wingfield, David I Stuart, Alasdair C Steven, Jonathan M Grimes. Proc Natl Acad Sci U S A 2010
98
15

Functional variation of HIV-1 Rev Response Element in a longitudinally studied cohort.
Angsana Phuphuakrat, Robert M Paris, Sorachai Nittayaphan, Suda Louisirirotchanakul, Prasert Auewarakul. J Med Virol 2005
10
20


Structural basis for cooperativity of CRM1 export complex formation.
Thomas Monecke, David Haselbach, Béla Voß, Andreas Russek, Piotr Neumann, Emma Thomson, Ed Hurt, Ulrich Zachariae, Holger Stark, Helmut Grubmüller,[...]. Proc Natl Acad Sci U S A 2013
48
15

A molecular rheostat. Co-operative rev binding to stem I of the rev-response element modulates human immunodeficiency virus type-1 late gene expression.
D A Mann, I Mikaélian, R W Zemmel, S M Green, A D Lowe, T Kimura, M Singh, P J Butler, M J Gait, J Karn. J Mol Biol 1994
156
15

Requirement of DDX3 DEAD box RNA helicase for HIV-1 Rev-RRE export function.
Venkat S R K Yedavalli, Christine Neuveut, Ya-Hui Chi, Lawrence Kleiman, Kuan-Teh Jeang. Cell 2004
399
15

HIV-1 regulator of virion expression (Rev) protein binds to an RNA stem-loop structure located within the Rev response element region.
S Heaphy, C Dingwall, I Ernberg, M J Gait, S M Green, J Karn, A D Lowe, M Singh, M A Skinner. Cell 1990
333
15

Minimal Rev-response element for type 1 human immunodeficiency virus.
X J Huang, T J Hope, B L Bond, D McDonald, K Grahl, T G Parslow. J Virol 1991
114
15

The HIV-1 Rev response element (RRE) adopts alternative conformations that promote different rates of virus replication.
Chringma Sherpa, Jason W Rausch, Stuart F J Le Grice, Marie-Louise Hammarskjold, David Rekosh. Nucleic Acids Res 2015
47
15

Identification of a heterogeneous nuclear ribonucleoprotein-recognition region in the HIV Rev protein.
Kamyar Hadian, Michelle Vincendeau, Nina Mäusbacher, Daniel Nagel, Stefanie M Hauck, Marius Ueffing, Abraham Loyter, Thomas Werner, Horst Wolff, Ruth Brack-Werner. J Biol Chem 2009
26
15


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.