A citation-based method for searching scientific literature

Lu Chen, Weichen Zhou, Ling Zhang, Feng Zhang. Genomics Inform 2014
Times Cited: 13







List of co-cited articles
47 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The influence of CCL3L1 gene-containing segmental duplications on HIV-1/AIDS susceptibility.
Enrique Gonzalez, Hemant Kulkarni, Hector Bolivar, Andrea Mangano, Racquel Sanchez, Gabriel Catano, Robert J Nibbs, Barry I Freedman, Marlon P Quinones, Michael J Bamshad,[...]. Science 2005
842
23

Structural variation in the human genome.
Lars Feuk, Andrew R Carson, Stephen W Scherer. Nat Rev Genet 2006
23

Large-scale copy number polymorphism in the human genome.
Jonathan Sebat, B Lakshmi, Jennifer Troge, Joan Alexander, Janet Young, Pär Lundin, Susanne Månér, Hillary Massa, Megan Walker, Maoyen Chi,[...]. Science 2004
23

Alu-mediated diverse and complex pathogenic copy-number variants within human chromosome 17 at p13.3.
Shen Gu, Bo Yuan, Ian M Campbell, Christine R Beck, Claudia M B Carvalho, Sandesh C S Nagamani, Ayelet Erez, Ankita Patel, Carlos A Bacino, Chad A Shaw,[...]. Hum Mol Genet 2015
55
23

Initial sequencing and analysis of the human genome.
E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh,[...]. Nature 2001
23

A copy number variation map of the human genome.
Mehdi Zarrei, Jeffrey R MacDonald, Daniele Merico, Stephen W Scherer. Nat Rev Genet 2015
383
23

Origins and functional impact of copy number variation in the human genome.
Donald F Conrad, Dalila Pinto, Richard Redon, Lars Feuk, Omer Gokcumen, Yujun Zhang, Jan Aerts, T Daniel Andrews, Chris Barnes, Peter Campbell,[...]. Nature 2010
23

Mechanisms of change in gene copy number.
P J Hastings, James R Lupski, Susan M Rosenberg, Grzegorz Ira. Nat Rev Genet 2009
731
23

CCL3L1 gene-containing segmental duplications and polymorphisms in CCR5 affect risk of systemic lupus erythaematosus.
M Mamtani, B Rovin, R Brey, J F Camargo, H Kulkarni, M Herrera, P Correa, S Holliday, J-M Anaya, S K Ahuja. Ann Rheum Dis 2008
73
15

Copy number polymorphism in Fcgr3 predisposes to glomerulonephritis in rats and humans.
Timothy J Aitman, Rong Dong, Timothy J Vyse, Penny J Norsworthy, Michelle D Johnson, Jennifer Smith, Jonathan Mangion, Cheri Roberton-Lowe, Amy J Marshall, Enrico Petretto,[...]. Nature 2006
520
15

Detection of large-scale variation in the human genome.
A John Iafrate, Lars Feuk, Miguel N Rivera, Marc L Listewnik, Patricia K Donahoe, Ying Qi, Stephen W Scherer, Charles Lee. Nat Genet 2004
15


Deletion polymorphism upstream of IRGM associated with altered IRGM expression and Crohn's disease.
Steven A McCarroll, Alan Huett, Petric Kuballa, Shannon D Chilewski, Aimee Landry, Philippe Goyette, Michael C Zody, Jennifer L Hall, Steven R Brant, Judy H Cho,[...]. Nat Genet 2008
490
15

A chromosome 8 gene-cluster polymorphism with low human beta-defensin 2 gene copy number predisposes to Crohn disease of the colon.
Klaus Fellermann, Daniel E Stange, Elke Schaeffeler, Hartmut Schmalzl, Jan Wehkamp, Charles L Bevins, Walter Reinisch, Alexander Teml, Matthias Schwab, Peter Lichter,[...]. Am J Hum Genet 2006
387
15


DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources.
Helen V Firth, Shola M Richards, A Paul Bevan, Stephen Clayton, Manuel Corpas, Diana Rajan, Steven Van Vooren, Yves Moreau, Roger M Pettett, Nigel P Carter. Am J Hum Genet 2009
972
15

Mechanisms for human genomic rearrangements.
Wenli Gu, Feng Zhang, James R Lupski. Pathogenetics 2008
380
15

Mechanisms underlying structural variant formation in genomic disorders.
Claudia M B Carvalho, James R Lupski. Nat Rev Genet 2016
276
15

Population analysis of large copy number variants and hotspots of human genetic disease.
Andy Itsara, Gregory M Cooper, Carl Baker, Santhosh Girirajan, Jun Li, Devin Absher, Ronald M Krauss, Richard M Myers, Paul M Ridker, Daniel I Chasman,[...]. Am J Hum Genet 2009
420
15


Large homozygous deletions of the 2q13 region are a major cause of juvenile nephronophthisis.
M Konrad, S Saunier, L Heidet, F Silbermann, F Benessy, J Calado, D Le Paslier, M Broyer, M C Gubler, C Antignac. Hum Mol Genet 1996
117
15

