A citation-based method for searching scientific literature

Shila Gilbert, Harini Nivarthi, Christopher N Mayhew, Yuan-Hung Lo, Taeko K Noah, Jefferson Vallance, Thomas Rülicke, Mathias Müller, Anil G Jegga, Wenjuan Tang, Dongsheng Zhang, Michael Helmrath, Noah Shroyer, Richard Moriggl, Xiaonan Han. Stem Cell Reports 2015
Times Cited: 46







List of co-cited articles
374 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Identification of stem cells in small intestine and colon by marker gene Lgr5.
Nick Barker, Johan H van Es, Jeroen Kuipers, Pekka Kujala, Maaike van den Born, Miranda Cozijnsen, Andrea Haegebarth, Jeroen Korving, Harry Begthel, Peter J Peters,[...]. Nature 2007
30

Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche.
Toshiro Sato, Robert G Vries, Hugo J Snippert, Marc van de Wetering, Nick Barker, Daniel E Stange, Johan H van Es, Arie Abo, Pekka Kujala, Peter J Peters,[...]. Nature 2009
28

Interleukin-22 promotes intestinal-stem-cell-mediated epithelial regeneration.
Caroline A Lindemans, Marco Calafiore, Anna M Mertelsmann, Margaret H O'Connor, Jarrod A Dudakov, Robert R Jenq, Enrico Velardi, Lauren F Young, Odette M Smith, Gillian Lawrence,[...]. Nature 2015
596
28

Enterocyte STAT5 promotes mucosal wound healing via suppression of myosin light chain kinase-mediated loss of barrier function and inflammation.
Shila Gilbert, Rongli Zhang, Lee Denson, Richard Moriggl, Kris Steinbrecher, Noah Shroyer, James Lin, Xiaonan Han. EMBO Mol Med 2012
53
28

Paneth cells constitute the niche for Lgr5 stem cells in intestinal crypts.
Toshiro Sato, Johan H van Es, Hugo J Snippert, Daniel E Stange, Robert G Vries, Maaike van den Born, Nick Barker, Noah F Shroyer, Marc van de Wetering, Hans Clevers. Nature 2011
17

Crypt base columnar stem cells in small intestines of mice are radioresistant.
Guoqiang Hua, Tin Htwe Thin, Regina Feldman, Adriana Haimovitz-Friedman, Hans Clevers, Zvi Fuks, Richard Kolesnick. Gastroenterology 2012
153
17

Bmi1 is expressed in vivo in intestinal stem cells.
Eugenio Sangiorgi, Mario R Capecchi. Nat Genet 2008
895
15


The intestinal stem cell markers Bmi1 and Lgr5 identify two functionally distinct populations.
Kelley S Yan, Luis A Chia, Xingnan Li, Akifumi Ootani, James Su, Josephine Y Lee, Nan Su, Yuling Luo, Sarah C Heilshorn, Manuel R Amieva,[...]. Proc Natl Acad Sci U S A 2012
564
15

Intestinal label-retaining cells are secretory precursors expressing Lgr5.
Simon J A Buczacki, Heather Ireland Zecchini, Anna M Nicholson, Roslin Russell, Louis Vermeulen, Richard Kemp, Douglas J Winton. Nature 2013
533
13

Lgr5+ stem cells are indispensable for radiation-induced intestinal regeneration.
Ciara Metcalfe, Noelyn M Kljavin, Ryan Ybarra, Frederic J de Sauvage. Cell Stem Cell 2014
365
13

Mouse telomerase reverse transcriptase (mTert) expression marks slowly cycling intestinal stem cells.
Robert K Montgomery, Diana L Carlone, Camilla A Richmond, Loredana Farilla, Mariette E G Kranendonk, Daniel E Henderson, Nana Yaa Baffour-Awuah, Dana M Ambruzs, Laura K Fogli, Selma Algra,[...]. Proc Natl Acad Sci U S A 2011
375
13

A reserve stem cell population in small intestine renders Lgr5-positive cells dispensable.
Hua Tian, Brian Biehs, Søren Warming, Kevin G Leong, Linda Rangell, Ophir D Klein, Frederic J de Sauvage. Nature 2011
802
13

Interconversion between intestinal stem cell populations in distinct niches.
Norifumi Takeda, Rajan Jain, Matthew R LeBoeuf, Qiaohong Wang, Min Min Lu, Jonathan A Epstein. Science 2011
517
13

Regulation of intestinal barrier function by signal transducer and activator of transcription 5b.
X Han, X Ren, I Jurickova, K Groschwitz, B A Pasternak, H Xu, T A Wilson, S P Hogan, L A Denson. Gut 2009
42
14

