A citation-based method for searching scientific literature

Zhi Qi, Sy Redding, Ja Yil Lee, Bryan Gibb, YoungHo Kwon, Hengyao Niu, William A Gaines, Patrick Sung, Eric C Greene. Cell 2015
Times Cited: 123







List of co-cited articles
1056 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


DNA RECOMBINATION. Base triplet stepping by the Rad51/RecA family of recombinases.
Ja Yil Lee, Tsuyoshi Terakawa, Zhi Qi, Justin B Steinfeld, Sy Redding, YoungHo Kwon, William A Gaines, Weixing Zhao, Patrick Sung, Eric C Greene. Science 2015
93
49

Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures.
Zhucheng Chen, Haijuan Yang, Nikola P Pavletich. Nature 2008
457
39

An Overview of the Molecular Mechanisms of Recombinational DNA Repair.
Stephen C Kowalczykowski. Cold Spring Harb Perspect Biol 2015
249
29

Mechanism of eukaryotic homologous recombination.
Joseph San Filippo, Patrick Sung, Hannah Klein. Annu Rev Biochem 2008
24

Mechanisms and regulation of mitotic recombination in Saccharomyces cerevisiae.
Lorraine S Symington, Rodney Rothstein, Michael Lisby. Genetics 2014
217
22

RecA filament sliding on DNA facilitates homology search.
Kaushik Ragunathan, Cheng Liu, Taekjip Ha. Elife 2012
64
32


Cryo-EM structures of human RAD51 recombinase filaments during catalysis of DNA-strand exchange.
Jingfei Xu, Lingyun Zhao, Yuanyuan Xu, Weixing Zhao, Patrick Sung, Hong-Wei Wang. Nat Struct Mol Biol 2017
57
36

Regulation of homologous recombination in eukaryotes.
Wolf-Dietrich Heyer, Kirk T Ehmsen, Jie Liu. Annu Rev Genet 2010
656
17

DNA strand exchange and RecA homologs in meiosis.
M Scott Brown, Douglas K Bishop. Cold Spring Harb Perspect Biol 2014
119
17

Rad51 is an accessory factor for Dmc1-mediated joint molecule formation during meiosis.
Veronica Cloud, Yuen-Ling Chan, Jennifer Grubb, Brian Budke, Douglas K Bishop. Science 2012
175
17

High-resolution structure of the presynaptic RAD51 filament on single-stranded DNA by electron cryo-microscopy.
Judith M Short, Yang Liu, Shaoxia Chen, Neelesh Soni, Mallur S Madhusudhan, Mahmud K K Shivji, Ashok R Venkitaraman. Nucleic Acids Res 2016
52
32

Choreography of the DNA damage response: spatiotemporal relationships among checkpoint and repair proteins.
Michael Lisby, Jacqueline H Barlow, Rebecca C Burgess, Rodney Rothstein. Cell 2004
704
16


Single-Stranded DNA Curtains for Studying Homologous Recombination.
C J Ma, J B Steinfeld, E C Greene. Methods Enzymol 2017
25
64


Crystal structure of a Rad51 filament.
Adam B Conway, Thomas W Lynch, Ying Zhang, Gary S Fortin, Cindy W Fung, Lorraine S Symington, Phoebe A Rice. Nat Struct Mol Biol 2004
225
15

Mechanisms and principles of homology search during recombination.
Jörg Renkawitz, Claudio A Lademann, Stefan Jentsch. Nat Rev Mol Cell Biol 2014
92
16

Structure/function relationships in RecA protein-mediated homology recognition and strand exchange.
Mara Prentiss, Chantal Prévost, Claudia Danilowicz. Crit Rev Biochem Mol Biol 2015
44
34

Meiotic Recombination: The Essence of Heredity.
Neil Hunter. Cold Spring Harb Perspect Biol 2015
356
15

DNA helicase Srs2 disrupts the Rad51 presynaptic filament.
Lumir Krejci, Stephen Van Komen, Ying Li, Jana Villemain, Mothe Sreedhar Reddy, Hannah Klein, Thomas Ellenberger, Patrick Sung. Nature 2003
479
15

The Srs2 helicase prevents recombination by disrupting Rad51 nucleoprotein filaments.
Xavier Veaute, Josette Jeusset, Christine Soustelle, Stephen C Kowalczykowski, Eric Le Cam, Francis Fabre. Nature 2003
465
15


