A citation-based method for searching scientific literature

Sébastien Boutin, Simon Y Graeber, Michael Weitnauer, Jessica Panitz, Mirjam Stahl, Diana Clausznitzer, Lars Kaderali, Gisli Einarsson, Michael M Tunney, J Stuart Elborn, Marcus A Mall, Alexander H Dalpke. PLoS One 2015
Times Cited: 89







List of co-cited articles
757 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Decade-long bacterial community dynamics in cystic fibrosis airways.
Jiangchao Zhao, Patrick D Schloss, Linda M Kalikin, Lisa A Carmody, Bridget K Foster, Joseph F Petrosino, James D Cavalcoli, Donald R VanDevanter, Susan Murray, Jun Z Li,[...]. Proc Natl Acad Sci U S A 2012
378
33

Lung microbiota across age and disease stage in cystic fibrosis.
Bryan Coburn, Pauline W Wang, Julio Diaz Caballero, Shawn T Clark, Vijaya Brahma, Sylva Donaldson, Yu Zhang, Anu Surendra, Yunchen Gong, D Elizabeth Tullis,[...]. Sci Rep 2015
189
30

Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients.
Michael J Cox, Martin Allgaier, Byron Taylor, Marshall S Baek, Yvonne J Huang, Rebecca A Daly, Ulas Karaoz, Gary L Andersen, Ronald Brown, Kei E Fujimura,[...]. PLoS One 2010
292
28

Topographical continuity of bacterial populations in the healthy human respiratory tract.
Emily S Charlson, Kyle Bittinger, Andrew R Haas, Ayannah S Fitzgerald, Ian Frank, Anjana Yadav, Frederic D Bushman, Ronald G Collman. Am J Respir Crit Care Med 2011
585
25

The adult cystic fibrosis airway microbiota is stable over time and infection type, and highly resilient to antibiotic treatment of exacerbations.
Anthony A Fodor, Erich R Klem, Deirdre F Gilpin, J Stuart Elborn, Richard C Boucher, Michael M Tunney, Matthew C Wolfgang. PLoS One 2012
234
25

Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa.
Vanja Klepac-Ceraj, Katherine P Lemon, Thomas R Martin, Martin Allgaier, Steven W Kembel, Alixandra A Knapp, Stephen Lory, Eoin L Brodie, Susan V Lynch, Brendan J M Bohannan,[...]. Environ Microbiol 2010
160
20

Changes in cystic fibrosis airway microbiota at pulmonary exacerbation.
Lisa A Carmody, Jiangchao Zhao, Patrick D Schloss, Joseph F Petrosino, Susan Murray, Vincent B Young, Jun Z Li, John J LiPuma. Ann Am Thorac Soc 2013
133
20

The daily dynamics of cystic fibrosis airway microbiota during clinical stability and at exacerbation.
Lisa A Carmody, Jiangchao Zhao, Linda M Kalikin, William LeBar, Richard H Simon, Arvind Venkataraman, Thomas M Schmidt, Zaid Abdo, Patrick D Schloss, John J LiPuma. Microbiome 2015
85
21

Detection of anaerobic bacteria in high numbers in sputum from patients with cystic fibrosis.
Michael M Tunney, Tyler R Field, Thomas F Moriarty, Sheila Patrick, Gerd Doering, Marianne S Muhlebach, Matthew C Wolfgang, Richard Boucher, Deirdre F Gilpin, Andrew McDowell,[...]. Am J Respir Crit Care Med 2008
314
19

Analysis of the upper respiratory tract microbiotas as the source of the lung and gastric microbiotas in healthy individuals.
Christine M Bassis, John R Erb-Downward, Robert P Dickson, Christine M Freeman, Thomas M Schmidt, Vincent B Young, James M Beck, Jeffrey L Curtis, Gary B Huffnagle. mBio 2015
322
16

