A citation-based method for searching scientific literature

Hyunjoo Cha-Molstad, Ki Sa Sung, Joonsung Hwang, Kyoung A Kim, Ji Eun Yu, Young Dong Yoo, Jun Min Jang, Dong Hoon Han, Michael Molstad, Jung Gi Kim, Yoon Jee Lee, Adriana Zakrzewska, Su-Hyeon Kim, Sung Tae Kim, Sun Yong Kim, Hee Gu Lee, Nak Kyun Soung, Jong Seog Ahn, Aaron Ciechanover, Bo Yeon Kim, Yong Tae Kwon. Nat Cell Biol 2015
Times Cited: 143







List of co-cited articles
1337 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


p62/SQSTM1/Sequestosome-1 is an N-recognin of the N-end rule pathway which modulates autophagosome biogenesis.
Hyunjoo Cha-Molstad, Ji Eun Yu, Zhiwei Feng, Su Hyun Lee, Jung Gi Kim, Peng Yang, Bitnara Han, Ki Woon Sung, Young Dong Yoo, Joonsung Hwang,[...]. Nat Commun 2017
130
36

The N-end rule pathway.
Takafumi Tasaki, Shashikanth M Sriram, Kyong Soo Park, Yong Tae Kwon. Annu Rev Biochem 2012
254
29


p62/SQSTM1 forms protein aggregates degraded by autophagy and has a protective effect on huntingtin-induced cell death.
Geir Bjørkøy, Trond Lamark, Andreas Brech, Heidi Outzen, Maria Perander, Aud Overvatn, Harald Stenmark, Terje Johansen. J Cell Biol 2005
18

An essential role of N-terminal arginylation in cardiovascular development.
Yong Tae Kwon, Anna S Kashina, Ilia V Davydov, Rong-Gui Hu, Jee Young An, Jai Wha Seo, Fangyong Du, Alexander Varshavsky. Science 2002
248
18

p62/SQSTM1 binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated protein aggregates by autophagy.
Serhiy Pankiv, Terje Høyvarde Clausen, Trond Lamark, Andreas Brech, Jack-Ansgar Bruun, Heidi Outzen, Aud Øvervatn, Geir Bjørkøy, Terje Johansen. J Biol Chem 2007
16

The N-end rule pathway and regulation by proteolysis.
Alexander Varshavsky. Protein Sci 2011
456
16

The N-end rule pathway: emerging functions and molecular principles of substrate recognition.
Shashikanth M Sriram, Bo Yeon Kim, Yong Tae Kwon. Nat Rev Mol Cell Biol 2011
137
16

A role for NBR1 in autophagosomal degradation of ubiquitinated substrates.
Vladimir Kirkin, Trond Lamark, Yu-Shin Sou, Geir Bjørkøy, Jennifer L Nunn, Jack-Ansgar Bruun, Elena Shvets, David G McEwan, Terje H Clausen, Philipp Wild,[...]. Mol Cell 2009
799
16

Oligomerization of p62 allows for selection of ubiquitinated cargo and isolation membrane during selective autophagy.
Bettina Wurzer, Gabriele Zaffagnini, Dorotea Fracchiolla, Eleonora Turco, Christine Abert, Julia Romanov, Sascha Martens. Elife 2015
151
15

The N-end rule pathway as a nitric oxide sensor controlling the levels of multiple regulators.
Rong-Gui Hu, Jun Sheng, Xin Qi, Zhenming Xu, Terry T Takahashi, Alexander Varshavsky. Nature 2005
226
15

RGS4 and RGS5 are in vivo substrates of the N-end rule pathway.
Min Jae Lee, Takafumi Tasaki, Kayoko Moroi, Jee Young An, Sadao Kimura, Ilia V Davydov, Yong Tae Kwon. Proc Natl Acad Sci U S A 2005
186
15

The selective autophagy receptor p62 forms a flexible filamentous helical scaffold.
Rodolfo Ciuffa, Trond Lamark, Abul K Tarafder, Audrey Guesdon, Sofia Rybina, Wim J H Hagen, Terje Johansen, Carsten Sachse. Cell Rep 2015
133
15


N-degron and C-degron pathways of protein degradation.
Alexander Varshavsky. Proc Natl Acad Sci U S A 2019
221
15

The N-end rule pathway counteracts cell death by destroying proapoptotic protein fragments.
Konstantin I Piatkov, Christopher S Brower, Alexander Varshavsky. Proc Natl Acad Sci U S A 2012
102
14

N-terminal acetylation of cellular proteins creates specific degradation signals.
Cheol-Sang Hwang, Anna Shemorry, Alexander Varshavsky. Science 2010
442
14

