A citation-based method for searching scientific literature

Rahul Metri, Sridhar Hariharaputran, Gayatri Ramakrishnan, Praveen Anand, Upadhyayula S Raghavender, Bernardo Ochoa-Montaño, Alicia P Higueruelo, Ramanathan Sowdhamini, Nagasuma R Chandra, Tom L Blundell, Narayanaswamy Srinivasan. Database (Oxford) 2015
Times Cited: 7







List of co-cited articles
13 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


TB database 2010: overview and update.
James E Galagan, Peter Sisk, Christian Stolte, Brian Weiner, Michael Koehrsen, Farrell Wymore, T B K Reddy, Jeremy D Zucker, Reinhard Engels, Marcel Gellesch,[...]. Tuberculosis (Edinb) 2010
89
42

Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.
S T Cole, R Brosch, J Parkhill, T Garnier, C Churcher, D Harris, S V Gordon, K Eiglmeier, S Gas, C E Barry,[...]. Nature 1998
42

TubercuList--10 years after.
Jocelyne M Lew, Adamandia Kapopoulou, Louis M Jones, Stewart T Cole. Tuberculosis (Edinb) 2011
306
42

PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species.
Joseph J Gillespie, Alice R Wattam, Stephen A Cammer, Joseph L Gabbard, Maulik P Shukla, Oral Dalay, Timothy Driscoll, Deborah Hix, Shrinivasrao P Mane, Chunhong Mao,[...]. Infect Immun 2011
181
28

Tuberculosis drug resistance mutation database.
Andreas Sandgren, Michael Strong, Preetika Muthukrishnan, Brian K Weiner, George M Church, Megan B Murray. PLoS Med 2009
377
28

The Mycobacterium tuberculosis drugome and its polypharmacological implications.
Sarah L Kinnings, Li Xie, Kingston H Fung, Richard M Jackson, Lei Xie, Philip E Bourne. PLoS Comput Biol 2010
74
28

MycoBASE: expanding the functional annotation coverage of mycobacterial genomes.
Benjamin J Garcia, Gargi Datta, Rebecca M Davidson, Michael Strong. BMC Genomics 2015
8
28

TDR Targets: a chemogenomics resource for neglected diseases.
María P Magariños, Santiago J Carmona, Gregory J Crowther, Stuart A Ralph, David S Roos, Dhanasekaran Shanmugam, Wesley C Van Voorhis, Fernán Agüero. Nucleic Acids Res 2012
75
28

CHOPIN: a web resource for the structural and functional proteome of Mycobacterium tuberculosis.
Bernardo Ochoa-Montaño, Nishita Mohan, Tom L Blundell. Database (Oxford) 2015
19
28

PIC: Protein Interactions Calculator.
K G Tina, R Bhadra, N Srinivasan. Nucleic Acids Res 2007
638
28

Knowledge-based protein modeling.
M S Johnson, N Srinivasan, R Sowdhamini, T L Blundell. Crit Rev Biochem Mol Biol 1994
163
28

Bioinformatic and mutational studies of related toxin-antitoxin pairs in Mycobacterium tuberculosis predict and identify key functional residues.
Himani Tandon, Arun Sharma, Saruchi Wadhwa, Raghavan Varadarajan, Ramandeep Singh, Narayanaswamy Srinivasan, Sankaran Sandhya. J Biol Chem 2019
15
28

Stereochemical Assessment of (φ,ψ) Outliers in Protein Structures Using Bond Geometry-Specific Ramachandran Steric-Maps.
Ashraya Ravikumar, Chandrasekharan Ramakrishnan, Narayanaswamy Srinivasan. Structure 2019
7
28

AgBase: a functional genomics resource for agriculture.
Fiona M McCarthy, Nan Wang, G Bryce Magee, Bindu Nanduri, Mark L Lawrence, Evelyn B Camon, Daniel G Barrell, David P Hill, Mary E Dolan, W Paul Williams,[...]. BMC Genomics 2006
201
14

PATRIC, the bacterial bioinformatics database and analysis resource.
Alice R Wattam, David Abraham, Oral Dalay, Terry L Disz, Timothy Driscoll, Joseph L Gabbard, Joseph J Gillespie, Roger Gough, Deborah Hix, Ronald Kenyon,[...]. Nucleic Acids Res 2014
799
14

