A citation-based method for searching scientific literature

Erik A Feldmann, Katrina N Koc, Roberto Galletto. Biophys Chem 2015
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock.
Peter D Mariner, Ryan D Walters, Celso A Espinoza, Linda F Drullinger, Stacey D Wagner, Jennifer F Kugel, James A Goodrich. Mol Cell 2008
334
50

Protection of antiterminator RNA by the transcript elongation complex.
Sieghild Sloan, Edit Rutkai, Rodney A King, Tatyana Velikodvorskaya, Robert A Weisberg. Mol Microbiol 2007
5
50

ViennaNGS: A toolbox for building efficient next- generation sequencing analysis pipelines.
Michael T Wolfinger, Jörg Fallmann, Florian Eggenhofer, Fabian Amman. F1000Res 2015
26
50


Widespread bidirectional promoters are the major source of cryptic transcripts in yeast.
Helen Neil, Christophe Malabat, Yves d'Aubenton-Carafa, Zhenyu Xu, Lars M Steinmetz, Alain Jacquier. Nature 2009
430
50

RNA quality control in the nucleus: the Angels' share of RNA.
Odil Porrua, Domenico Libri. Biochim Biophys Acta 2013
34
50


Cooperation between the INO80 complex and histone chaperones determines adaptation of stress gene transcription in the yeast Saccharomyces cerevisiae.
Eva Klopf, Ludmila Paskova, Carme Solé, Gloria Mas, Andriy Petryshyn, Francesc Posas, Ulrike Wintersberger, Gustav Ammerer, Christoph Schüller. Mol Cell Biol 2009
45
50


Structure of an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation by noncoding RNAs.
Hubert Kettenberger, Alexander Eisenführ, Florian Brueckner, Mirko Theis, Michael Famulok, Patrick Cramer. Nat Struct Mol Biol 2006
58
50

RNA decay machines: the exosome.
Aleksander Chlebowski, Michał Lubas, Torben Heick Jensen, Andrzej Dziembowski. Biochim Biophys Acta 2013
152
50

Genetic and epigenetic regulation of the FLO gene family generates cell-surface variation in yeast.
Adrian Halme, Stacie Bumgarner, Cora Styles, Gerald R Fink. Cell 2004
247
50

Transcriptional outcome of telomere signalling.
Jing Ye, Valérie M Renault, Karine Jamet, Eric Gilson. Nat Rev Genet 2014
82
50

Transcriptome surveillance by selective termination of noncoding RNA synthesis.
Daniel Schulz, Bjoern Schwalb, Anja Kiesel, Carlo Baejen, Phillipp Torkler, Julien Gagneur, Johannes Soeding, Patrick Cramer. Cell 2013
135
50

Fast mapping of short sequences with mismatches, insertions and deletions using index structures.
Steve Hoffmann, Christian Otto, Stefan Kurtz, Cynthia M Sharma, Philipp Khaitovich, Jörg Vogel, Peter F Stadler, Jörg Hackermüller. PLoS Comput Biol 2009
338
50

B2 RNA represses TFIIH phosphorylation of RNA polymerase II.
Petro Yakovchuk, James A Goodrich, Jennifer F Kugel. Transcription 2011
20
50

Uniform transitions of the general RNA polymerase II transcription complex.
Andreas Mayer, Michael Lidschreiber, Matthias Siebert, Kristin Leike, Johannes Söding, Patrick Cramer. Nat Struct Mol Biol 2010
326
50

Transcription factor trapping by RNA in gene regulatory elements.
Alla A Sigova, Brian J Abraham, Xiong Ji, Benoit Molinie, Nancy M Hannett, Yang Eric Guo, Mohini Jangi, Cosmas C Giallourakis, Phillip A Sharp, Richard A Young. Science 2015
224
50


Clues to long noncoding RNA taxonomy.
Tetsuro Hirose, Shinichi Nakagawa. Biochim Biophys Acta 2016
9
50

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists.
Eran Eden, Roy Navon, Israel Steinfeld, Doron Lipson, Zohar Yakhini. BMC Bioinformatics 2009
50

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
50

Strand-specific, high-resolution mapping of modified RNA polymerase II.
Laura Milligan, Vân A Huynh-Thu, Clémentine Delan-Forino, Alex Tuck, Elisabeth Petfalski, Rodrigo Lombraña, Guido Sanguinetti, Grzegorz Kudla, David Tollervey. Mol Syst Biol 2016
39
50