Assessment of airway microbiota and inflammation in cystic fibrosis using multiple sampling methods.
Edith T Zemanick, Brandie D Wagner, Charles E Robertson, Mark J Stevens, Stanley J Szefler, Frank J Accurso, Scott D Sagel, J Kirk Harris. Ann Am Thorac Soc 2015
78
19

Development of the Nasopharyngeal Microbiota in Infants with Cystic Fibrosis.
Sabine M P J Prevaes, Karin M de Winter-de Groot, Hettie M Janssens, Wouter A A de Steenhuijsen Piters, Gerdien A Tramper-Stranders, Anne L Wyllie, Raiza Hasrat, Harm A Tiddens, Mireille van Westreenen, Cornelis K van der Ent,[...]. Am J Respir Crit Care Med 2016
66
22

Inflammation and airway microbiota during cystic fibrosis pulmonary exacerbations.
Edith T Zemanick, J Kirk Harris, Brandie D Wagner, Charles E Robertson, Scott D Sagel, Mark J Stevens, Frank J Accurso, Theresa A Laguna. PLoS One 2013
115
15

Spatial Variation in the Healthy Human Lung Microbiome and the Adapted Island Model of Lung Biogeography.
Robert P Dickson, John R Erb-Downward, Christine M Freeman, Lisa McCloskey, James M Beck, Gary B Huffnagle, Jeffrey L Curtis. Ann Am Thorac Soc 2015
199
15

Respiratory microbiota resistance and resilience to pulmonary exacerbation and subsequent antimicrobial intervention.
Leah Cuthbertson, Geraint B Rogers, Alan W Walker, Anna Oliver, Laura E Green, Thomas W V Daniels, Mary P Carroll, Julian Parkhill, Kenneth D Bruce, Christopher J van der Gast. ISME J 2016
65
20

Cystic fibrosis.
J Stuart Elborn. Lancet 2016
653
14

QIIME allows analysis of high-throughput community sequencing data.
J Gregory Caporaso, Justin Kuczynski, Jesse Stombaugh, Kyle Bittinger, Frederic D Bushman, Elizabeth K Costello, Noah Fierer, Antonio Gonzalez Peña, Julia K Goodrich, Jeffrey I Gordon,[...]. Nat Methods 2010
13

Early respiratory microbiota composition determines bacterial succession patterns and respiratory health in children.
Giske Biesbroek, Evgeni Tsivtsivadze, Elisabeth A M Sanders, Roy Montijn, Reinier H Veenhoven, Bart J F Keijser, Debby Bogaert. Am J Respir Crit Care Med 2014
270
13

Airway microbiota across age and disease spectrum in cystic fibrosis.
Edith T Zemanick, Brandie D Wagner, Charles E Robertson, Richard C Ahrens, James F Chmiel, John P Clancy, Ronald L Gibson, William T Harris, Geoffrey Kurland, Theresa A Laguna,[...]. Eur Respir J 2017
94
13

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses.
Susannah J Salter, Michael J Cox, Elena M Turek, Szymon T Calus, William O Cookson, Miriam F Moffatt, Paul Turner, Julian Parkhill, Nicholas J Loman, Alan W Walker. BMC Biol 2014
12

Pyrosequencing reveals transient cystic fibrosis lung microbiome changes with intravenous antibiotics.
Daniel J Smith, Alison C Badrick, Martha Zakrzewski, Lutz Krause, Scott C Bell, Gregory J Anderson, David W Reid. Eur Respir J 2014
57
19

Serial analysis of the gut and respiratory microbiome in cystic fibrosis in infancy: interaction between intestinal and respiratory tracts and impact of nutritional exposures.
J C Madan, D C Koestler, B A Stanton, L Davidson, L A Moulton, M L Housman, J H Moore, M F Guill, H G Morrison, M L Sogin,[...]. mBio 2012
186
12

Associations between Gut Microbial Colonization in Early Life and Respiratory Outcomes in Cystic Fibrosis.
Anne G Hoen, Jing Li, Lisa A Moulton, George A O'Toole, Molly L Housman, Devin C Koestler, Margaret F Guill, Jason H Moore, Patricia L Hibberd, Hilary G Morrison,[...]. J Pediatr 2015
68
16

