A citation-based method for searching scientific literature

Rajan Jain, Christina E Barkauskas, Norifumi Takeda, Emily J Bowie, Haig Aghajanian, Qiaohong Wang, Arun Padmanabhan, Lauren J Manderfield, Mudit Gupta, Deqiang Li, Li Li, Chinmay M Trivedi, Brigid L M Hogan, Jonathan A Epstein. Nat Commun 2015
Times Cited: 142







List of co-cited articles
1178 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Type 2 alveolar cells are stem cells in adult lung.
Christina E Barkauskas, Michael J Cronce, Craig R Rackley, Emily J Bowie, Douglas R Keene, Barry R Stripp, Scott H Randell, Paul W Noble, Brigid L M Hogan. J Clin Invest 2013
733
70

Alveolar progenitor and stem cells in lung development, renewal and cancer.
Tushar J Desai, Douglas G Brownfield, Mark A Krasnow. Nature 2014
459
47

Regeneration of the lung alveolus by an evolutionarily conserved epithelial progenitor.
William J Zacharias, David B Frank, Jarod A Zepp, Michael P Morley, Farrah A Alkhaleel, Jun Kong, Su Zhou, Edward Cantu, Edward E Morrisey. Nature 2018
237
41

Single-cell Wnt signaling niches maintain stemness of alveolar type 2 cells.
Ahmad N Nabhan, Douglas G Brownfield, Pehr B Harbury, Mark A Krasnow, Tushar J Desai. Science 2018
242
35

Lineage-negative progenitors mobilize to regenerate lung epithelium after major injury.
Andrew E Vaughan, Alexis N Brumwell, Ying Xi, Jeffrey E Gotts, Doug G Brownfield, Barbara Treutlein, Kevin Tan, Victor Tan, Feng Chun Liu, Mark R Looney,[...]. Nature 2015
322
32

Basal cells as stem cells of the mouse trachea and human airway epithelium.
Jason R Rock, Mark W Onaitis, Emma L Rawlins, Yun Lu, Cheryl P Clark, Yan Xue, Scott H Randell, Brigid L M Hogan. Proc Natl Acad Sci U S A 2009
835
30

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq.
Barbara Treutlein, Doug G Brownfield, Angela R Wu, Norma F Neff, Gary L Mantalas, F Hernan Espinoza, Tushar J Desai, Mark A Krasnow, Stephen R Quake. Nature 2014
745
29

Identification of bronchioalveolar stem cells in normal lung and lung cancer.
Carla F Bender Kim, Erica L Jackson, Amber E Woolfenden, Sharon Lawrence, Imran Babar, Sinae Vogel, Denise Crowley, Roderick T Bronson, Tyler Jacks. Cell 2005
28

Pulmonary alveolar type I cell population consists of two distinct subtypes that differ in cell fate.
Yanjie Wang, Zan Tang, Huanwei Huang, Jiao Li, Zheng Wang, Yuanyuan Yu, Chengwei Zhang, Juan Li, Huaping Dai, Fengchao Wang,[...]. Proc Natl Acad Sci U S A 2018
70
40

Distal airway stem cells yield alveoli in vitro and during lung regeneration following H1N1 influenza infection.
Pooja A Kumar, Yuanyu Hu, Yusuke Yamamoto, Neo Boon Hoe, Tay Seok Wei, Dakai Mu, Yan Sun, Lim Siew Joo, Rania Dagher, Elisabeth M Zielonka,[...]. Cell 2011
341
24

Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung.
Jarod A Zepp, William J Zacharias, David B Frank, Christina A Cavanaugh, Su Zhou, Michael P Morley, Edward E Morrisey. Cell 2017
202
24

