A citation-based method for searching scientific literature

Aashiq H Mirza, Claus Hb Berthelsen, Stefan E Seemann, Xiaoyong Pan, Klaus S Frederiksen, Mogens Vilien, Jan Gorodkin, Flemming Pociot. Genome Med 2015
Times Cited: 98







List of co-cited articles
660 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



A long noncoding RNA signature for ulcerative colitis identifies IFNG-AS1 as an enhancer of inflammation.
David Padua, Swapna Mahurkar-Joshi, Ivy Ka Man Law, Christos Polytarchou, John P Vu, Joseph R Pisegna, David Shih, Dimitrios Iliopoulos, Charalabos Pothoulakis. Am J Physiol Gastrointest Liver Physiol 2016
59
37

LncRNA DQ786243 affects Treg related CREB and Foxp3 expression in Crohn's disease.
Yu Qi Qiao, Mei Lan Huang, An Tao Xu, Di Zhao, Zhi Hua Ran, Jun Shen. J Biomed Sci 2013
46
34

A long noncoding RNA mediates both activation and repression of immune response genes.
Susan Carpenter, Daniel Aiello, Maninjay K Atianand, Emiliano P Ricci, Pallavi Gandhi, Lisa L Hall, Meg Byron, Brian Monks, Meabh Henry-Bezy, Jeanne B Lawrence,[...]. Science 2013
611
15

Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Luke Jostins, Stephan Ripke, Rinse K Weersma, Richard H Duerr, Dermot P McGovern, Ken Y Hui, James C Lee, L Philip Schumm, Yashoda Sharma, Carl A Anderson,[...]. Nature 2012
14

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Gregory Guernec, David Martin, Angelika Merkel, David G Knowles,[...]. Genome Res 2012
12

The NeST long ncRNA controls microbial susceptibility and epigenetic activation of the interferon-γ locus.
J Antonio Gomez, Orly L Wapinski, Yul W Yang, Jean-François Bureau, Smita Gopinath, Denise M Monack, Howard Y Chang, Michel Brahic, Karla Kirkegaard. Cell 2013
444
12

Increasing incidence and prevalence of the inflammatory bowel diseases with time, based on systematic review.
Natalie A Molodecky, Ing Shian Soon, Doreen M Rabi, William A Ghali, Mollie Ferris, Greg Chernoff, Eric I Benchimol, Remo Panaccione, Subrata Ghosh, Herman W Barkema,[...]. Gastroenterology 2012
11


The contribution of long non-coding RNAs in Inflammatory Bowel Diseases.
Eirini Zacharopoulou, Maria Gazouli, Maria Tzouvala, Antonios Vezakis, George Karamanolis. Dig Liver Dis 2017
33
33

The STAT3-binding long noncoding RNA lnc-DC controls human dendritic cell differentiation.
Pin Wang, Yiquan Xue, Yanmei Han, Li Lin, Cong Wu, Sheng Xu, Zhengping Jiang, Junfang Xu, Qiuyan Liu, Xuetao Cao. Science 2014
675
10

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals.
Mitchell Guttman, Ido Amit, Manuel Garber, Courtney French, Michael F Lin, David Feldser, Maite Huarte, Or Zuk, Bryce W Carey, John P Cassady,[...]. Nature 2009
10

Genome regulation by long noncoding RNAs.
John L Rinn, Howard Y Chang. Annu Rev Biochem 2012
9

Long non-coding RNAs: insights into functions.
Tim R Mercer, Marcel E Dinger, John S Mattick. Nat Rev Genet 2009
9

Plasma long noncoding RNA expression profile identified by microarray in patients with Crohn's disease.
Dong Chen, Jiang Liu, Hui-Ying Zhao, Yi-Peng Chen, Zun Xiang, Xi Jin. World J Gastroenterol 2016
21
42

Molecular mechanisms of long noncoding RNAs.
Kevin C Wang, Howard Y Chang. Mol Cell 2011
9

