A citation-based method for searching scientific literature

Gonçalo Lopes, Niccolò Bonacchi, João Frazão, Joana P Neto, Bassam V Atallah, Sofia Soares, Luís Moreira, Sara Matias, Pavel M Itskov, Patrícia A Correia, Roberto E Medina, Lorenza Calcaterra, Elena Dreosti, Joseph J Paton, Adam R Kampff. Front Neuroinform 2015
Times Cited: 108







List of co-cited articles
511 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


DeepLabCut: markerless pose estimation of user-defined body parts with deep learning.
Alexander Mathis, Pranav Mamidanna, Kevin M Cury, Taiga Abe, Venkatesh N Murthy, Mackenzie Weygandt Mathis, Matthias Bethge. Nat Neurosci 2018
460
18

Open Ephys: an open-source, plugin-based platform for multichannel electrophysiology.
Joshua H Siegle, Aarón Cuevas López, Yogi A Patel, Kirill Abramov, Shay Ohayon, Jakob Voigts. J Neural Eng 2017
123
15

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
13

Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
12

Automated monitoring and quantitative analysis of feeding behaviour in Drosophila.
Pavel M Itskov, José-Maria Moreira, Ekaterina Vinnik, Gonçalo Lopes, Steve Safarik, Michael H Dickinson, Carlos Ribeiro. Nat Commun 2014
85
9

MouseMove: an open source program for semi-automated analysis of movement and cognitive testing in rodents.
Andre L Samson, Lining Ju, Hyun Ah Kim, Shenpeng R Zhang, Jessica A A Lee, Sharelle A Sturgeon, Christopher G Sobey, Shaun P Jackson, Simone M Schoenwaelder. Sci Rep 2015
31
22

Neuroscience Needs Behavior: Correcting a Reductionist Bias.
John W Krakauer, Asif A Ghazanfar, Alex Gomez-Marin, Malcolm A MacIver, David Poeppel. Neuron 2017
356
7

Independent optical excitation of distinct neural populations.
Nathan C Klapoetke, Yasunobu Murata, Sung Soo Kim, Stefan R Pulver, Amanda Birdsey-Benson, Yong Ku Cho, Tania K Morimoto, Amy S Chuong, Eric J Carpenter, Zhijian Tian,[...]. Nat Methods 2014
862
7

JAABA: interactive machine learning for automatic annotation of animal behavior.
Mayank Kabra, Alice A Robie, Marta Rivera-Alba, Steven Branson, Kristin Branson. Nat Methods 2013
196
6

Miniaturized integration of a fluorescence microscope.
Kunal K Ghosh, Laurie D Burns, Eric D Cocker, Axel Nimmerjahn, Yaniv Ziv, Abbas El Gamal, Mark J Schnitzer. Nat Methods 2011
438
6

Open source modules for tracking animal behavior and closed-loop stimulation based on Open Ephys and Bonsai.
Alessio Paolo Buccino, Mikkel Elle Lepperød, Svenn-Arne Dragly, Philipp Häfliger, Marianne Fyhn, Torkel Hafting. J Neural Eng 2018
10
60

Mapping Sub-Second Structure in Mouse Behavior.
Alexander B Wiltschko, Matthew J Johnson, Giuliano Iurilli, Ralph E Peterson, Jesse M Katon, Stan L Pashkovski, Victoria E Abraira, Ryan P Adams, Sandeep Robert Datta. Neuron 2015
199
6

Prey capture behavior evoked by simple visual stimuli in larval zebrafish.
Isaac H Bianco, Adam R Kampff, Florian Engert. Front Syst Neurosci 2011
131
6

A quantitative framework for whole-body coordination reveals specific deficits in freely walking ataxic mice.
Ana S Machado, Dana M Darmohray, João Fayad, Hugo G Marques, Megan R Carey. Elife 2015
70
7

Genome-wide atlas of gene expression in the adult mouse brain.
Ed S Lein, Michael J Hawrylycz, Nancy Ao, Mikael Ayres, Amy Bensinger, Amy Bernard, Andrew F Boe, Mark S Boguski, Kevin S Brockway, Emi J Byrnes,[...]. Nature 2007
5

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
365
5

Cortical Membrane Potential Signature of Optimal States for Sensory Signal Detection.
Matthew J McGinley, Stephen V David, David A McCormick. Neuron 2015
283
5

Spike sorting for large, dense electrode arrays.
Cyrille Rossant, Shabnam N Kadir, Dan F M Goodman, John Schulman, Maximilian L D Hunter, Aman B Saleem, Andres Grosmark, Mariano Belluscio, George H Denfield, Alexander S Ecker,[...]. Nat Neurosci 2016
269
5

idTracker: tracking individuals in a group by automatic identification of unmarked animals.
Alfonso Pérez-Escudero, Julián Vicente-Page, Robert C Hinz, Sara Arganda, Gonzalo G de Polavieja. Nat Methods 2014
242
5

High-throughput ethomics in large groups of Drosophila.
Kristin Branson, Alice A Robie, John Bender, Pietro Perona, Michael H Dickinson. Nat Methods 2009
346
5

A Visual Pathway for Looming-Evoked Escape in Larval Zebrafish.
Incinur Temizer, Joseph C Donovan, Herwig Baier, Julia L Semmelhack. Curr Biol 2015
106
5

Structure of the Zebrafish Locomotor Repertoire Revealed with Unsupervised Behavioral Clustering.
João C Marques, Simone Lackner, Rita Félix, Michael B Orger. Curr Biol 2018
69
7


A shared neural ensemble links distinct contextual memories encoded close in time.
Denise J Cai, Daniel Aharoni, Tristan Shuman, Justin Shobe, Jeremy Biane, Weilin Song, Brandon Wei, Michael Veshkini, Mimi La-Vu, Jerry Lou,[...]. Nature 2016
321
5