Repair and regeneration of the respiratory system: complexity, plasticity, and mechanisms of lung stem cell function.
Brigid L M Hogan, Christina E Barkauskas, Harold A Chapman, Jonathan A Epstein, Rajan Jain, Connie C W Hsia, Laura Niklason, Elizabeth Calle, Andrew Le, Scott H Randell,[...]. Cell Stem Cell 2014
425
23

p63(+)Krt5(+) distal airway stem cells are essential for lung regeneration.
Wei Zuo, Ting Zhang, Daniel Zheng'An Wu, Shou Ping Guan, Audrey-Ann Liew, Yusuke Yamamoto, Xia Wang, Siew Joo Lim, Matthew Vincent, Mark Lessard,[...]. Nature 2015
252
23

The role of Scgb1a1+ Clara cells in the long-term maintenance and repair of lung airway, but not alveolar, epithelium.
Emma L Rawlins, Tadashi Okubo, Yan Xue, David M Brass, Richard L Auten, Hiroshi Hasegawa, Fan Wang, Brigid L M Hogan. Cell Stem Cell 2009
499
22

Dedifferentiation of committed epithelial cells into stem cells in vivo.
Purushothama Rao Tata, Hongmei Mou, Ana Pardo-Saganta, Rui Zhao, Mythili Prabhu, Brandon M Law, Vladimir Vinarsky, Josalyn L Cho, Sylvie Breton, Amar Sahay,[...]. Nature 2013
375
22

Emergence of a Wave of Wnt Signaling that Regulates Lung Alveologenesis by Controlling Epithelial Self-Renewal and Differentiation.
David B Frank, Tien Peng, Jarod A Zepp, Melinda Snitow, Tiffaney L Vincent, Ian J Penkala, Zheng Cui, Michael J Herriges, Michael P Morley, Su Zhou,[...]. Cell Rep 2016
99
22

Integrin α6β4 identifies an adult distal lung epithelial population with regenerative potential in mice.
Harold A Chapman, Xiaopeng Li, Jonathan P Alexander, Alexis Brumwell, Walter Lorizio, Kevin Tan, Arnoud Sonnenberg, Ying Wei, Thiennu H Vu. J Clin Invest 2011
260
21

The development and plasticity of alveolar type 1 cells.
Jun Yang, Belinda J Hernandez, Denise Martinez Alanis, Odemaris Narvaez del Pilar, Lisandra Vila-Ellis, Haruhiko Akiyama, Scott E Evans, Edwin J Ostrin, Jichao Chen. Development 2016
60
33

Multiple stromal populations contribute to pulmonary fibrosis without evidence for epithelial to mesenchymal transition.
Jason R Rock, Christina E Barkauskas, Michael J Cronce, Yan Xue, Jeffrey R Harris, Jiurong Liang, Paul W Noble, Brigid L M Hogan. Proc Natl Acad Sci U S A 2011
577
20


Anatomically and Functionally Distinct Lung Mesenchymal Populations Marked by Lgr5 and Lgr6.
Joo-Hyeon Lee, Tuomas Tammela, Matan Hofree, Jinwook Choi, Nemanja Despot Marjanovic, Seungmin Han, David Canner, Katherine Wu, Margherita Paschini, Dong Ha Bhang,[...]. Cell 2017
157
18

Lung regeneration by multipotent stem cells residing at the bronchioalveolar-duct junction.
Qiaozhen Liu, Kuo Liu, Guizhong Cui, Xiuzhen Huang, Shun Yao, Wenke Guo, Zhen Qin, Yan Li, Rui Yang, Wenjuan Pu,[...]. Nat Genet 2019
85
21

Lung stem cell differentiation in mice directed by endothelial cells via a BMP4-NFATc1-thrombospondin-1 axis.
Joo-Hyeon Lee, Dong Ha Bhang, Alexander Beede, Tian Lian Huang, Barry R Stripp, Kenneth D Bloch, Amy J Wagers, Yu-Hua Tseng, Sandra Ryeom, Carla F Kim. Cell 2014
237
17

