A citation-based method for searching scientific literature

Yuichi Ichikawa, Yoshifumi Nishimura, Hitoshi Kurumizaka, Mitsuhiro Shimizu. Biomol Concepts 2015
Times Cited: 8







List of co-cited articles
89 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The epigenetic regulation of mammalian telomeres.
María A Blasco. Nat Rev Genet 2007
466
62

Reduced histone biosynthesis and chromatin changes arising from a damage signal at telomeres.
Roderick J O'Sullivan, Stefan Kubicek, Stuart L Schreiber, Jan Karlseder. Nat Struct Mol Biol 2010
254
62

Epigenetic features of human telomeres.
María D Cubiles, Sonia Barroso, María I Vaquero-Sedas, Alicia Enguix, Andrés Aguilera, Miguel A Vega-Palas. Nucleic Acids Res 2018
43
62

Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends.
Claus M Azzalin, Patrick Reichenbach, Lela Khoriauli, Elena Giulotto, Joachim Lingner. Science 2007
822
50

Determination of enriched histone modifications in non-genic portions of the human genome.
Jeffrey A Rosenfeld, Zhibin Wang, Dustin E Schones, Keji Zhao, Rob DeSalle, Michael Q Zhang. BMC Genomics 2009
143
50

TERRA RNA binding to TRF2 facilitates heterochromatin formation and ORC recruitment at telomeres.
Zhong Deng, Julie Norseen, Andreas Wiedmer, Harold Riethman, Paul M Lieberman. Mol Cell 2009
350
50

Telomere position effect in human cells.
J A Baur, Y Zou, J W Shay, W E Wright. Science 2001
322
50

Arabidopsis thaliana telomeres exhibit euchromatic features.
María I Vaquero-Sedas, Francisco M Gámez-Arjona, Miguel A Vega-Palas. Nucleic Acids Res 2011
36
50

Position effect at S. cerevisiae telomeres: reversible repression of Pol II transcription.
D E Gottschling, O M Aparicio, B L Billington, V A Zakian. Cell 1990
37

On the chromatin structure of eukaryotic telomeres.
María I Vaquero-Sedas, Miguel A Vega-Palas. Epigenetics 2011
11
37

Telomere length regulates TERRA levels through increased trimethylation of telomeric H3K9 and HP1α.
Nausica Arnoult, Amandine Van Beneden, Anabelle Decottignies. Nat Struct Mol Biol 2012
154
37


Unusual chromatin in human telomeres.
H Tommerup, A Dousmanis, T de Lange. Mol Cell Biol 1994
177
37

Telomerase activity is associated with an increase in DNA methylation at the proximal subtelomere and a reduction in telomeric transcription.
Laura J Ng, Jennifer E Cropley, Hilda A Pickett, Roger R Reddel, Catherine M Suter. Nucleic Acids Res 2009
102
37

Mapping and analysis of chromatin state dynamics in nine human cell types.
Jason Ernst, Pouya Kheradpour, Tarjei S Mikkelsen, Noam Shoresh, Lucas D Ward, Charles B Epstein, Xiaolan Zhang, Li Wang, Robbyn Issner, Michael Coyne,[...]. Nature 2011
37

Distribution of non-telomeric sites of the (TTAGGG)n telomeric sequence in vertebrate chromosomes.
J Meyne, R J Baker, H H Hobart, T C Hsu, O A Ryder, O G Ward, J E Wiley, D H Wurster-Hill, T L Yates, R K Moyzis. Chromosoma 1990
476
37

siRNA-mediated methylation of Arabidopsis telomeres.
Jan Vrbsky, Svetlana Akimcheva, J Matthew Watson, Thomas L Turner, Lucia Daxinger, Boris Vyskot, Werner Aufsatz, Karel Riha. PLoS Genet 2010
91
37

Novel features of telomere biology revealed by the absence of telomeric DNA methylation.
Alejandro Vega-Vaquero, Giancarlo Bonora, Marco Morselli, María I Vaquero-Sedas, Liudmilla Rubbi, Matteo Pellegrini, Miguel A Vega-Palas. Genome Res 2016
12
37

SIRT6 is a histone H3 lysine 9 deacetylase that modulates telomeric chromatin.
Eriko Michishita, Ronald A McCord, Elisabeth Berber, Mitomu Kioi, Hesed Padilla-Nash, Mara Damian, Peggie Cheung, Rika Kusumoto, Tiara L A Kawahara, J Carl Barrett,[...]. Nature 2008
699
37

Chromatin structure in telomere dynamics.
Alessandra Galati, Emanuela Micheli, Stefano Cacchione. Front Oncol 2013
46
37

Analysis of the epigenetic status of telomeres by using ChIP-seq data.
María I Vaquero-Sedas, Chongyuan Luo, Miguel A Vega-Palas. Nucleic Acids Res 2012
29
37

The Rat1p 5' to 3' exonuclease degrades telomeric repeat-containing RNA and promotes telomere elongation in Saccharomyces cerevisiae.
Brian Luke, Andrea Panza, Sophie Redon, Nahid Iglesias, Zhijian Li, Joachim Lingner. Mol Cell 2008
207
37

Subtelomeric repetitive elements determine TERRA regulation by Rap1/Rif and Rap1/Sir complexes in yeast.
Nahid Iglesias, Sophie Redon, Verena Pfeiffer, Martina Dees, Joachim Lingner, Brian Luke. EMBO Rep 2011
69
37

TERRA recruitment of polycomb to telomeres is essential for histone trymethylation marks at telomeric heterochromatin.
Juan J Montero, Isabel López-Silanes, Diego Megías, Mario F Fraga, Álvaro Castells-García, Maria A Blasco. Nat Commun 2018
56
37