Serine 403 phosphorylation of p62/SQSTM1 regulates selective autophagic clearance of ubiquitinated proteins.
Gen Matsumoto, Koji Wada, Misako Okuno, Masaru Kurosawa, Nobuyuki Nukina. Mol Cell 2011
436
13

Interaction codes within the family of mammalian Phox and Bem1p domain-containing proteins.
Trond Lamark, Maria Perander, Heidi Outzen, Kurt Kristiansen, Aud Øvervatn, Espen Michaelsen, Geir Bjørkøy, Terje Johansen. J Biol Chem 2003
281
13

p62 filaments capture and present ubiquitinated cargos for autophagy.
Gabriele Zaffagnini, Adriana Savova, Alberto Danieli, Julia Romanov, Shirley Tremel, Michael Ebner, Thomas Peterbauer, Martin Sztacho, Riccardo Trapannone, Abul K Tarafder,[...]. EMBO J 2018
167
13

ZZ-dependent regulation of p62/SQSTM1 in autophagy.
Yi Zhang, Su Ran Mun, Juan F Linares, JaeWoo Ahn, Christina G Towers, Chang Hoon Ji, Brent E Fitzwalter, Michael R Holden, Wenyi Mi, Xiaobing Shi,[...]. Nat Commun 2018
47
27

Homeostatic levels of p62 control cytoplasmic inclusion body formation in autophagy-deficient mice.
Masaaki Komatsu, Satoshi Waguri, Masato Koike, Yu-Shin Sou, Takashi Ueno, Taichi Hara, Noboru Mizushima, Jun-Ichi Iwata, Junji Ezaki, Shigeo Murata,[...]. Cell 2007
12

The ubiquitin kinase PINK1 recruits autophagy receptors to induce mitophagy.
Michael Lazarou, Danielle A Sliter, Lesley A Kane, Shireen A Sarraf, Chunxin Wang, Jonathon L Burman, Dionisia P Sideris, Adam I Fogel, Richard J Youle. Nature 2015
12

Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants.
Daniel J Gibbs, Seung Cho Lee, Nurulhikma Md Isa, Silvia Gramuglia, Takeshi Fukao, George W Bassel, Cristina Sousa Correia, Françoise Corbineau, Frederica L Theodoulou, Julia Bailey-Serres,[...]. Nature 2011
384
12

An N-end rule pathway that recognizes proline and destroys gluconeogenic enzymes.
Shun-Jia Chen, Xia Wu, Brandon Wadas, Jang-Hyun Oh, Alexander Varshavsky. Science 2017
112
12

N-terminal arginylation generates a bimodal degron that modulates autophagic proteolysis.
Young Dong Yoo, Su Ran Mun, Chang Hoon Ji, Ki Woon Sung, Keum Young Kang, Ah Jung Heo, Su Hyun Lee, Jee Young An, Joonsung Hwang, Xiang-Qun Xie,[...]. Proc Natl Acad Sci U S A 2018
33
36

Control of protein quality and stoichiometries by N-terminal acetylation and the N-end rule pathway.
Anna Shemorry, Cheol-Sang Hwang, Alexander Varshavsky. Mol Cell 2013
200
11

Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization.
Francesco Licausi, Monika Kosmacz, Daan A Weits, Beatrice Giuntoli, Federico M Giorgi, Laurentius A C J Voesenek, Pierdomenico Perata, Joost T van Dongen. Nature 2011
404
11

Insights into degradation mechanism of N-end rule substrates by p62/SQSTM1 autophagy adapter.
Do Hoon Kwon, Ok Hyun Park, Leehyeon Kim, Yang Ouk Jung, Yeonkyoung Park, Hyeongseop Jeong, Jaekyung Hyun, Yoon Ki Kim, Hyun Kyu Song. Nat Commun 2018
44
25

The eukaryotic N-end rule pathway: conserved mechanisms and diverse functions.
Daniel J Gibbs, Jaume Bacardit, Andreas Bachmair, Michael J Holdsworth. Trends Cell Biol 2014
134
10

Characterization of arginylation branch of N-end rule pathway in G-protein-mediated proliferation and signaling of cardiomyocytes.
Min Jae Lee, Dong Eun Kim, Adriana Zakrzewska, Young Dong Yoo, Su-Hyeon Kim, Sung Tae Kim, Jai Wha Seo, Young Sook Lee, Gerald W Dorn, Uhtaek Oh,[...]. J Biol Chem 2012
38
26

A family of mammalian E3 ubiquitin ligases that contain the UBR box motif and recognize N-degrons.
Takafumi Tasaki, Lubbertus C F Mulder, Akihiro Iwamatsu, Min Jae Lee, Ilia V Davydov, Alexander Varshavsky, Mark Muesing, Yong Tae Kwon. Mol Cell Biol 2005
232
10