Long non-coding RNA ANRIL regulates inflammatory responses as a novel component of NF-κB pathway.
Xiao Zhou, Xiaorui Han, Ann Wittfeldt, Jingzhi Sun, Chujun Liu, Xiaoxia Wang, Li-Ming Gan, Huiqing Cao, Zicai Liang. RNA Biol 2016
131
9

Gene expression differences among different MSI statuses in colorectal cancer.
Lei Chen, Xiaoyong Pan, XiaoHua Hu, Yu-Hang Zhang, ShaoPeng Wang, Tao Huang, Yu-Dong Cai. Int J Cancer 2018
54
16


A mammalian pseudogene lncRNA at the interface of inflammation and anti-inflammatory therapeutics.
Nicole A Rapicavoli, Kun Qu, Jiajing Zhang, Megan Mikhail, Remi-Martin Laberge, Howard Y Chang. Elife 2013
316
8

Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity.
Barbara Hrdlickova, Vinod Kumar, Kartiek Kanduri, Daria V Zhernakova, Subhash Tripathi, Juha Karjalainen, Riikka J Lund, Yang Li, Ubaid Ullah, Rutger Modderman,[...]. Genome Med 2014
74
10

The long noncoding RNA THRIL regulates TNFα expression through its interaction with hnRNPL.
Zhonghan Li, Ti-Chun Chao, Kung-Yen Chang, Nianwei Lin, Veena S Patil, Chisato Shimizu, Steven R Head, Jane C Burns, Tariq M Rana. Proc Natl Acad Sci U S A 2014
391
8

A long noncoding RNA associated with susceptibility to celiac disease.
Ainara Castellanos-Rubio, Nora Fernandez-Jimenez, Radomir Kratchmarov, Xiaobing Luo, Govind Bhagat, Peter H R Green, Robert Schneider, Megerditch Kiledjian, Jose Ramon Bilbao, Sankar Ghosh. Science 2016
139
8

Long non-coding RNAs: new players in cell differentiation and development.
Alessandro Fatica, Irene Bozzoni. Nat Rev Genet 2014
8


Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.
Moran N Cabili, Cole Trapnell, Loyal Goff, Magdalena Koziol, Barbara Tazon-Vega, Aviv Regev, John L Rinn. Genes Dev 2011
7

The human long noncoding RNA lnc-IL7R regulates the inflammatory response.
Huachun Cui, Na Xie, Zheng Tan, Sami Banerjee, Victor John Thannickal, Edward Abraham, Gang Liu. Eur J Immunol 2014
131
7

Human disease-associated genetic variation impacts large intergenic non-coding RNA expression.
Vinod Kumar, Harm-Jan Westra, Juha Karjalainen, Daria V Zhernakova, Tõnu Esko, Barbara Hrdlickova, Rodrigo Almeida, Alexandra Zhernakova, Eva Reinmaa, Urmo Võsa,[...]. PLoS Genet 2013
193
7

Landscape of transcription in human cells.
Sarah Djebali, Carrie A Davis, Angelika Merkel, Alex Dobin, Timo Lassmann, Ali Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger,[...]. Nature 2012
7

Cutting edge: influence of Tmevpg1, a long intergenic noncoding RNA, on the expression of Ifng by Th1 cells.
Sarah P Collier, Patrick L Collins, Christopher L Williams, Mark R Boothby, Thomas M Aune. J Immunol 2012
167
7


Emerging role of long noncoding RNAs in autoimmune diseases.
Guo-Cui Wu, Hai-Feng Pan, Rui-Xue Leng, De-Guang Wang, Xiang-Pei Li, Xiao-Mei Li, Dong-Qing Ye. Autoimmun Rev 2015
153
7

Evolution and functions of long noncoding RNAs.
Chris P Ponting, Peter L Oliver, Wolf Reik. Cell 2009
7