Fast animal pose estimation using deep neural networks.
Talmo D Pereira, Diego E Aldarondo, Lindsay Willmore, Mikhail Kislin, Samuel S-H Wang, Mala Murthy, Joshua W Shaevitz. Nat Methods 2019
107
5

Stytra: An open-source, integrated system for stimulation, tracking and closed-loop behavioral experiments.
Vilim Štih, Luigi Petrucco, Andreas M Kist, Ruben Portugues. PLoS Comput Biol 2019
18
27

Activity patterns of serotonin neurons underlying cognitive flexibility.
Sara Matias, Eran Lottem, Guillaume P Dugué, Zachary F Mainen. Elife 2017
80
5

Targeting Cre recombinase to specific neuron populations with bacterial artificial chromosome constructs.
Shiaoching Gong, Martin Doughty, Carroll R Harbaugh, Alexander Cummins, Mary E Hatten, Nathaniel Heintz, Charles R Gerfen. J Neurosci 2007
518
4

Activation of dorsal raphe serotonergic neurons promotes waiting but is not reinforcing.
Madalena S Fonseca, Masayoshi Murakami, Zachary F Mainen. Curr Biol 2015
100
4

Neuron-type-specific signals for reward and punishment in the ventral tegmental area.
Jeremiah Y Cohen, Sebastian Haesler, Linh Vong, Bradford B Lowell, Naoshige Uchida. Nature 2012
657
4

PsychoPy--Psychophysics software in Python.
Jonathan W Peirce. J Neurosci Methods 2007
4

A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing.
Linda Madisen, Tianyi Mao, Henner Koch, Jia-min Zhuo, Antal Berenyi, Shigeyoshi Fujisawa, Yun-Wei A Hsu, Alfredo J Garcia, Xuan Gu, Sebastien Zanella,[...]. Nat Neurosci 2012
700
4

Evolving the lock to fit the key to create a family of G protein-coupled receptors potently activated by an inert ligand.
Blaine N Armbruster, Xiang Li, Mark H Pausch, Stefan Herlitze, Bryan L Roth. Proc Natl Acad Sci U S A 2007
4

Elucidating an Affective Pain Circuit that Creates a Threat Memory.
Sung Han, Matthew T Soleiman, Marta E Soden, Larry S Zweifel, Richard D Palmiter. Cell 2015
195
4


Pupil fluctuations track rapid changes in adrenergic and cholinergic activity in cortex.
Jacob Reimer, Matthew J McGinley, Yang Liu, Charles Rodenkirch, Qi Wang, David A McCormick, Andreas S Tolias. Nat Commun 2016
255
4


Amygdala circuitry mediating reversible and bidirectional control of anxiety.
Kay M Tye, Rohit Prakash, Sung-Yon Kim, Lief E Fenno, Logan Grosenick, Hosniya Zarabi, Kimberly R Thompson, Viviana Gradinaru, Charu Ramakrishnan, Karl Deisseroth. Nature 2011
699
4

Arousal and locomotion make distinct contributions to cortical activity patterns and visual encoding.
Martin Vinck, Renata Batista-Brito, Ulf Knoblich, Jessica A Cardin. Neuron 2015
283
4

Natural neural projection dynamics underlying social behavior.
Lisa A Gunaydin, Logan Grosenick, Joel C Finkelstein, Isaac V Kauvar, Lief E Fenno, Avishek Adhikari, Stephan Lammel, Julie J Mirzabekov, Raag D Airan, Kelly A Zalocusky,[...]. Cell 2014
574
4

Falcon: a highly flexible open-source software for closed-loop neuroscience.
Davide Ciliberti, Fabian Kloosterman. J Neural Eng 2017
18
22

The Psychophysics Toolbox.
D H Brainard. Spat Vis 1997
4

The functional organization of descending sensory-motor pathways in Drosophila.
Shigehiro Namiki, Michael H Dickinson, Allan M Wong, Wyatt Korff, Gwyneth M Card. Elife 2018
91
4

Altered electrical properties in Drosophila neurons developing without synaptic transmission.
R A Baines, J P Uhler, A Thompson, S T Sweeney, M Bate. J Neurosci 2001
332
4

Creating low-impedance tetrodes by electroplating with additives.
John E Ferguson, Chris Boldt, A David Redish. Sens Actuators A Phys 2009
61
6

A dedicated visual pathway for prey detection in larval zebrafish.
Julia L Semmelhack, Joseph C Donovan, Tod R Thiele, Enrico Kuehn, Eva Laurell, Herwig Baier. Elife 2014
91
4

Neural Circuits Underlying Visually Evoked Escapes in Larval Zebrafish.
Timothy W Dunn, Christoph Gebhardt, Eva A Naumann, Clemens Riegler, Misha B Ahrens, Florian Engert, Filippo Del Bene. Neuron 2016
132
4

MIN1PIPE: A Miniscope 1-Photon-Based Calcium Imaging Signal Extraction Pipeline.
Jinghao Lu, Chunyuan Li, Jonnathan Singh-Alvarado, Zhe Charles Zhou, Flavio Fröhlich, Richard Mooney, Fan Wang. Cell Rep 2018
28
14

NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data.
Eftychios A Pnevmatikakis, Andrea Giovannucci. J Neurosci Methods 2017
153
4

Brain-wide neuronal dynamics during motor adaptation in zebrafish.
Misha B Ahrens, Jennifer M Li, Michael B Orger, Drew N Robson, Alexander F Schier, Florian Engert, Ruben Portugues. Nature 2012
336
4


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.