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
15


DNA duplication associated with Charcot-Marie-Tooth disease type 1A.
J R Lupski, R M de Oca-Luna, S Slaugenhaupt, L Pentao, V Guzzetta, B J Trask, O Saucedo-Cardenas, D F Barker, J M Killian, C A Garcia,[...]. Cell 1991
15

Copy number variation: new insights in genome diversity.
Jennifer L Freeman, George H Perry, Lars Feuk, Richard Redon, Steven A McCarroll, David M Altshuler, Hiroyuki Aburatani, Keith W Jones, Chris Tyler-Smith, Matthew E Hurles,[...]. Genome Res 2006
495
15

The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
15

Massive genomic rearrangement acquired in a single catastrophic event during cancer development.
Philip J Stephens, Chris D Greenman, Beiyuan Fu, Fengtang Yang, Graham R Bignell, Laura J Mudie, Erin D Pleasance, King Wai Lau, David Beare, Lucy A Stebbings,[...]. Cell 2011
15

Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus.
David Gresham, Renata Usaite, Susanne Manuela Germann, Michael Lisby, David Botstein, Birgitte Regenberg. Proc Natl Acad Sci U S A 2010
64
15

Structural Variation of Alu Element and Human Disease.
Songmi Kim, Chun-Sung Cho, Kyudong Han, Jungnam Lee. Genomics Inform 2016
40
15

Single-cell copy number variant detection reveals the dynamics and diversity of adaptation.
Stephanie Lauer, Grace Avecilla, Pieter Spealman, Gunjan Sethia, Nathan Brandt, Sasha F Levy, David Gresham. PLoS Biol 2018
31
15

Origin-Dependent Inverted-Repeat Amplification: Tests of a Model for Inverted DNA Amplification.
Bonita J Brewer, Celia Payen, Sara C Di Rienzi, Megan M Higgins, Giang Ong, Maitreya J Dunham, M K Raghuraman. PLoS Genet 2015
20
15

Global variation in copy number in the human genome.
Richard Redon, Shumpei Ishikawa, Karen R Fitch, Lars Feuk, George H Perry, T Daniel Andrews, Heike Fiegler, Michael H Shapero, Andrew R Carson, Wenwei Chen,[...]. Nature 2006
15

Copy number variation in the genomes of domestic animals.
A Clop, O Vidal, M Amills. Anim Genet 2012
77
15


Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions.
Darío G Lupiáñez, Katerina Kraft, Verena Heinrich, Peter Krawitz, Francesco Brancati, Eva Klopocki, Denise Horn, Hülya Kayserili, John M Opitz, Renata Laxova,[...]. Cell 2015
942
15

Extensive strain-level copy-number variation across human gut microbiome species.
Sharon Greenblum, Rogan Carr, Elhanan Borenstein. Cell 2015
131
15

Environmental change drives accelerated adaptation through stimulated copy number variation.
Ryan M Hull, Cristina Cruz, Carmen V Jack, Jonathan Houseley. PLoS Biol 2017
45
15

Copy number variants are produced in response to low-dose ionizing radiation in cultured cells.
Martin F Arlt, Sountharia Rajendran, Shanda R Birkeland, Thomas E Wilson, Thomas W Glover. Environ Mol Mutagen 2014
30
15

Origin-dependent inverted-repeat amplification: a replication-based model for generating palindromic amplicons.
Bonita J Brewer, Celia Payen, M K Raghuraman, Maitreya J Dunham. PLoS Genet 2011
34
15

Segmental copy number variation shapes tissue transcriptomes.
Charlotte N Henrichsen, Nicolas Vinckenbosch, Sebastian Zöllner, Evelyne Chaignat, Sylvain Pradervand, Frédéric Schütz, Manuel Ruedi, Henrik Kaessmann, Alexandre Reymond. Nat Genet 2009
226
15

The dynamics of diverse segmental amplifications in populations of Saccharomyces cerevisiae adapting to strong selection.
Celia Payen, Sara C Di Rienzi, Giang T Ong, Jamie L Pogachar, Joseph C Sanchez, Anna B Sunshine, M K Raghuraman, Bonita J Brewer, Maitreya J Dunham. G3 (Bethesda) 2014
42
15

THE BAR "GENE" A DUPLICATION.
C B Bridges. Science 1936
200
15


Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
15

Genome structural variation discovery and genotyping.
Can Alkan, Bradley P Coe, Evan E Eichler. Nat Rev Genet 2011
759
15

The Database of Genomic Variants: a curated collection of structural variation in the human genome.
Jeffrey R MacDonald, Robert Ziman, Ryan K C Yuen, Lars Feuk, Stephen W Scherer. Nucleic Acids Res 2014
655
15

Genome architecture, rearrangements and genomic disorders.
Paweł Stankiewicz, James R Lupski. Trends Genet 2002
627
15

Completing the map of human genetic variation.
Evan E Eichler, Deborah A Nickerson, David Altshuler, Anne M Bowcock, Lisa D Brooks, Nigel P Carter, Deanna M Church, Adam Felsenfeld, Mark Guyer, Charles Lee,[...]. Nature 2007
130
7


Human IRGM induces autophagy to eliminate intracellular mycobacteria.
Sudha B Singh, Alexander S Davis, Gregory A Taylor, Vojo Deretic. Science 2006
675
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.