A citation-based method for searching scientific literature

Maria E Morales, Travis B White, Vincent A Streva, Cecily B DeFreece, Dale J Hedges, Prescott L Deininger. PLoS Genet 2015
Times Cited: 40







List of co-cited articles
387 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Initial sequencing and analysis of the human genome.
E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh,[...]. Nature 2001
37

Regulation of Single-Strand Annealing and its Role in Genome Maintenance.
Ragini Bhargava, David O Onyango, Jeremy M Stark. Trends Genet 2016
194
35

Heteroduplex rejection during single-strand annealing requires Sgs1 helicase and mismatch repair proteins Msh2 and Msh6 but not Pms1.
Neal Sugawara, Tamara Goldfarb, Barbara Studamire, Eric Alani, James E Haber. Proc Natl Acad Sci U S A 2004
146
30

Genetic steps of mammalian homologous repair with distinct mutagenic consequences.
Jeremy M Stark, Andrew J Pierce, Jin Oh, Albert Pastink, Maria Jasin. Mol Cell Biol 2004
337
27

Chromosomal translocation mechanisms at intronic alu elements in mammalian cells.
Beth Elliott, Christine Richardson, Maria Jasin. Mol Cell 2005
123
25

Alu repeats and human genomic diversity.
Mark A Batzer, Prescott L Deininger. Nat Rev Genet 2002
927
22

Alternative-NHEJ is a mechanistically distinct pathway of mammalian chromosome break repair.
Nicole Bennardo, Anita Cheng, Nick Huang, Jeremy M Stark. PLoS Genet 2008
535
20

All y'all need to know 'bout retroelements in cancer.
Victoria P Belancio, Astrid M Roy-Engel, Prescott L Deininger. Semin Cancer Biol 2010
114
20

Mammalian RAD52 Functions in Break-Induced Replication Repair of Collapsed DNA Replication Forks.
Sotirios K Sotiriou, Irene Kamileri, Natalia Lugli, Konstantinos Evangelou, Caterina Da-Ré, Florian Huber, Laura Padayachy, Sebastien Tardy, Noemie L Nicati, Samia Barriot,[...]. Mol Cell 2016
159
20

Alu elements: know the SINEs.
Prescott Deininger. Genome Biol 2011
285
17

Double-strand break end resection and repair pathway choice.
Lorraine S Symington, Jean Gautier. Annu Rev Genet 2011
900
17

The role of Alu repeat clusters as mediators of recurrent chromosomal aberrations in tumors.
Elena Kolomietz, M Stephen Meyn, Ajay Pandita, Jeremy A Squire. Genes Chromosomes Cancer 2002
196
17


RAD52 Facilitates Mitotic DNA Synthesis Following Replication Stress.
Rahul Bhowmick, Sheroy Minocherhomji, Ian D Hickson. Mol Cell 2016
184
17



Alu repeats and human disease.
P L Deininger, M A Batzer. Mol Genet Metab 1999
631
15


Alu elements and DNA double-strand break repair.
Travis B White, Maria E Morales, Prescott L Deininger. Mob Genet Elements 2015
13
46


Genome engineering using the CRISPR-Cas9 system.
F Ann Ran, Patrick D Hsu, Jason Wright, Vineeta Agarwala, David A Scott, Feng Zhang. Nat Protoc 2013
15

Repair Pathway Choices and Consequences at the Double-Strand Break.
Raphael Ceccaldi, Beatrice Rondinelli, Alan D D'Andrea. Trends Cell Biol 2016
666
15

Sources of DNA double-strand breaks and models of recombinational DNA repair.
Anuja Mehta, James E Haber. Cold Spring Harb Perspect Biol 2014
365
15

Mechanisms underlying structural variant formation in genomic disorders.
Claudia M B Carvalho, James R Lupski. Nat Rev Genet 2016
276
15


Human genomic deletions mediated by recombination between Alu elements.
Shurjo K Sen, Kyudong Han, Jianxin Wang, Jungnam Lee, Hui Wang, Pauline A Callinan, Matthew Dyer, Richard Cordaux, Ping Liang, Mark A Batzer. Am J Hum Genet 2006
206
12