STAT3 links IL-22 signaling in intestinal epithelial cells to mucosal wound healing.
Geethanjali Pickert, Clemens Neufert, Moritz Leppkes, Yan Zheng, Nadine Wittkopf, Moritz Warntjen, Hans-Anton Lehr, Sebastian Hirth, Benno Weigmann, Stefan Wirtz,[...]. J Exp Med 2009
709
13

Dll1+ secretory progenitor cells revert to stem cells upon crypt damage.
Johan H van Es, Toshiro Sato, Marc van de Wetering, Anna Lyubimova, Annie Ng Yee Nee, Alex Gregorieff, Nobuo Sasaki, Laura Zeinstra, Maaike van den Born, Jeroen Korving,[...]. Nat Cell Biol 2012
519
10

The pan-ErbB negative regulator Lrig1 is an intestinal stem cell marker that functions as a tumor suppressor.
Anne E Powell, Yang Wang, Yina Li, Emily J Poulin, Anna L Means, Mary K Washington, James N Higginbotham, Alwin Juchheim, Nripesh Prasad, Shawn E Levy,[...]. Cell 2012
483
10

Krt19(+)/Lgr5(-) Cells Are Radioresistant Cancer-Initiating Stem Cells in the Colon and Intestine.
Samuel Asfaha, Yoku Hayakawa, Ashlesha Muley, Sarah Stokes, Trevor A Graham, Russell E Ericksen, Christoph B Westphalen, Johannes von Burstin, Teresa L Mastracci, Daniel L Worthley,[...]. Cell Stem Cell 2015
135
10

Cytokine/Jak/Stat signaling mediates regeneration and homeostasis in the Drosophila midgut.
Huaqi Jiang, Parthive H Patel, Alexander Kohlmaier, Marc O Grenley, Donald G McEwen, Bruce A Edgar. Cell 2009
675
10

Intestinal crypt homeostasis results from neutral competition between symmetrically dividing Lgr5 stem cells.
Hugo J Snippert, Laurens G van der Flier, Toshiro Sato, Johan H van Es, Maaike van den Born, Carla Kroon-Veenboer, Nick Barker, Allon M Klein, Jacco van Rheenen, Benjamin D Simons,[...]. Cell 2010
10

Notch signaling modulates proliferation and differentiation of intestinal crypt base columnar stem cells.
Kelli L VanDussen, Alexis J Carulli, Theresa M Keeley, Sanjeevkumar R Patel, Brent J Puthoff, Scott T Magness, Ivy T Tran, Ivan Maillard, Christian Siebel, Åsa Kolterud,[...]. Development 2012
363
10

Functional engraftment of colon epithelium expanded in vitro from a single adult Lgr5⁺ stem cell.
Shiro Yui, Tetsuya Nakamura, Toshiro Sato, Yasuhiro Nemoto, Tomohiro Mizutani, Xiu Zheng, Shizuko Ichinose, Takashi Nagaishi, Ryuichi Okamoto, Kiichiro Tsuchiya,[...]. Nat Med 2012
507
10

IL-22 ameliorates intestinal inflammation in a mouse model of ulcerative colitis.
Ken Sugimoto, Atsuhiro Ogawa, Emiko Mizoguchi, Yasuyo Shimomura, Akira Andoh, Atul K Bhan, Richard S Blumberg, Ramnik J Xavier, Atsushi Mizoguchi. J Clin Invest 2008
770
10

Cytokines in inflammatory bowel disease.
Markus F Neurath. Nat Rev Immunol 2014
10

Mapping early fate determination in Lgr5+ crypt stem cells using a novel Ki67-RFP allele.
Onur Basak, Maaike van de Born, Jeroen Korving, Joep Beumer, Stefan van der Elst, Johan H van Es, Hans Clevers. EMBO J 2014
92
10

Yap-dependent reprogramming of Lgr5(+) stem cells drives intestinal regeneration and cancer.
Alex Gregorieff, Yu Liu, Mohammad R Inanlou, Yuliya Khomchuk, Jeffrey L Wrana. Nature 2015
339
10

Intestinal Enteroendocrine Lineage Cells Possess Homeostatic and Injury-Inducible Stem Cell Activity.
Kelley S Yan, Olivier Gevaert, Grace X Y Zheng, Benedict Anchang, Christopher S Probert, Kathryn A Larkin, Paige S Davies, Zhuan-Fen Cheng, John S Kaddis, Arnold Han,[...]. Cell Stem Cell 2017
200
10


SOX9 maintains reserve stem cells and preserves radioresistance in mouse small intestine.
Kyle C Roche, Adam D Gracz, Xiao Fu Liu, Victoria Newton, Haruhiko Akiyama, Scott T Magness. Gastroenterology 2015
108
8