Effect of Long Noncoding RNA H19 Overexpression on Intestinal Barrier Function and Its Potential Role in the Pathogenesis of Ulcerative Colitis.
Shan-Wen Chen, Peng-Yuan Wang, Yu-Cun Liu, Lie Sun, Jing Zhu, Shuai Zuo, Ju Ma, Teng-Yu Li, Jun-Ling Zhang, Guo-Wei Chen,[...]. Inflamm Bowel Dis 2016
37
18

Worldwide incidence and prevalence of inflammatory bowel disease in the 21st century: a systematic review of population-based studies.
Siew C Ng, Hai Yun Shi, Nima Hamidi, Fox E Underwood, Whitney Tang, Eric I Benchimol, Remo Panaccione, Subrata Ghosh, Justin C Y Wu, Francis K L Chan,[...]. Lancet 2017
7

The landscape of long noncoding RNAs in the human transcriptome.
Matthew K Iyer, Yashar S Niknafs, Rohit Malik, Udit Singhal, Anirban Sahu, Yasuyuki Hosono, Terrence R Barrette, John R Prensner, Joseph R Evans, Shuang Zhao,[...]. Nat Genet 2015
6

MicroRNAs: new players in IBD.
R Kalla, N T Ventham, N A Kennedy, J F Quintana, E R Nimmo, A H Buck, J Satsangi. Gut 2015
151
6

The emerging role of miRNAs in inflammatory bowel disease: a review.
Christopher G Chapman, Joel Pekow. Therap Adv Gastroenterol 2015
96
6

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.
Ahmad M Khalil, Mitchell Guttman, Maite Huarte, Manuel Garber, Arjun Raj, Dianali Rivea Morales, Kelly Thomas, Aviva Presser, Bradley E Bernstein, Alexander van Oudenaarden,[...]. Proc Natl Acad Sci U S A 2009
6

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis.
Rajnish A Gupta, Nilay Shah, Kevin C Wang, Jeewon Kim, Hugo M Horlings, David J Wong, Miao-Chih Tsai, Tiffany Hung, Pedram Argani, John L Rinn,[...]. Nature 2010
6

The Long Noncoding RNA IFNG-AS1 Promotes T Helper Type 1 Cells Response in Patients with Hashimoto's Thyroiditis.
Huiyong Peng, Yingzhao Liu, Jie Tian, Jie Ma, Xinyi Tang, Ke Rui, Xinyu Tian, Chaoming Mao, Liwei Lu, Huaxi Xu,[...]. Sci Rep 2015
50
12

Long non-coding RNAs in the regulation of the immune response.
James A Heward, Mark A Lindsay. Trends Immunol 2014
270
6

Unique features of long non-coding RNA biogenesis and function.
Jeffrey J Quinn, Howard Y Chang. Nat Rev Genet 2016
6

A Long Noncoding RNA lincRNA-EPS Acts as a Transcriptional Brake to Restrain Inflammation.
Maninjay K Atianand, Wenqian Hu, Ansuman T Satpathy, Ying Shen, Emiliano P Ricci, Juan R Alvarez-Dominguez, Ankit Bhatta, Stefan A Schattgen, Jason D McGowan, Juliana Blin,[...]. Cell 2016
252
6

Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature.
Yael Haberman, Timothy L Tickle, Phillip J Dexheimer, Mi-Ok Kim, Dora Tang, Rebekah Karns, Robert N Baldassano, Joshua D Noe, Joel Rosh, James Markowitz,[...]. J Clin Invest 2014
288
6

Effects of GWAS-associated genetic variants on lncRNAs within IBD and T1D candidate loci.
Aashiq H Mirza, Simranjeet Kaur, Caroline A Brorsson, Flemming Pociot. PLoS One 2014
47
12

Genetics and pathogenesis of inflammatory bowel disease.
Bernard Khor, Agnès Gardet, Ramnik J Xavier. Nature 2011
6



Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy.
Hanchuan Peng, Fuhui Long, Chris Ding. IEEE Trans Pattern Anal Mach Intell 2005
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.