A citation-based method for searching scientific literature

Michalis Fragkos, Olivier Ganier, Philippe Coulombe, Marcel Méchali. Nat Rev Mol Cell Biol 2015
Times Cited: 254







List of co-cited articles
1089 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



DNA replication stress as a hallmark of cancer.
Morgane Macheret, Thanos D Halazonetis. Annu Rev Pathol 2015
380
18

Causes and consequences of replication stress.
Michelle K Zeman, Karlene A Cimprich. Nat Cell Biol 2014
18

Replication stress and cancer.
Hélène Gaillard, Tatiana García-Muse, Andrés Aguilera. Nat Rev Cancer 2015
471
17

Eukaryotic DNA Replication Fork.
Peter M J Burgers, Thomas A Kunkel. Annu Rev Biochem 2017
230
16

DNA replication timing.
Nicholas Rhind, David M Gilbert. Cold Spring Harb Perspect Biol 2013
189
16


The essential kinase ATR: ensuring faithful duplication of a challenging genome.
Joshua C Saldivar, David Cortez, Karlene A Cimprich. Nat Rev Mol Cell Biol 2017
337
14

Replication landscape of the human genome.
Nataliya Petryk, Malik Kahli, Yves d'Aubenton-Carafa, Yan Jaszczyszyn, Yimin Shen, Maud Silvain, Claude Thermes, Chun-Long Chen, Olivier Hyrien. Nat Commun 2016
145
13

Nucleotide deficiency promotes genomic instability in early stages of cancer development.
Assaf C Bester, Maayan Roniger, Yifat S Oren, Michael M Im, Dan Sarni, Malka Chaoat, Aaron Bensimon, Gideon Zamir, Donna S Shewach, Batsheva Kerem. Cell 2011
549
13

DNA replication origins-where do we begin?
Marie-Noëlle Prioleau, David M MacAlpine. Genes Dev 2016
91
13

Global reorganization of replication domains during embryonic stem cell differentiation.
Ichiro Hiratani, Tyrone Ryba, Mari Itoh, Tomoki Yokochi, Michaela Schwaiger, Chia-Wei Chang, Yung Lyou, Tim M Townes, Dirk Schübeler, David M Gilbert. PLoS Biol 2008
387
12

The chromatin environment shapes DNA replication origin organization and defines origin classes.
Christelle Cayrou, Benoit Ballester, Isabelle Peiffer, Romain Fenouil, Philippe Coulombe, Jean-Christophe Andrau, Jacques van Helden, Marcel Méchali. Genome Res 2015
91
12

The impact of replication stress on replication dynamics and DNA damage in vertebrate cells.
Hervé Técher, Stéphane Koundrioukoff, Alain Nicolas, Michelle Debatisse. Nat Rev Genet 2017
135
11

Mechanisms of Oncogene-Induced Replication Stress: Jigsaw Falling into Place.
Panagiotis Kotsantis, Eva Petermann, Simon J Boulton. Cancer Discov 2018
148
11

The Replication Checkpoint Prevents Two Types of Fork Collapse without Regulating Replisome Stability.
Huzefa Dungrawala, Kristie L Rose, Kamakoti P Bhat, Kareem N Mohni, Gloria G Glick, Frank B Couch, David Cortez. Mol Cell 2015
210
10

Conserved nucleosome positioning defines replication origins.
Matthew L Eaton, Kyriaki Galani, Sukhyun Kang, Stephen P Bell, David M MacAlpine. Genes Dev 2010
252
10

H2A.Z facilitates licensing and activation of early replication origins.
Haizhen Long, Liwei Zhang, Mengjie Lv, Zengqi Wen, Wenhao Zhang, Xiulan Chen, Peitao Zhang, Tongqing Li, Luyuan Chang, Caiwei Jin,[...]. Nature 2020
53
18

Hallmarks of cancer: the next generation.
Douglas Hanahan, Robert A Weinberg. Cell 2011
10

Excess MCM proteins protect human cells from replicative stress by licensing backup origins of replication.
Arkaitz Ibarra, Etienne Schwob, Juan Méndez. Proc Natl Acad Sci U S A 2008
316
10

Chromosome Duplication in Saccharomyces cerevisiae.
Stephen P Bell, Karim Labib. Genetics 2016
183
10

Eukaryotic chromosome DNA replication: where, when, and how?
Hisao Masai, Seiji Matsumoto, Zhiying You, Naoko Yoshizawa-Sugata, Masako Oda. Annu Rev Biochem 2010
342
10

Topologically associating domains are stable units of replication-timing regulation.
Benjamin D Pope, Tyrone Ryba, Vishnu Dileep, Feng Yue, Weisheng Wu, Olgert Denas, Daniel L Vera, Yanli Wang, R Scott Hansen, Theresa K Canfield,[...]. Nature 2014
479
9

Regulating DNA replication in eukarya.
Khalid Siddiqui, Kin Fan On, John F X Diffley. Cold Spring Harb Perspect Biol 2013
150
9

The mechanism of eukaryotic CMG helicase activation.
Max E Douglas, Ferdos Abid Ali, Alessandro Costa, John F X Diffley. Nature 2018
103
9

Limiting replication initiation factors execute the temporal programme of origin firing in budding yeast.
Davide Mantiero, Amanda Mackenzie, Anne Donaldson, Philip Zegerman. EMBO J 2011
181
9

Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features.
Christelle Cayrou, Philippe Coulombe, Alice Vigneron, Slavica Stanojcic, Olivier Ganier, Isabelle Peiffer, Eric Rivals, Aurore Puy, Sabine Laurent-Chabalier, Romain Desprat,[...]. Genome Res 2011
218
9