Protein dynamics during presynaptic-complex assembly on individual single-stranded DNA molecules.
Bryan Gibb, Ling F Ye, YoungHo Kwon, Hengyao Niu, Patrick Sung, Eric C Greene. Nat Struct Mol Biol 2014
62
22


Direct observation of individual RecA filaments assembling on single DNA molecules.
Roberto Galletto, Ichiro Amitani, Ronald J Baskin, Stephen C Kowalczykowski. Nature 2006
175
14

The poor homology stringency in the heteroduplex allows strand exchange to incorporate desirable mismatches without sacrificing recognition in vivo.
Claudia Danilowicz, Darren Yang, Craig Kelley, Chantal Prévost, Mara Prentiss. Nucleic Acids Res 2015
21
66





Building up and breaking down: mechanisms controlling recombination during replication.
Dana Branzei, Barnabas Szakal. Crit Rev Biochem Mol Biol 2017
54
24

DNA strand exchange proteins: a biochemical and physical comparison.
P R Bianco, R B Tracy, S C Kowalczykowski. Front Biosci 1998
301
12


DNA curtains for high-throughput single-molecule optical imaging.
Eric C Greene, Shalom Wind, Teresa Fazio, Jason Gorman, Mari-Liis Visnapuu. Methods Enzymol 2010
79
15


Concentration-dependent exchange of replication protein A on single-stranded DNA revealed by single-molecule imaging.
Bryan Gibb, Ling F Ye, Stephanie C Gergoudis, YoungHo Kwon, Hengyao Niu, Patrick Sung, Eric C Greene. PLoS One 2014
109
12

Purified human BRCA2 stimulates RAD51-mediated recombination.
Ryan B Jensen, Aura Carreira, Stephen C Kowalczykowski. Nature 2010
424
12

Hed1 regulates Rad51-mediated recombination via a novel mechanism.
Valeria Busygina, Michael G Sehorn, Idina Y Shi, Hideo Tsubouchi, G Shirleen Roeder, Patrick Sung. Genes Dev 2008
73
16

Srs2 disassembles Rad51 filaments by a protein-protein interaction triggering ATP turnover and dissociation of Rad51 from DNA.
Edwin Antony, Eric J Tomko, Qi Xiao, Lumir Krejci, Timothy M Lohman, Tom Ellenberger. Mol Cell 2009
111
12

RecA: Regulation and Mechanism of a Molecular Search Engine.
Jason C Bell, Stephen C Kowalczykowski. Trends Biochem Sci 2016
104
12


Single-stranded DNA curtains for real-time single-molecule visualization of protein-nucleic acid interactions.
Bryan Gibb, Tim D Silverstein, Ilya J Finkelstein, Eric C Greene. Anal Chem 2012
51
21

Real-time observation of RecA filament dynamics with single monomer resolution.
Chirlmin Joo, Sean A McKinney, Muneaki Nakamura, Ivan Rasnik, Sua Myong, Taekjip Ha. Cell 2006
212
11

Real-time observation of strand exchange reaction with high spatiotemporal resolution.
Kaushik Ragunathan, Chirlmin Joo, Taekjip Ha. Structure 2011
52
21

Domain structure and dynamics in the helical filaments formed by RecA and Rad51 on DNA.
X Yu, S A Jacobs, S C West, T Ogawa, E H Egelman. Proc Natl Acad Sci U S A 2001
190
11

Mechanism of homology recognition in DNA recombination from dual-molecule experiments.
Iwijn De Vlaminck, Marijn T J van Loenhout, Ludovit Zweifel, Johan den Blanken, Koen Hooning, Susanne Hage, Jacob Kerssemakers, Cees Dekker. Mol Cell 2012
63
17

Direct imaging of RecA nucleation and growth on single molecules of SSB-coated ssDNA.
Jason C Bell, Jody L Plank, Christopher C Dombrowski, Stephen C Kowalczykowski. Nature 2012
103
11

Integrating multi-scale data on homologous recombination into a new recognition mechanism based on simulations of the RecA-ssDNA/dsDNA structure.
Darren Yang, Benjamin Boyer, Chantal Prévost, Claudia Danilowicz, Mara Prentiss. Nucleic Acids Res 2015
33
33

Sources of DNA double-strand breaks and models of recombinational DNA repair.
Anuja Mehta, James E Haber. Cold Spring Harb Perspect Biol 2014
383
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.