The nasal microbiota in infants with cystic fibrosis in the first year of life: a prospective cohort study.
Moana Mika, Insa Korten, Weihong Qi, Nicolas Regamey, Urs Frey, Carmen Casaulta, Philipp Latzin, Markus Hilty. Lancet Respir Med 2016
41
26


Impact of the CFTR-potentiator ivacaftor on airway microbiota in cystic fibrosis patients carrying a G551D mutation.
Cédric Bernarde, Marlène Keravec, Jérôme Mounier, Stéphanie Gouriou, Gilles Rault, Claude Férec, Georges Barbier, Geneviève Héry-Arnaud. PLoS One 2015
44
22

The airway microbiota in cystic fibrosis: a complex fungal and bacterial community--implications for therapeutic management.
Laurence Delhaes, Sébastien Monchy, Emilie Fréalle, Christine Hubans, Julia Salleron, Sylvie Leroy, Anne Prevotat, Frédérick Wallet, Benoit Wallaert, Eduardo Dei-Cas,[...]. PLoS One 2012
223
11

Molecular identification of bacteria in bronchoalveolar lavage fluid from children with cystic fibrosis.
J Kirk Harris, Mary Ann De Groote, Scott D Sagel, Edith T Zemanick, Robert Kapsner, Churee Penvari, Heidi Kaess, Robin R Deterding, Frank J Accurso, Norman R Pace. Proc Natl Acad Sci U S A 2007
267
11

Modulation of Pseudomonas aeruginosa gene expression by host microflora through interspecies communication.
Kangmin Duan, Carol Dammel, Jeffrey Stein, Harvey Rabin, Michael G Surette. Mol Microbiol 2003
321
11

The microbial community of the cystic fibrosis airway is disrupted in early life.
Julie Renwick, Paul McNally, Bettina John, Todd DeSantis, Barry Linnane, Philip Murphy. PLoS One 2014
40
25

Pseudomonas aeruginosa and other predictors of mortality and morbidity in young children with cystic fibrosis.
Julia Emerson, Margaret Rosenfeld, Sharon McNamara, Bonnie Ramsey, Ronald L Gibson. Pediatr Pulmonol 2002
681
11

Risk factors for bronchiectasis in children with cystic fibrosis.
Peter D Sly, Catherine L Gangell, Linping Chen, Robert S Ware, Sarath Ranganathan, Lauren S Mott, Conor P Murray, Stephen M Stick. N Engl J Med 2013
342
11

The lower airway microbiota in early cystic fibrosis lung disease: a longitudinal analysis.
Katherine B Frayman, David S Armstrong, Rosemary Carzino, Thomas W Ferkol, Keith Grimwood, Gregory A Storch, Shu Mei Teo, Kristine M Wylie, Sarath C Ranganathan. Thorax 2017
56
17

Concordance between upper and lower airway microbiota in infants with cystic fibrosis.
Sabine M P J Prevaes, Wouter A A de Steenhuijsen Piters, Karin M de Winter-de Groot, Hettie M Janssens, Gerdien A Tramper-Stranders, Mei Ling J N Chu, Harm A Tiddens, Mireille van Westreenen, Cornelis K van der Ent, Elisabeth A M Sanders,[...]. Eur Respir J 2017
33
30

Disordered microbial communities in asthmatic airways.
Markus Hilty, Conor Burke, Helder Pedro, Paul Cardenas, Andy Bush, Cara Bossley, Jane Davies, Aaron Ervine, Len Poulter, Lior Pachter,[...]. PLoS One 2010
920
10

The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography.
Katrine L Whiteson, Barbara Bailey, Megan Bergkessel, Douglas Conrad, Laurence Delhaes, Ben Felts, J Kirk Harris, Ryan Hunter, Yan Wei Lim, Heather Maughan,[...]. Am J Respir Crit Care Med 2014
61
14