Plant cysteine oxidases are dioxygenases that directly enable arginyl transferase-catalysed arginylation of N-end rule targets.
Mark D White, Maria Klecker, Richard J Hopkinson, Daan A Weits, Carolin Mueller, Christin Naumann, Rebecca O'Neill, James Wickens, Jiayu Yang, Jonathan C Brooks-Bartlett,[...]. Nat Commun 2017
107
10

Autophagic Degradation of the 26S Proteasome Is Mediated by the Dual ATG8/Ubiquitin Receptor RPN10 in Arabidopsis.
Richard S Marshall, Faqiang Li, David C Gemperline, Adam J Book, Richard D Vierstra. Mol Cell 2015
267
10

p62- and ubiquitin-dependent stress-induced autophagy of the mammalian 26S proteasome.
Victoria Cohen-Kaplan, Ido Livneh, Noa Avni, Bertrand Fabre, Tamar Ziv, Yong Tae Kwon, Aaron Ciechanover. Proc Natl Acad Sci U S A 2016
158
10

Polyubiquitin chain-induced p62 phase separation drives autophagic cargo segregation.
Daxiao Sun, Rongbo Wu, Jingxiang Zheng, Pilong Li, Li Yu. Cell Res 2018
202
10

Regulation of endoplasmic reticulum turnover by selective autophagy.
Aliaksandr Khaminets, Theresa Heinrich, Muriel Mari, Paolo Grumati, Antje K Huebner, Masato Akutsu, Lutz Liebmann, Alexandra Stolz, Sandor Nietzsche, Nicole Koch,[...]. Nature 2015
519
10

Receptor-mediated selective autophagy degrades the endoplasmic reticulum and the nucleus.
Keisuke Mochida, Yu Oikawa, Yayoi Kimura, Hiromi Kirisako, Hisashi Hirano, Yoshinori Ohsumi, Hitoshi Nakatogawa. Nature 2015
388
10

The N-Degron Pathway Mediates ER-phagy.
Chang Hoon Ji, Hee Yeon Kim, Ah Jung Heo, Su Hyun Lee, Min Ju Lee, Su Bin Kim, Ganipisetti Srinivasrao, Su Ran Mun, Hyunjoo Cha-Molstad, Aaron Ciechanover,[...]. Mol Cell 2019
55
18

Global analysis of posttranslational protein arginylation.
Catherine C L Wong, Tao Xu, Reena Rai, Aaron O Bailey, John R Yates, Yuri I Wolf, Henry Zebroski, Anna Kashina. PLoS Biol 2007
103
9

p62/SQSTM1 functions as a signaling hub and an autophagy adaptor.
Yoshinori Katsuragi, Yoshinobu Ichimura, Masaaki Komatsu. FEBS J 2015
483
9

Phosphorylation of p62 activates the Keap1-Nrf2 pathway during selective autophagy.
Yoshinobu Ichimura, Satoshi Waguri, Yu-Shin Sou, Shun Kageyama, Jun Hasegawa, Ryosuke Ishimura, Tetsuya Saito, Yinjie Yang, Tsuguka Kouno, Toshiaki Fukutomi,[...]. Mol Cell 2013
661
9

TBK-1 promotes autophagy-mediated antimicrobial defense by controlling autophagosome maturation.
Manohar Pilli, John Arko-Mensah, Marisa Ponpuak, Esteban Roberts, Sharon Master, Michael A Mandell, Nicolas Dupont, Wojciech Ornatowski, Shanya Jiang, Steven B Bradfute,[...]. Immunity 2012
430
9


The molecular principles of N-end rule recognition.
Shashikanth M Sriram, Yong Tae Kwon. Nat Struct Mol Biol 2010
37
24

Calpain-generated natural protein fragments as short-lived substrates of the N-end rule pathway.
Konstantin I Piatkov, Jang-Hyun Oh, Yuan Liu, Alexander Varshavsky. Proc Natl Acad Sci U S A 2014
61
14

Structural basis for the recognition of N-end rule substrates by the UBR box of ubiquitin ligases.
Woo Suk Choi, Byung-Cheon Jeong, Yoo Jin Joo, Myeong-Ryeol Lee, Joon Kim, Michael J Eck, Hyun Kyu Song. Nat Struct Mol Biol 2010
101
9


Proteasomal and Autophagic Degradation Systems.
Ivan Dikic. Annu Rev Biochem 2017
524
9

The selective autophagy substrate p62 activates the stress responsive transcription factor Nrf2 through inactivation of Keap1.
Masaaki Komatsu, Hirofumi Kurokawa, Satoshi Waguri, Keiko Taguchi, Akira Kobayashi, Yoshinobu Ichimura, Yu-Shin Sou, Izumi Ueno, Ayako Sakamoto, Kit I Tong,[...]. Nat Cell Biol 2010
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.