Enhancer RNA facilitates NELF release from immediate early genes.
Katie Schaukowitch, Jae-Yeol Joo, Xihui Liu, Jonathan K Watts, Carlos Martinez, Tae-Kyung Kim. Mol Cell 2014
227
50

Nascent transcript sequencing visualizes transcription at nucleotide resolution.
L Stirling Churchman, Jonathan S Weissman. Nature 2011
515
50


Breaking barriers to transcription elongation.
Abbie Saunders, Leighton J Core, John T Lis. Nat Rev Mol Cell Biol 2006
373
50

Isolation of small RNA-binding proteins from E. coli: evidence for frequent interaction of RNAs with RNA polymerase.
Nikolai Windbichler, Frederike von Pelchrzim, Oliver Mayer, Edina Csaszar, Renée Schroeder. RNA Biol 2008
35
50



Control of transcriptional elongation.
Hojoong Kwak, John T Lis. Annu Rev Genet 2013
247
50

A movie of RNA polymerase II transcription.
Alan C M Cheung, Patrick Cramer. Cell 2012
77
50

Getting up to speed with transcription elongation by RNA polymerase II.
Iris Jonkers, John T Lis. Nat Rev Mol Cell Biol 2015
424
50

Multiple mechanisms mediate glucose repression of the yeast GAL1 gene.
M S Lamphier, M Ptashne. Proc Natl Acad Sci U S A 1992
46
50

The long non-coding RNA world in yeasts.
Akira Yamashita, Yuichi Shichino, Masayuki Yamamoto. Biochim Biophys Acta 2016
42
50

B2 RNA binds directly to RNA polymerase II to repress transcript synthesis.
Celso A Espinoza, Tiffany A Allen, Aaron R Hieb, Jennifer F Kugel, James A Goodrich. Nat Struct Mol Biol 2004
187
50

The many pathways of RNA degradation.
Jonathan Houseley, David Tollervey. Cell 2009
669
50

The anchor-away technique: rapid, conditional establishment of yeast mutant phenotypes.
Hirohito Haruki, Junichi Nishikawa, Ulrich K Laemmli. Mol Cell 2008
349
50

Unravelling the means to an end: RNA polymerase II transcription termination.
Jason N Kuehner, Erika L Pearson, Claire Moore. Nat Rev Mol Cell Biol 2011
174
50

Disengaging polymerase: terminating RNA polymerase II transcription in budding yeast.
Hannah E Mischo, Nick J Proudfoot. Biochim Biophys Acta 2013
93
50

Hereditary hemorrhagic telangiectasia: genetics and molecular diagnostics in a new era.
Jamie McDonald, Whitney Wooderchak-Donahue, Chad VanSant Webb, Kevin Whitehead, David A Stevenson, Pinar Bayrak-Toydemir. Front Genet 2015
237
50

The SINE-encoded mouse B2 RNA represses mRNA transcription in response to heat shock.
Tiffany A Allen, Sandra Von Kaenel, James A Goodrich, Jennifer F Kugel. Nat Struct Mol Biol 2004
209
50

TERRA: telomeric repeat-containing RNA.
Brian Luke, Joachim Lingner. EMBO J 2009
177
50

Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae.
Arunadevi Yarragudi, Laura Wegener Parfrey, Randall H Morse. Nucleic Acids Res 2007
77
50

Telomere functions grounding on TERRA firma.
Claus M Azzalin, Joachim Lingner. Trends Cell Biol 2015
118
50

6S RNA regulates E. coli RNA polymerase activity.
K M Wassarman, G Storz. Cell 2000
324
50

Selective targeting and inhibition of yeast RNA polymerase II by RNA aptamers.
M Thomas, S Chédin, C Carles, M Riva, M Famulok, A Sentenac. J Biol Chem 1997
61
50

Yeast protein phosphatase 2A-Cdc55 regulates the transcriptional response to hyperosmolarity stress by regulating Msn2 and Msn4 chromatin recruitment.
Wolfgang Reiter, Eva Klopf, Veerle De Wever, Dorothea Anrather, Andriy Petryshyn, Andreas Roetzer, Gerhard Niederacher, Elisabeth Roitinger, Ilse Dohnal, Wolfram Görner,[...]. Mol Cell Biol 2013
19
50

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples.
Günter P Wagner, Koryu Kin, Vincent J Lynch. Theory Biosci 2012
814
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.