A citation-based method for searching scientific literature

Michał Startek, Przemyslaw Szafranski, Tomasz Gambin, Ian M Campbell, Patricia Hixson, Chad A Shaw, Paweł Stankiewicz, Anna Gambin. Nucleic Acids Res 2015
Times Cited: 45







List of co-cited articles
443 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Human endogenous retroviral elements promote genome instability via non-allelic homologous recombination.
Ian M Campbell, Tomasz Gambin, Piotr Dittwald, Christine R Beck, Andrey Shuvarikov, Patricia Hixson, Ankita Patel, Anna Gambin, Chad A Shaw, Jill A Rosenfeld,[...]. BMC Biol 2014
41
34

Initial sequencing and analysis of the human genome.
E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh,[...]. Nature 2001
28

The Alu-rich genomic architecture of SPAST predisposes to diverse and functionally distinct disease-associated CNV alleles.
Philip M Boone, Bo Yuan, Ian M Campbell, Jennifer C Scull, Marjorie A Withers, Brett C Baggett, Christine R Beck, Christine J Shaw, Pawel Stankiewicz, Paolo Moretti,[...]. Am J Hum Genet 2014
60
22

Nonallelic homologous recombination between retrotransposable elements is a driver of de novo unbalanced translocations.
Caroline Robberecht, Thierry Voet, Masoud Zamani Esteki, Beata A Nowakowska, Joris R Vermeesch. Genome Res 2013
54
22

Mechanisms underlying structural variant formation in genomic disorders.
Claudia M B Carvalho, James R Lupski. Nat Rev Genet 2016
276
22


Alu repeats and human genomic diversity.
Mark A Batzer, Prescott L Deininger. Nat Rev Genet 2002
927
15

Repetitive elements may comprise over two-thirds of the human genome.
A P Jason de Koning, Wanjun Gu, Todd A Castoe, Mark A Batzer, David D Pollock. PLoS Genet 2011
597
15

NAHR-mediated copy-number variants in a clinical population: mechanistic insights into both genomic disorders and Mendelizing traits.
Piotr Dittwald, Tomasz Gambin, Przemyslaw Szafranski, Jian Li, Stephen Amato, Michael Y Divon, Lisa Ximena Rodríguez Rojas, Lindsay E Elton, Daryl A Scott, Christian P Schaaf,[...]. Genome Res 2013
78
13

Initial sequencing and comparative analysis of the mouse genome.
Robert H Waterston, Kerstin Lindblad-Toh, Ewan Birney, Jane Rogers, Josep F Abril, Pankaj Agarwal, Richa Agarwala, Rachel Ainscough, Marina Alexandersson, Peter An,[...]. Nature 2002
13

Regulatory activities of transposable elements: from conflicts to benefits.
Edward B Chuong, Nels C Elde, Cédric Feschotte. Nat Rev Genet 2017
494
13

Paired-end mapping reveals extensive structural variation in the human genome.
Jan O Korbel, Alexander Eckehart Urban, Jason P Affourtit, Brian Godwin, Fabian Grubert, Jan Fredrik Simons, Philip M Kim, Dean Palejev, Nicholas J Carriero, Lei Du,[...]. Science 2007
769
11

Mechanisms for recurrent and complex human genomic rearrangements.
Pengfei Liu, Claudia M B Carvalho, P J Hastings, James R Lupski. Curr Opin Genet Dev 2012
216
11

Frequency of nonallelic homologous recombination is correlated with length of homology: evidence that ectopic synapsis precedes ectopic crossing-over.
Pengfei Liu, Melanie Lacaria, Feng Zhang, Marjorie Withers, P J Hastings, James R Lupski. Am J Hum Genet 2011
74
11

Human Structural Variation: Mechanisms of Chromosome Rearrangements.
Brooke Weckselblatt, M Katharine Rudd. Trends Genet 2015
101
11



Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals.
Vincent J Lynch, Robert D Leclerc, Gemma May, Günter P Wagner. Nat Genet 2011
236
11

Alu-mediated diverse and complex pathogenic copy-number variants within human chromosome 17 at p13.3.
Shen Gu, Bo Yuan, Ian M Campbell, Christine R Beck, Claudia M B Carvalho, Sandesh C S Nagamani, Ayelet Erez, Ankita Patel, Carlos A Bacino, Chad A Shaw,[...]. Hum Mol Genet 2015
55
11



Unbalanced translocations arise from diverse mutational mechanisms including chromothripsis.
Brooke Weckselblatt, Karen E Hermetz, M Katharine Rudd. Genome Res 2015
40
10

Mechanisms of change in gene copy number.
P J Hastings, James R Lupski, Susan M Rosenberg, Grzegorz Ira. Nat Rev Genet 2009
731
8

Rare pathogenic microdeletions and tandem duplications are microhomology-mediated and stimulated by local genomic architecture.
Lisenka E L M Vissers, Samarth S Bhatt, Irene M Janssen, Zhilian Xia, Seema R Lalani, Rolph Pfundt, Katarzyna Derwinska, Bert B A de Vries, Christian Gilissen, Alexander Hoischen,[...]. Hum Mol Genet 2009
121
8