Unique microbial communities persist in individual cystic fibrosis patients throughout a clinical exacerbation.
Katherine E Price, Thomas H Hampton, Alex H Gifford, Emily L Dolben, Deborah A Hogan, Hilary G Morrison, Mitchell L Sogin, George A O'Toole. Microbiome 2013
92
10

Characterization and quantification of the fungal microbiome in serial samples from individuals with cystic fibrosis.
Sven D Willger, Sharon L Grim, Emily L Dolben, Anna Shipunova, Thomas H Hampton, Hilary G Morrison, Laura M Filkins, George A O'Toole, Lisa A Moulton, Alix Ashare,[...]. Microbiome 2014
75
12

Comparison of the respiratory microbiome in healthy nonsmokers and smokers.
Alison Morris, James M Beck, Patrick D Schloss, Thomas B Campbell, Kristina Crothers, Jeffrey L Curtis, Sonia C Flores, Andrew P Fontenot, Elodie Ghedin, Laurence Huang,[...]. Am J Respir Crit Care Med 2013
409
10

Early respiratory infection is associated with reduced spirometry in children with cystic fibrosis.
Kathryn A Ramsey, Sarath Ranganathan, Judy Park, Billy Skoric, Anne-Marie Adams, Shannon J Simpson, Roy M Robins-Browne, Peter J Franklin, Nick H de Klerk, Peter D Sly,[...]. Am J Respir Crit Care Med 2014
100
10


Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms.
J Gregory Caporaso, Christian L Lauber, William A Walters, Donna Berg-Lyons, James Huntley, Noah Fierer, Sarah M Owens, Jason Betley, Louise Fraser, Markus Bauer,[...]. ISME J 2012
10

The infant nasopharyngeal microbiome impacts severity of lower respiratory infection and risk of asthma development.
Shu Mei Teo, Danny Mok, Kym Pham, Merci Kusel, Michael Serralha, Niamh Troy, Barbara J Holt, Belinda J Hales, Michael L Walker, Elysia Hollams,[...]. Cell Host Microbe 2015
409
10

CFTR: cystic fibrosis and beyond.
Marcus A Mall, Dominik Hartl. Eur Respir J 2014
120
10

Application of a neutral community model to assess structuring of the human lung microbiome.
Arvind Venkataraman, Christine M Bassis, James M Beck, Vincent B Young, Jeffrey L Curtis, Gary B Huffnagle, Thomas M Schmidt. mBio 2015
185
8

Evaluation of a new definition for chronic Pseudomonas aeruginosa infection in cystic fibrosis patients.
Tim W R Lee, Keith G Brownlee, Steven P Conway, Miles Denton, James M Littlewood. J Cyst Fibros 2003
420
8

Quantitative analysis of the human airway microbial ecology reveals a pervasive signature for cystic fibrosis.
Paul C Blainey, Carlos E Milla, David N Cornfield, Stephen R Quake. Sci Transl Med 2012
78
10

Use of culture and molecular analysis to determine the effect of antibiotic treatment on microbial community diversity and abundance during exacerbation in patients with cystic fibrosis.
M M Tunney, E R Klem, A A Fodor, D F Gilpin, T F Moriarty, S J McGrath, M S Muhlebach, R C Boucher, C Cardwell, G Doering,[...]. Thorax 2011
126
8

Directly sampling the lung of a young child with cystic fibrosis reveals diverse microbiota.
Perry S Brown, Christopher E Pope, Robyn L Marsh, Xuan Qin, Sharon McNamara, Ronald Gibson, Jane L Burns, Gail Deutsch, Lucas R Hoffman. Ann Am Thorac Soc 2014
45
17

Direct sampling of cystic fibrosis lungs indicates that DNA-based analyses of upper-airway specimens can misrepresent lung microbiota.
Amanda F Goddard, Benjamin J Staudinger, Scot E Dowd, Amruta Joshi-Datar, Randall D Wolcott, Moira L Aitken, Corinne L Fligner, Pradeep K Singh. Proc Natl Acad Sci U S A 2012
174
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.