Chromosomal translocations in human cells are generated by canonical nonhomologous end-joining.
Hind Ghezraoui, Marion Piganeau, Benjamin Renouf, Jean-Baptiste Renaud, Annahita Sallmyr, Brian Ruis, Sehyun Oh, Alan E Tomkinson, Eric A Hendrickson, Carine Giovannangeli,[...]. Mol Cell 2014
199
12


Mammalian polymerase θ promotes alternative NHEJ and suppresses recombination.
Pedro A Mateos-Gomez, Fade Gong, Nidhi Nair, Kyle M Miller, Eros Lazzerini-Denchi, Agnel Sfeir. Nature 2015
341
12

Limiting the persistence of a chromosome break diminishes its mutagenic potential.
Nicole Bennardo, Amanda Gunn, Anita Cheng, Paul Hasty, Jeremy M Stark. PLoS Genet 2009
62
12


Interhomolog recombination and loss of heterozygosity in wild-type and Bloom syndrome helicase (BLM)-deficient mammalian cells.
Jeannine R LaRocque, Jeremy M Stark, Jin Oh, Ekaterina Bojilova, Kosuke Yusa, Kyoji Horie, Junji Takeda, Maria Jasin. Proc Natl Acad Sci U S A 2011
48
12

Evolution of the tumor suppressor BRCA1 locus in primates: implications for cancer predisposition.
Adam Pavlicek, Vladimir N Noskov, Natalay Kouprina, J Carl Barrett, Jerzy Jurka, Vladimir Larionov. Hum Mol Genet 2004
71
12

Human CtIP promotes DNA end resection.
Alessandro A Sartori, Claudia Lukas, Julia Coates, Martin Mistrik, Shuang Fu, Jiri Bartek, Richard Baer, Jiri Lukas, Stephen P Jackson. Nature 2007
917
12

Human RAD52 Captures and Holds DNA Strands, Increases DNA Flexibility, and Prevents Melting of Duplex DNA: Implications for DNA Recombination.
Ineke Brouwer, Hongshan Zhang, Andrea Candelli, Davide Normanno, Erwin J G Peterman, Gijs J L Wuite, Mauro Modesti. Cell Rep 2017
18
27

Alu elements: an intrinsic source of human genome instability.
Catherine Ade, Astrid M Roy-Engel, Prescott L Deininger. Curr Opin Virol 2013
54
10




Genome-wide analyses of LINE-LINE-mediated nonallelic homologous recombination.
Michał Startek, Przemyslaw Szafranski, Tomasz Gambin, Ian M Campbell, Patricia Hixson, Chad A Shaw, Paweł Stankiewicz, Anna Gambin. Nucleic Acids Res 2015
45
10

Mechanism of microhomology-mediated end-joining promoted by human DNA polymerase θ.
Tatiana Kent, Gurushankar Chandramouly, Shane Michael McDevitt, Ahmet Y Ozdemir, Richard T Pomerantz. Nat Struct Mol Biol 2015
163
10

Unrepaired DNA breaks in p53-deficient cells lead to oncogenic gene amplification subsequent to translocations.
Chengming Zhu, Kevin D Mills, David O Ferguson, Charles Lee, John Manis, James Fleming, Yijie Gao, Cynthia C Morton, Frederick W Alt. Cell 2002
331
10

Regulation of homologous recombination in eukaryotes.
Wolf-Dietrich Heyer, Kirk T Ehmsen, Jie Liu. Annu Rev Genet 2010
636
10

Mechanism of eukaryotic homologous recombination.
Joseph San Filippo, Patrick Sung, Hannah Klein. Annu Rev Biochem 2008
10

Alu-containing exons are alternatively spliced.
Rotem Sorek, Gil Ast, Dan Graur. Genome Res 2002
362
10


LINE dancing in the human genome: transposable elements and disease.
Victoria P Belancio, Prescott L Deininger, Astrid M Roy-Engel. Genome Med 2009
88
10


The Alu-rich genomic architecture of SPAST predisposes to diverse and functionally distinct disease-associated CNV alleles.
Philip M Boone, Bo Yuan, Ian M Campbell, Jennifer C Scull, Marjorie A Withers, Brett C Baggett, Christine R Beck, Christine J Shaw, Pawel Stankiewicz, Paolo Moretti,[...]. Am J Hum Genet 2014
60
10



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.