An in vivo model of human small intestine using pluripotent stem cells.
Carey L Watson, Maxime M Mahe, Jorge Múnera, Jonathan C Howell, Nambirajan Sundaram, Holly M Poling, Jamie I Schweitzer, Jefferson E Vallance, Christopher N Mayhew, Ying Sun,[...]. Nat Med 2014
347
8

Stats: transcriptional control and biological impact.
David E Levy, J E Darnell. Nat Rev Mol Cell Biol 2002
8

Blockade of interleukin 6 trans signaling suppresses T-cell resistance against apoptosis in chronic intestinal inflammation: evidence in crohn disease and experimental colitis in vivo.
R Atreya, J Mudter, S Finotto, J Müllberg, T Jostock, S Wirtz, M Schütz, B Bartsch, M Holtmann, C Becker,[...]. Nat Med 2000
999
8

Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Luke Jostins, Stephan Ripke, Rinse K Weersma, Richard H Duerr, Dermot P McGovern, Ken Y Hui, James C Lee, L Philip Schumm, Yashoda Sharma, Carl A Anderson,[...]. Nature 2012
8

Epithelial restitution and wound healing in inflammatory bowel disease.
Andreas Sturm, Axel U Dignass. World J Gastroenterol 2008
234
8



Establishment of Gastrointestinal Epithelial Organoids.
Maxime M Mahe, Eitaro Aihara, Michael A Schumacher, Yana Zavros, Marshall H Montrose, Michael A Helmrath, Toshiro Sato, Noah F Shroyer. Curr Protoc Mouse Biol 2013
186
8

Directed differentiation of human pluripotent stem cells into intestinal tissue in vitro.
Jason R Spence, Christopher N Mayhew, Scott A Rankin, Matthew F Kuhar, Jefferson E Vallance, Kathryn Tolle, Elizabeth E Hoskins, Vladimir V Kalinichenko, Susanne I Wells, Aaron M Zorn,[...]. Nature 2011
8

Wnt5a potentiates TGF-β signaling to promote colonic crypt regeneration after tissue injury.
Hiroyuki Miyoshi, Rieko Ajima, Christine T Luo, Terry P Yamaguchi, Thaddeus S Stappenbeck. Science 2012
304
8

Transplantation of expanded fetal intestinal progenitors contributes to colon regeneration after injury.
Robert P Fordham, Shiro Yui, Nicholas R F Hannan, Christoffer Soendergaard, Alison Madgwick, Pawel J Schweiger, Ole H Nielsen, Ludovic Vallier, Roger A Pedersen, Tetsuya Nakamura,[...]. Cell Stem Cell 2013
241
8

The Colonic Crypt Protects Stem Cells from Microbiota-Derived Metabolites.
Gerard E Kaiko, Stacy H Ryu, Olivia I Koues, Patrick L Collins, Lilianna Solnica-Krezel, Edward J Pearce, Erika L Pearce, Eugene M Oltz, Thaddeus S Stappenbeck. Cell 2016
320
8

Epithelial NEMO links innate immunity to chronic intestinal inflammation.
Arianna Nenci, Christoph Becker, Andy Wullaert, Ralph Gareus, Geert van Loo, Silvio Danese, Marion Huth, Alexei Nikolaev, Clemens Neufert, Blair Madison,[...]. Nature 2007
787
8

A preliminary study of growth hormone therapy for Crohn's disease.
A E Slonim, L Bulone, M B Damore, T Goldberg, M A Wingertzahn, M J McKinley. N Engl J Med 2000
153
8

The JAK-STAT pathway at twenty.
George R Stark, James E Darnell. Immunity 2012
927
8


Paneth Cells Respond to Inflammation and Contribute to Tissue Regeneration by Acquiring Stem-like Features through SCF/c-Kit Signaling.
Mark Schmitt, Matthias Schewe, Andrea Sacchetti, Danny Feijtel, Wesley S van de Geer, Miriam Teeuwssen, Hein F Sleddens, Rosalie Joosten, Martin E van Royen, Harmen J G van de Werken,[...]. Cell Rep 2018
111
8

Parasitic helminths induce fetal-like reversion in the intestinal stem cell niche.
Ysbrand M Nusse, Adam K Savage, Pauline Marangoni, Axel K M Rosendahl-Huber, Tyler A Landman, Frederic J de Sauvage, Richard M Locksley, Ophir D Klein. Nature 2018
131
8

Constitutive STAT5 activation regulates Paneth and Paneth-like cells to control Clostridium difficile colitis.
Ruixue Liu, Richard Moriggl, Dongsheng Zhang, Haifeng Li, Rebekah Karns, Hai-Bin Ruan, Haitao Niu, Christopher Mayhew, Carey Watson, Hansraj Bangar,[...]. Life Sci Alliance 2019
12
33



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.