Accelerated Profile HMM Searches.
Sean R Eddy. PLoS Comput Biol 2011
14


Genomic-scale prioritization of drug targets: the TDR Targets database.
Fernán Agüero, Bissan Al-Lazikani, Martin Aslett, Matthew Berriman, Frederick S Buckner, Robert K Campbell, Santiago Carmona, Ian M Carruthers, A W Edith Chan, Feng Chen,[...]. Nat Rev Drug Discov 2008
215
14

MycoCAP - Mycobacterium Comparative Analysis Platform.
Siew Woh Choo, Mia Yang Ang, Avirup Dutta, Shi Yang Tan, Cheuk Chuen Siow, Hamed Heydari, Naresh V R Mutha, Wei Yee Wee, Guat Jah Wong. Sci Rep 2015
3
33

Non mycobacterial virulence genes in the genome of the emerging pathogen Mycobacterium abscessus.
Fabienne Ripoll, Sophie Pasek, Chantal Schenowitz, Carole Dossat, Valérie Barbe, Martin Rottman, Edouard Macheras, Beate Heym, Jean-Louis Herrmann, Mamadou Daffé,[...]. PLoS One 2009
250
14


Antigen discovery: a postgenomic approach to leprosy diagnosis.
Romulo Aráoz, Nadine Honoré, Sungae Cho, Jong-Pill Kim, Sang-Nae Cho, Marc Monot, Caroline Demangel, Patrick J Brennan, Stewart T Cole. Infect Immun 2006
40
14

Shikimate kinase, a protein target for drug design.
J D Coracini, W F de Azevedo. Curr Med Chem 2014
25
14

Reconstructing the ancestor of Mycobacterium leprae: the dynamics of gene loss and genome reduction.
Laura Gómez-Valero, Eduardo P C Rocha, Amparo Latorre, Francisco J Silva. Genome Res 2007
78
14

Mycobacterium leprae: genes, pseudogenes and genetic diversity.
Pushpendra Singh, Stewart T Cole. Future Microbiol 2011
73
14

Pyrimidine salvage pathway in Mycobacterium tuberculosis.
A D Villela, Z A Sánchez-Quitian, R G Ducati, D S Santos, L A Basso. Curr Med Chem 2011
39
14

High Persister Mutants in Mycobacterium tuberculosis.
Heather L Torrey, Iris Keren, Laura E Via, Jong Seok Lee, Kim Lewis. PLoS One 2016
73
14

High-level expression of pseudogenes in Mycobacterium leprae.
Koichi Suzuki, Noboru Nakata, Pham Dang Bang, Norihisa Ishii, Masahiko Makino. FEMS Microbiol Lett 2006
31
14

Persister cells and tolerance to antimicrobials.
Iris Keren, Niilo Kaldalu, Amy Spoering, Yipeng Wang, Kim Lewis. FEMS Microbiol Lett 2004
663
14

Improved method for predicting linear B-cell epitopes.
Jens Erik Pontoppidan Larsen, Ole Lund, Morten Nielsen. Immunome Res 2006
736
14

Crowd sourcing a new paradigm for interactome driven drug target identification in Mycobacterium tuberculosis.
Rohit Vashisht, Anupam Kumar Mondal, Akanksha Jain, Anup Shah, Priti Vishnoi, Priyanka Priyadarshini, Kausik Bhattacharyya, Harsha Rohira, Ashwini G Bhat, Anurag Passi,[...]. PLoS One 2012
29
14

TuberQ: a Mycobacterium tuberculosis protein druggability database.
Leandro Radusky, Lucas A Defelipe, Esteban Lanzarotti, Javier Luque, Xavier Barril, Marcelo A Marti, Adrián G Turjanski. Database (Oxford) 2014
26
14

DNA repair in Mycobacterium tuberculosis revisited.
Tiago Dos Vultos, Olga Mestre, Tone Tonjum, Brigitte Gicquel. FEMS Microbiol Rev 2009
74
14

On the origin of Mycobacterium ulcerans, the causative agent of Buruli ulcer.
Kenneth D Doig, Kathryn E Holt, Janet A M Fyfe, Caroline J Lavender, Miriam Eddyani, Françoise Portaels, Dorothy Yeboah-Manu, Gerd Pluschke, Torsten Seemann, Timothy P Stinear. BMC Genomics 2012
89
14