Mechanisms for initiating cellular DNA replication.
Franziska Bleichert, Michael R Botchan, James M Berger. Science 2017
107
9

Dormant origins, the licensing checkpoint, and the response to replicative stresses.
Debbie McIntosh, J Julian Blow. Cold Spring Harb Perspect Biol 2012
79
11

Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types.
Tyrone Ryba, Ichiro Hiratani, Junjie Lu, Mari Itoh, Michael Kulik, Jinfeng Zhang, Thomas C Schulz, Allan J Robins, Stephen Dalton, David M Gilbert. Genome Res 2010
379
9

Transcription shapes DNA replication initiation and termination in human cells.
Yu-Hung Chen, Sarah Keegan, Malik Kahli, Peter Tonzi, David Fenyö, Tony T Huang, Duncan J Smith. Nat Struct Mol Biol 2019
55
16

Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication.
Jiao Sima, Abhijit Chakraborty, Vishnu Dileep, Marco Michalski, Kyle N Klein, Nicolas P Holcomb, Jesse L Turner, Michelle T Paulsen, Juan Carlos Rivera-Mulia, Claudia Trevilla-Garcia,[...]. Cell 2019
76
10

Control of DNA replication timing in the 3D genome.
Claire Marchal, Jiao Sima, David M Gilbert. Nat Rev Mol Cell Biol 2019
69
11

Chromatin Controls DNA Replication Origin Selection, Lagging-Strand Synthesis, and Replication Fork Rates.
Christoph F Kurat, Joseph T P Yeeles, Harshil Patel, Anne Early, John F X Diffley. Mol Cell 2017
136
8

Eukaryotic DNA replication control: lock and load, then fire.
Dirk Remus, John F X Diffley. Curr Opin Cell Biol 2009
173
8

Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs.
Emilie Besnard, Amélie Babled, Laure Lapasset, Ollivier Milhavet, Hugues Parrinello, Christelle Dantec, Jean-Michel Marin, Jean-Marc Lemaitre. Nat Struct Mol Biol 2012
252
8

An intrinsic S/G2 checkpoint enforced by ATR.
Joshua C Saldivar, Stephan Hamperl, Michael J Bocek, Mingyu Chung, Thomas E Bass, Fernanda Cisneros-Soberanis, Kumiko Samejima, Linfeng Xie, James R Paulson, William C Earnshaw,[...]. Science 2018
121
8


An ATR and CHK1 kinase signaling mechanism that limits origin firing during unperturbed DNA replication.
Tatiana N Moiseeva, Yandong Yin, Michael J Calderon, Chenao Qian, Sandra Schamus-Haynes, Norie Sugitani, Hatice U Osmanbeyoglu, Eli Rothenberg, Simon C Watkins, Christopher J Bakkenist. Proc Natl Acad Sci U S A 2019
48
16

Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses.
Stephan Hamperl, Michael J Bocek, Joshua C Saldivar, Tomek Swigut, Karlene A Cimprich. Cell 2017
243
8

High speed of fork progression induces DNA replication stress and genomic instability.
Apolinar Maya-Mendoza, Pavel Moudry, Joanna Maria Merchut-Maya, MyungHee Lee, Robert Strauss, Jiri Bartek. Nature 2018
212
8

Replication Licensing Aberrations, Replication Stress, and Genomic Instability.
Michalis Petropoulos, Spyridon Champeris Tsaniras, Stavros Taraviras, Zoi Lygerou. Trends Biochem Sci 2019
38
21


ATR prohibits replication catastrophe by preventing global exhaustion of RPA.
Luis Ignacio Toledo, Matthias Altmeyer, Maj-Britt Rask, Claudia Lukas, Dorthe Helena Larsen, Lou Klitgaard Povlsen, Simon Bekker-Jensen, Niels Mailand, Jiri Bartek, Jiri Lukas. Cell 2013
490
7

Functional uncoupling of MCM helicase and DNA polymerase activities activates the ATR-dependent checkpoint.
Tony S Byun, Marcin Pacek, Muh-ching Yee, Johannes C Walter, Karlene A Cimprich. Genes Dev 2005
543
7

The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome.
Alex J Kuo, Jikui Song, Peggie Cheung, Satoko Ishibe-Murakami, Sayumi Yamazoe, James K Chen, Dinshaw J Patel, Or Gozani. Nature 2012
219
7

Dual Roles of Poly(dA:dT) Tracts in Replication Initiation and Fork Collapse.
Anthony Tubbs, Sriram Sridharan, Niek van Wietmarschen, Yaakov Maman, Elsa Callen, Andre Stanlie, Wei Wu, Xia Wu, Amanda Day, Nancy Wong,[...]. Cell 2018
89
7

Replication dynamics of the yeast genome.
M K Raghuraman, E A Winzeler, D Collingwood, S Hunt, L Wodicka, A Conway, D J Lockhart, R W Davis, B J Brewer, W L Fangman. Science 2001
598
7

Origin association of Sld3, Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing.
Seiji Tanaka, Ryuichiro Nakato, Yuki Katou, Katsuhiko Shirahige, Hiroyuki Araki. Curr Biol 2011
163
7

Human RIF1 and protein phosphatase 1 stimulate DNA replication origin licensing but suppress origin activation.
Shin-Ichiro Hiraga, Tony Ly, Javier Garzón, Zuzana Hořejší, Yoshi-Nobu Ohkubo, Akinori Endo, Chikashi Obuse, Simon J Boulton, Angus I Lamond, Anne D Donaldson. EMBO Rep 2017
72
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.