Niche-mediated BMP/SMAD signaling regulates lung alveolar stem cell proliferation and differentiation.
Mei-I Chung, Melissa Bujnis, Christina E Barkauskas, Yoshihiko Kobayashi, Brigid L M Hogan. Development 2018
77
22

Endothelial-derived angiocrine signals induce and sustain regenerative lung alveolarization.
Bi-Sen Ding, Daniel J Nolan, Peipei Guo, Alexander O Babazadeh, Zhongwei Cao, Zev Rosenwaks, Ronald G Crystal, Michael Simons, Thomas N Sato, Stefan Worgall,[...]. Cell 2011
288
16

Recruited Monocytes and Type 2 Immunity Promote Lung Regeneration following Pneumonectomy.
Andrew J Lechner, Ian H Driver, Jinwoo Lee, Carmen M Conroy, Abigail Nagle, Richard M Locksley, Jason R Rock. Cell Stem Cell 2017
89
17

A revised airway epithelial hierarchy includes CFTR-expressing ionocytes.
Daniel T Montoro, Adam L Haber, Moshe Biton, Vladimir Vinarsky, Brian Lin, Susan E Birket, Feng Yuan, Sijia Chen, Hui Min Leung, Jorge Villoria,[...]. Nature 2018
361
16

Airway basal stem cells: a perspective on their roles in epithelial homeostasis and remodeling.
Jason R Rock, Scott H Randell, Brigid L M Hogan. Dis Model Mech 2010
390
15

Efficient generation of lung and airway epithelial cells from human pluripotent stem cells.
Sarah X L Huang, Mohammad Naimul Islam, John O'Neill, Zheng Hu, Yong-Guang Yang, Ya-Wen Chen, Melanie Mumau, Michael D Green, Gordana Vunjak-Novakovic, Jahar Bhattacharya,[...]. Nat Biotechnol 2014
312
15

Differentiation of Human Pluripotent Stem Cells into Functional Lung Alveolar Epithelial Cells.
Anjali Jacob, Michael Morley, Finn Hawkins, Katherine B McCauley, J C Jean, Hillary Heins, Cheng-Lun Na, Timothy E Weaver, Marall Vedaie, Killian Hurley,[...]. Cell Stem Cell 2017
165
15

Notch-dependent differentiation of adult airway basal stem cells.
Jason R Rock, Xia Gao, Yan Xue, Scott H Randell, Young-Yun Kong, Brigid L M Hogan. Cell Stem Cell 2011
265
14

Functional characterization of pulmonary neuroendocrine cells in lung development, injury, and tumorigenesis.
Hai Song, Erica Yao, Chuwen Lin, Rhodora Gacayan, Miao-Hsueh Chen, Pao-Tien Chuang. Proc Natl Acad Sci U S A 2012
153
14

Injury induces direct lineage segregation of functionally distinct airway basal stem/progenitor cell subpopulations.
Ana Pardo-Saganta, Brandon M Law, Purushothama Rao Tata, Jorge Villoria, Borja Saez, Hongmei Mou, Rui Zhao, Jayaraj Rajagopal. Cell Stem Cell 2015
107
14


Local lung hypoxia determines epithelial fate decisions during alveolar regeneration.
Ying Xi, Thomas Kim, Alexis N Brumwell, Ian H Driver, Ying Wei, Victor Tan, Julia R Jackson, Jianming Xu, Dong-Kee Lee, Jeffrey E Gotts,[...]. Nat Cell Biol 2017
101
14

A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte.
Lindsey W Plasschaert, Rapolas Žilionis, Rayman Choo-Wing, Virginia Savova, Judith Knehr, Guglielmo Roma, Allon M Klein, Aron B Jaffe. Nature 2018
339
14

Telomere dysfunction causes alveolar stem cell failure.
Jonathan K Alder, Christina E Barkauskas, Nathachit Limjunyawong, Susan E Stanley, Frant Kembou, Rubin M Tuder, Brigid L M Hogan, Wayne Mitzner, Mary Armanios. Proc Natl Acad Sci U S A 2015
167
13