Application of a subtractive genomics approach for in silico identification and characterization of novel drug targets in Mycobacterium tuberculosis F11.
Md Ismail Hosen, Arif Mohammad Tanmoy, Deena-Al Mahbuba, Umme Salma, Mohammad Nazim, Md Tariqul Islam, Sharif Akhteruzzaman. Interdiscip Sci 2014
32
14

Metabolic aspects of bacterial persisters.
Marcel Prax, Ralph Bertram. Front Cell Infect Microbiol 2014
69
14

The Pfam protein families database: towards a more sustainable future.
Robert D Finn, Penelope Coggill, Ruth Y Eberhardt, Sean R Eddy, Jaina Mistry, Alex L Mitchell, Simon C Potter, Marco Punta, Matloob Qureshi, Amaia Sangrador-Vegas,[...]. Nucleic Acids Res 2016
14


Proteinortho: detection of (co-)orthologs in large-scale analysis.
Marcus Lechner, Sven Findeiss, Lydia Steiner, Manja Marz, Peter F Stadler, Sonja J Prohaska. BMC Bioinformatics 2011
710
14

Towards an immunodiagnostic test for leprosy.
Romulo Aráoz, Nadine Honoré, Sayera Banu, Caroline Demangel, Yakouba Cissoko, Charles Arama, Mohammad Khaja Mafij Uddin, S K Abdul Hadi, Marc Monot, Sang-Nae Cho,[...]. Microbes Infect 2006
36
14

Massive gene decay in the leprosy bacillus.
S T Cole, K Eiglmeier, J Parkhill, K D James, N R Thomson, P R Wheeler, N Honoré, T Garnier, C Churcher, D Harris,[...]. Nature 2001
14


Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis.
Timothy P Stinear, Torsten Seemann, Paul F Harrison, Grant A Jenkin, John K Davies, Paul D R Johnson, Zahra Abdellah, Claire Arrowsmith, Tracey Chillingworth, Carol Churcher,[...]. Genome Res 2008
362
14

The X-ray structure of Salmonella typhimurium uridine nucleoside phosphorylase complexed with 2,2'-anhydrouridine, phosphate and potassium ions at 1.86 A resolution.
Alexander A Lashkov, Nadezhda E Zhukhlistova, Azat H Gabdoulkhakov, Alexander A Shtil, Roman G Efremov, Christian Betzel, Al'bert M Mikhailov. Acta Crystallogr D Biol Crystallogr 2010
10
14

Analysis of the genome of Mycobacterium tuberculosis H37Rv.
S T Cole, B G Barrell. Novartis Found Symp 1998
69
14

Non-tuberculous mycobacteria in children: muddying the waters of tuberculosis diagnosis.
Elisa López-Varela, Alberto L García-Basteiro, Begoña Santiago, Dirk Wagner, Jakko van Ingen, Beate Kampmann. Lancet Respir Med 2015
43
14

Nontuberculous Mycobacterial Disease in Children - Epidemiology, Diagnosis & Management at a Tertiary Center.
Marc Tebruegge, Anastasia Pantazidou, Duncan MacGregor, Gena Gonis, David Leslie, Luigi Sedda, Nicole Ritz, Tom Connell, Nigel Curtis. PLoS One 2016
50
14

The pseudogenes of Mycobacterium leprae reveal the functional relevance of gene order within operons.
Enrique M Muro, Nancy Mah, Gabriel Moreno-Hagelsieb, Miguel A Andrade-Navarro. Nucleic Acids Res 2011
10
14

Implications of high level pseudogene transcription in Mycobacterium leprae.
Diana L Williams, Richard A Slayden, Amol Amin, Alejandra N Martinez, Tana L Pittman, Alex Mira, Anirban Mitra, Valakunja Nagaraja, Norman E Morrison, Milton Moraes,[...]. BMC Genomics 2009
32
14

Increasing the structural coverage of tuberculosis drug targets.
Loren Baugh, Isabelle Phan, Darren W Begley, Matthew C Clifton, Brianna Armour, David M Dranow, Brandy M Taylor, Marvin M Muruthi, Jan Abendroth, James W Fairman,[...]. Tuberculosis (Edinb) 2015
74
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.