A citation-based method for searching scientific literature

Ryo Futahashi, Ryouka Kawahara-Miki, Michiyo Kinoshita, Kazutoshi Yoshitake, Shunsuke Yajima, Kentaro Arikawa, Takema Fukatsu. Proc Natl Acad Sci U S A 2015
Times Cited: 88







List of co-cited articles
746 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The evolution of color vision in insects.
A D Briscoe, L Chittka. Annu Rev Entomol 2001
567
34

The Dynamic Evolutionary History of Pancrustacean Eyes and Opsins.
Miriam J Henze, Todd H Oakley. Integr Comp Biol 2015
53
37

Phylogenomics resolves the timing and pattern of insect evolution.
Bernhard Misof, Shanlin Liu, Karen Meusemann, Ralph S Peters, Alexander Donath, Christoph Mayer, Paul B Frandsen, Jessica Ware, Tomáš Flouri, Rolf G Beutel,[...]. Science 2014
21

Shedding new light on opsin evolution.
Megan L Porter, Joseph R Blasic, Michael J Bok, Evan G Cameron, Thomas Pringle, Thomas W Cronin, Phyllis R Robinson. Proc Biol Sci 2012
160
20

The ecoresponsive genome of Daphnia pulex.
John K Colbourne, Michael E Pfrender, Donald Gilbert, W Kelley Thomas, Abraham Tucker, Todd H Oakley, Shinichi Tokishita, Andrea Aerts, Georg J Arnold, Malay Kumar Basu,[...]. Science 2011
780
19

The opsins.
Akihisa Terakita. Genome Biol 2005
325
18

Opsin evolution and expression in arthropod compound eyes and ocelli: insights from the cricket Gryllus bimaculatus.
Miriam J Henze, Kara Dannenhauer, Martin Kohler, Thomas Labhart, Matthias Gesemann. BMC Evol Biol 2012
42
35


Full-length transcriptome assembly from RNA-Seq data without a reference genome.
Manfred G Grabherr, Brian J Haas, Moran Yassour, Joshua Z Levin, Dawn A Thompson, Ido Amit, Xian Adiconis, Lin Fan, Raktima Raychowdhury, Qiandong Zeng,[...]. Nat Biotechnol 2011
15

Conservation, Duplication, and Divergence of Five Opsin Genes in Insect Evolution.
Roberto Feuda, Ferdinand Marlétaz, Michael A Bentley, Peter W H Holland. Genome Biol Evol 2016
36
38

Color discrimination with broadband photoreceptors.
Christopher Schnaitmann, Christian Garbers, Thomas Wachtler, Hiromu Tanimoto. Curr Biol 2013
84
15

Pteropsin: a vertebrate-like non-visual opsin expressed in the honey bee brain.
Rodrigo A Velarde, Colin D Sauer, Kimberly K O Walden, Susan E Fahrbach, Hugh M Robertson. Insect Biochem Mol Biol 2005
92
14

Gene duplication is an evolutionary mechanism for expanding spectral diversity in the long-wavelength photopigments of butterflies.
Francesca D Frentiu, Gary D Bernard, Marilou P Sison-Mangus, Andrew Van Zandt Brower, Adriana D Briscoe. Mol Biol Evol 2007
44
29


A cure for the blues: opsin duplication and subfunctionalization for short-wavelength sensitivity in jewel beetles (Coleoptera: Buprestidae).
Nathan P Lord, Rebecca L Plimpton, Camilla R Sharkey, Anton Suvorov, Jonathan P Lelito, Barry M Willardson, Seth M Bybee. BMC Evol Biol 2016
22
54

The evolution of complexity in the visual systems of stomatopods: insights from transcriptomics.
Megan L Porter, Daniel I Speiser, Alexander K Zaharoff, Roy L Caldwell, Thomas W Cronin, Todd H Oakley. Integr Comp Biol 2013
27
40


IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
Lam-Tung Nguyen, Heiko A Schmidt, Arndt von Haeseler, Bui Quang Minh. Mol Biol Evol 2015
12

Molecular diversity of visual pigments in Stomatopoda (Crustacea).
Megan L Porter, Michael J Bok, Phyllis R Robinson, Thomas W Cronin. Vis Neurosci 2009
40
25


Evolution of opsins and phototransduction.
Yoshinori Shichida, Take Matsuyama. Philos Trans R Soc Lond B Biol Sci 2009
216
11

Metazoan opsin evolution reveals a simple route to animal vision.
Roberto Feuda, Sinead C Hamilton, James O McInerney, Davide Pisani. Proc Natl Acad Sci U S A 2012
105
11

De novo transcriptome of Ischnura elegans provides insights into sensory biology, colour and vision genes.
Pallavi Chauhan, Bengt Hansson, Ken Kraaijeveld, Peter de Knijff, Erik I Svensson, Maren Wellenreuther. BMC Genomics 2014
35
28