Telomeres in ICF syndrome cells are vulnerable to DNA damage due to elevated DNA:RNA hybrids.
Shira Sagie, Shir Toubiana, Stella R Hartono, Hagar Katzir, Aya Tzur-Gilat, Shany Havazelet, Claire Francastel, Guillaume Velasco, Frédéric Chédin, Sara Selig. Nat Commun 2017
54
25

Aging stem cells. A Werner syndrome stem cell model unveils heterochromatin alterations as a driver of human aging.
Weiqi Zhang, Jingyi Li, Keiichiro Suzuki, Jing Qu, Ping Wang, Junzhi Zhou, Xiaomeng Liu, Ruotong Ren, Xiuling Xu, Alejandro Ocampo,[...]. Science 2015
265
25

Assembly of telomeric chromatin to create ALTernative endings.
Roderick J O'Sullivan, Genevieve Almouzni. Trends Cell Biol 2014
37
25

On the organization of the nucleosomes associated with telomeric sequences.
Francisco M Gámez-Arjona, Carmen López-López, María I Vaquero-Sedas, Miguel A Vega-Palas. Biochim Biophys Acta 2010
15
25

Nucleosomal organization of telomere-specific chromatin in rat.
V L Makarov, S Lejnine, J Bedoyan, J P Langmore. Cell 1993
142
25

Mammalian ChlR1 has a role in heterochromatin organization.
Akira Inoue, Judith Hyle, Mark S Lechner, Jill M Lahti. Exp Cell Res 2011
19
25


Identification of chromatin marks at TERRA promoter and encoding region.
Yutaka Negishi, Hideya Kawaji, Aki Minoda, Kengo Usui. Biochem Biophys Res Commun 2015
14
25

The forkhead transcription factor FoxI1 remains bound to condensed mitotic chromosomes and stably remodels chromatin structure.
Jizhou Yan, Lisha Xu, Gregory Crawford, Zenfeng Wang, Shawn M Burgess. Mol Cell Biol 2006
65
25

MLL associates with telomeres and regulates telomeric repeat-containing RNA transcription.
Corrado Caslini, James A Connelly, Amparo Serna, Dominique Broccoli, Jay L Hess. Mol Cell Biol 2009
90
25

Variant repeats are interspersed throughout the telomeres and recruit nuclear receptors in ALT cells.
Dimitri Conomos, Michael D Stutz, Mark Hills, Axel A Neumann, Tracy M Bryan, Roger R Reddel, Hilda A Pickett. J Cell Biol 2012
80
25

Telomeres and telomerase: the means to the end (Nobel lecture).
Elizabeth H Blackburn. Angew Chem Int Ed Engl 2010
138
25

Hypomethylation of subtelomeric regions in ICF syndrome is associated with abnormally short telomeres and enhanced transcription from telomeric regions.
Shiran Yehezkel, Yardena Segev, Evani Viegas-Péquignot, Karl Skorecki, Sara Selig. Hum Mol Genet 2008
158
25

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
25

A role for CTCF and cohesin in subtelomere chromatin organization, TERRA transcription, and telomere end protection.
Zhong Deng, Zhuo Wang, Nick Stong, Robert Plasschaert, Aliah Moczan, Horng-Shen Chen, Sufeng Hu, Priyankara Wikramasinghe, Ramana V Davuluri, Marisa S Bartolomei,[...]. EMBO J 2012
105
25

Alternative Lengthening of Telomeres is characterized by reduced compaction of telomeric chromatin.
Harikleia Episkopou, Irena Draskovic, Amandine Van Beneden, Gaëlle Tilman, Marina Mattiussi, Matthieu Gobin, Nausica Arnoult, Arturo Londoño-Vallejo, Anabelle Decottignies. Nucleic Acids Res 2014
100
25

Telomerase-mediated telomere elongation from human blastocysts to embryonic stem cells.
Sicong Zeng, Lvjun Liu, Yi Sun, Pingyuan Xie, Liang Hu, Ding Yuan, Dehua Chen, Qi Ouyang, Ge Lin, Guangxiu Lu. J Cell Sci 2014
31
25

Shelterin Protects Chromosome Ends by Compacting Telomeric Chromatin.
Jigar N Bandaria, Peiwu Qin, Veysel Berk, Steven Chu, Ahmet Yildiz. Cell 2016
90
25



How shelterin protects mammalian telomeres.
Wilhelm Palm, Titia de Lange. Annu Rev Genet 2008
25

SIRT6 is required for maintenance of telomere position effect in human cells.
Ruth I Tennen, Dennis J Bua, Woodring E Wright, Katrin F Chua. Nat Commun 2011
84
25


Replication timing of human telomeres is chromosome arm-specific, influenced by subtelomeric structures and connected to nuclear localization.
Nausica Arnoult, Caroline Schluth-Bolard, Anne Letessier, Irena Drascovic, Rachida Bouarich-Bourimi, Judith Campisi, Sahn-Ho Kim, Amina Boussouar, Alexandre Ottaviani, Frédérique Magdinier,[...]. PLoS Genet 2010
70
25

Telomere length regulates the epigenetic status of mammalian telomeres and subtelomeres.
Roberta Benetti, Marta García-Cao, María A Blasco. Nat Genet 2007
247
25

Human telomeric position effect is determined by chromosomal context and telomeric chromatin integrity.
Catherine Elaine Koering, Alessandra Pollice, Maria Pia Zibella, Serge Bauwens, Alain Puisieux, Michele Brunori, Christine Brun, Luis Martins, Laure Sabatier, John F Pulitzer,[...]. EMBO Rep 2002
127
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.