Bronchioalveolar stem cells are a main source for regeneration of distal lung epithelia in vivo.
Isabelle Salwig, Birgit Spitznagel, Ana Ivonne Vazquez-Armendariz, Keynoosh Khalooghi, Stefan Guenther, Susanne Herold, Marten Szibor, Thomas Braun. EMBO J 2019
57
22


Clonal Dynamics Reveal Two Distinct Populations of Basal Cells in Slow-Turnover Airway Epithelium.
Julie K Watson, Steffen Rulands, Adam C Wilkinson, Aline Wuidart, Marielle Ousset, Alexandra Van Keymeulen, Berthold Göttgens, Cédric Blanpain, Benjamin D Simons, Emma L Rawlins. Cell Rep 2015
86
13

Renewal of alveolar epithelium in the rat following exposure to NO2.
M J Evans, L J Cabral, R J Stephens, G Freeman. Am J Pathol 1973
405
12

IL-6/STAT3 promotes regeneration of airway ciliated cells from basal stem cells.
Tomomi Tadokoro, Yang Wang, Larry S Barak, Yushi Bai, Scott H Randell, Brigid L M Hogan. Proc Natl Acad Sci U S A 2014
135
12

Single-cell RNA sequencing identifies diverse roles of epithelial cells in idiopathic pulmonary fibrosis.
Yan Xu, Takako Mizuno, Anusha Sridharan, Yina Du, Minzhe Guo, Jie Tang, Kathryn A Wikenheiser-Brokamp, Anne-Karina T Perl, Vincent A Funari, Jason J Gokey,[...]. JCI Insight 2016
249
12

A three-dimensional model of human lung development and disease from pluripotent stem cells.
Ya-Wen Chen, Sarah Xuelian Huang, Ana Luisa Rodrigues Toste de Carvalho, Siu-Hong Ho, Mohammad Naimul Islam, Stefano Volpi, Luigi D Notarangelo, Michael Ciancanelli, Jean-Laurent Casanova, Jahar Bhattacharya,[...]. Nat Cell Biol 2017
216
12

Uroplakin 3a+ Cells Are a Distinctive Population of Epithelial Progenitors that Contribute to Airway Maintenance and Post-injury Repair.
Arjun Guha, Aditya Deshpande, Aradhya Jain, Paola Sebastiani, Wellington V Cardoso. Cell Rep 2017
42
28

Hedgehog actively maintains adult lung quiescence and regulates repair and regeneration.
Tien Peng, David B Frank, Rachel S Kadzik, Michael P Morley, Komal S Rathi, Tao Wang, Su Zhou, Lan Cheng, Min Min Lu, Edward E Morrisey. Nature 2015
109
11

Rare SOX2+ Airway Progenitor Cells Generate KRT5+ Cells that Repopulate Damaged Alveolar Parenchyma following Influenza Virus Infection.
Samriddha Ray, Norika Chiba, Changfu Yao, Xiangrong Guan, Alicia M McConnell, Brian Brockway, Loretta Que, Jonathan L McQualter, Barry R Stripp. Stem Cell Reports 2016
52
21

In vitro generation of human pluripotent stem cell derived lung organoids.
Briana R Dye, David R Hill, Michael A H Ferguson, Yu-Hwai Tsai, Melinda S Nagy, Rachel Dyal, James M Wells, Christopher N Mayhew, Roy Nattiv, Ophir D Klein,[...]. Elife 2015
356
11

MAPK-Mediated YAP Activation Controls Mechanical-Tension-Induced Pulmonary Alveolar Regeneration.
Zhe Liu, Huijuan Wu, Kewu Jiang, Yanjie Wang, Wenjing Zhang, Qiqi Chu, Juan Li, Huanwei Huang, Tao Cai, Hongbin Ji,[...]. Cell Rep 2016
84
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.