Opsins have evolved under the permanent heterozygote model: insights from phylotranscriptomics of Odonata.
Anton Suvorov, Nicholas O Jensen, Camilla R Sharkey, M Stanley Fujimoto, Paul Bodily, Haley M Cahill Wightman, T Heath Ogden, Mark J Clement, Seth M Bybee. Mol Ecol 2017
16
62


Evolution and expression plasticity of opsin genes in a fig pollinator, Ceratosolen solmsi.
Bo Wang, Jin-Hua Xiao, Sheng-Nan Bian, Li-Ming Niu, Robert W Murphy, Da-Wei Huang. PLoS One 2013
18
50

Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.
Daniel I Speiser, M Sabrina Pankey, Alexander K Zaharoff, Barbara A Battelle, Heather D Bracken-Grissom, Jesse W Breinholt, Seth M Bybee, Thomas W Cronin, Anders Garm, Annie R Lindgren,[...]. BMC Bioinformatics 2014
43
20


Positive selection of a duplicated UV-sensitive visual pigment coincides with wing pigment evolution in Heliconius butterflies.
Adriana D Briscoe, Seth M Bybee, Gary D Bernard, Furong Yuan, Marilou P Sison-Mangus, Robert D Reed, Andrew D Warren, Jorge Llorente-Bousquets, Chuan-Chin Chiao. Proc Natl Acad Sci U S A 2010
88
10

Tetrachromacy in a butterfly that has eight varieties of spectral receptors.
Hisaharu Koshitaka, Michiyo Kinoshita, Misha Vorobyev, Kentaro Arikawa. Proc Biol Sci 2008
96
10

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.
Sudhir Kumar, Glen Stecher, Koichiro Tamura. Mol Biol Evol 2016
10

Animal colour vision--behavioural tests and physiological concepts.
Almut Kelber, Misha Vorobyev, Daniel Osorio. Biol Rev Camb Philos Soc 2003
384
10

Overcoming the loss of blue sensitivity through opsin duplication in the largest animal group, beetles.
Camilla R Sharkey, M Stanley Fujimoto, Nathan P Lord, Seunggwan Shin, Duane D McKenna, Anton Suvorov, Gavin J Martin, Seth M Bybee. Sci Rep 2017
49
18




Opsin transcripts of predatory diving beetles: a comparison of surface and subterranean photic niches.
Simon M Tierney, Steven J B Cooper, Kathleen M Saint, Terry Bertozzi, Josephine Hyde, William F Humphreys, Andrew D Austin. R Soc Open Sci 2015
21
38



BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
Felipe A Simão, Robert M Waterhouse, Panagiotis Ioannidis, Evgenia V Kriventseva, Evgeny M Zdobnov. Bioinformatics 2015
9

BLAST+: architecture and applications.
Christiam Camacho, George Coulouris, Vahram Avagyan, Ning Ma, Jason Papadopoulos, Kevin Bealer, Thomas L Madden. BMC Bioinformatics 2009
9

The Last Common Ancestor of Most Bilaterian Animals Possessed at Least Nine Opsins.
M Desmond Ramirez, Autum N Pairett, M Sabrina Pankey, Jeanne M Serb, Daniel I Speiser, Andrew J Swafford, Todd H Oakley. Genome Biol Evol 2016
63
12


Coexpression of three middle wavelength-absorbing visual pigments in sexually dimorphic photoreceptors of the butterfly Colias erate.
Yuri Ogawa, Hiroko Awata, Motohiro Wakakuwa, Michiyo Kinoshita, Doekele G Stavenga, Kentaro Arikawa. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2012
22
31

Spectral organization of the eye of a butterfly, Papilio.
K Arikawa. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2003
87
8

Molecular characterization of visual pigments in Branchiopoda and the evolution of opsins in Arthropoda.
Kazuyuki Kashiyama, Takaharu Seki, Hideharu Numata, Shin G Goto. Mol Biol Evol 2009
24
29

Characterisation and localisation of the opsin protein repertoire in the brain and retinas of a spider and an onychophoran.
Bo Joakim Eriksson, David Fredman, Gerhard Steiner, Axel Schmid. BMC Evol Biol 2013
35
20

Molecular evolution of arthropod color vision deduced from multiple opsin genes of jumping spiders.
Mitsumasa Koyanagi, Takashi Nagata, Kazutaka Katoh, Shigeki Yamashita, Fumio Tokunaga. J Mol Evol 2008
36
19

Molecular characterization of crustacean visual pigments and the evolution of pancrustacean opsins.
Megan L Porter, Thomas W Cronin, David A McClellan, Keith A Crandall. Mol Biol Evol 2007
54
12

Crystal structure of squid rhodopsin.
Midori Murakami, Tsutomu Kouyama. Nature 2008
367
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.