Chromosome catastrophes involve replication mechanisms generating complex genomic rearrangements.
Pengfei Liu, Ayelet Erez, Sandesh C Sreenath Nagamani, Shweta U Dhar, Katarzyna E Kołodziejska, Avinash V Dharmadhikari, M Lance Cooper, Joanna Wiszniewska, Feng Zhang, Marjorie A Withers,[...]. Cell 2011
286
8

Structural variation in the human genome and its role in disease.
Paweł Stankiewicz, James R Lupski. Annu Rev Med 2010
676
8


A unified classification system for eukaryotic transposable elements.
Thomas Wicker, François Sabot, Aurélie Hua-Van, Jeffrey L Bennetzen, Pierre Capy, Boulos Chalhoub, Andrew Flavell, Philippe Leroy, Michele Morgante, Olivier Panaud,[...]. Nat Rev Genet 2007
8

The origin and behavior of mutable loci in maize.
B McCLINTOCK. Proc Natl Acad Sci U S A 1950
717
8




Double-strand break end resection and repair pathway choice.
Lorraine S Symington, Jean Gautier. Annu Rev Genet 2011
900
8

The contribution of alu elements to mutagenic DNA double-strand break repair.
Maria E Morales, Travis B White, Vincent A Streva, Cecily B DeFreece, Dale J Hedges, Prescott L Deininger. PLoS Genet 2015
40
10

LINE-1 retrotransposition activity in human genomes.
Christine R Beck, Pamela Collier, Catriona Macfarlane, Maika Malig, Jeffrey M Kidd, Evan E Eichler, Richard M Badge, John V Moran. Cell 2010
367
8

Hot L1s account for the bulk of retrotransposition in the human population.
Brook Brouha, Joshua Schustak, Richard M Badge, Sheila Lutz-Prigge, Alexander H Farley, John V Moran, Haig H Kazazian. Proc Natl Acad Sci U S A 2003
659
8

Chromosomal translocation mechanisms at intronic alu elements in mammalian cells.
Beth Elliott, Christine Richardson, Maria Jasin. Mol Cell 2005
123
8


Transposable element islands facilitate adaptation to novel environments in an invasive species.
Lukas Schrader, Jay W Kim, Daniel Ence, Aleksey Zimin, Antonia Klein, Katharina Wyschetzki, Tobias Weichselgartner, Carsten Kemena, Johannes Stökl, Eva Schultner,[...]. Nat Commun 2014
87
8


T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data.
Anna-Sophie Fiston-Lavier, Maite G Barrón, Dmitri A Petrov, Josefa González. Nucleic Acids Res 2015
43
9

Unique transposon landscapes are pervasive across Drosophila melanogaster genomes.
Reazur Rahman, Gung-wei Chirn, Abhay Kanodia, Yuliya A Sytnikova, Björn Brembs, Casey M Bergman, Nelson C Lau. Nucleic Acids Res 2015
56
8

Human genomic deletions mediated by recombination between Alu elements.
Shurjo K Sen, Kyudong Han, Jianxin Wang, Jungnam Lee, Hui Wang, Pauline A Callinan, Matthew Dyer, Richard Cordaux, Ping Liang, Mark A Batzer. Am J Hum Genet 2006
206
8

The Influence of LINE-1 and SINE Retrotransposons on Mammalian Genomes.
Sandra R Richardson, Aurélien J Doucet, Huira C Kopera, John B Moldovan, José Luis Garcia-Perez, John V Moran. Microbiol Spectr 2015
133
8

Segmental duplications and copy-number variation in the human genome.
Andrew J Sharp, Devin P Locke, Sean D McGrath, Ze Cheng, Jeffrey A Bailey, Rhea U Vallente, Lisa M Pertz, Royden A Clark, Stuart Schwartz, Rick Segraves,[...]. Am J Hum Genet 2005
664
8

A common sequence motif associated with recombination hot spots and genome instability in humans.
Simon Myers, Colin Freeman, Adam Auton, Peter Donnelly, Gil McVean. Nat Genet 2008
309
8

The impact of retrotransposons on human genome evolution.
Richard Cordaux, Mark A Batzer. Nat Rev Genet 2009
950
8

Predicting human genes susceptible to genomic instability associated with Alu/Alu-mediated rearrangements.
Xiaofei Song, Christine R Beck, Renqian Du, Ian M Campbell, Zeynep Coban-Akdemir, Shen Gu, Amy M Breman, Pawel Stankiewicz, Grzegorz Ira, Chad A Shaw,[...]. Genome Res 2018
35
11

Massive genomic rearrangement acquired in a single catastrophic event during cancer development.
Philip J Stephens, Chris D Greenman, Beiyuan Fu, Fengtang Yang, Graham R Bignell, Laura J Mudie, Erin D Pleasance, King Wai Lau, David Beare, Lucy A Stebbings,[...]. Cell 2011
6

Complex reorganization and predominant non-homologous repair following chromosomal breakage in karyotypically balanced germline rearrangements and transgenic integration.
Colby Chiang, Jessie C Jacobsen, Carl Ernst, Carrie Hanscom, Adrian Heilbut, Ian Blumenthal, Ryan E Mills, Andrew Kirby, Amelia M Lindgren, Skye R Rudiger,[...]. Nat Genet 2012
170
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.