A citation-based method for searching scientific literature

Andrea Rossi, Zacharias Kontarakis, Claudia Gerri, Hendrik Nolte, Soraya Hölper, Marcus Krüger, Didier Y R Stainier. Nature 2015
Times Cited: 654







List of co-cited articles
325 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genetic compensation triggered by mutant mRNA degradation.
Mohamed A El-Brolosy, Zacharias Kontarakis, Andrea Rossi, Carsten Kuenne, Stefan Günther, Nana Fukuda, Khrievono Kikhi, Giulia L M Boezio, Carter M Takacs, Shih-Lei Lai,[...]. Nature 2019
310
43

Reverse genetic screening reveals poor correlation between morpholino-induced and mutant phenotypes in zebrafish.
F O Kok, M Shin, C-W Ni, A Gupta, A S Grosse, A van Impel, B C Kirchmaier, J Peterson-Maduro, G Kourkoulis, I Male,[...]. Dev Cell 2015
459
23

PTC-bearing mRNA elicits a genetic compensation response via Upf3a and COMPASS components.
Zhipeng Ma, Peipei Zhu, Hui Shi, Liwei Guo, Qinghe Zhang, Yanan Chen, Shuming Chen, Zhe Zhang, Jinrong Peng, Jun Chen. Nature 2019
158
21

Genetic compensation: A phenomenon in search of mechanisms.
Mohamed A El-Brolosy, Didier Y R Stainier. PLoS Genet 2017
288
18

Stages of embryonic development of the zebrafish.
C B Kimmel, W W Ballard, S R Kimmel, B Ullmann, T F Schilling. Dev Dyn 1995
17

p53 activation by knockdown technologies.
Mara E Robu, Jon D Larson, Aidas Nasevicius, Soraya Beiraghi, Charles Brenner, Steven A Farber, Stephen C Ekker. PLoS Genet 2007
774
11

Guidelines for morpholino use in zebrafish.
Didier Y R Stainier, Erez Raz, Nathan D Lawson, Stephen C Ekker, Rebecca D Burdine, Judith S Eisen, Philip W Ingham, Stefan Schulte-Merker, Deborah Yelon, Brant M Weinstein,[...]. PLoS Genet 2017
151
9

Efficient multiplex biallelic zebrafish genome editing using a CRISPR nuclease system.
Li-En Jao, Susan R Wente, Wenbiao Chen. Proc Natl Acad Sci U S A 2013
722
9

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
7

Efficient genome editing in zebrafish using a CRISPR-Cas system.
Woong Y Hwang, Yanfang Fu, Deepak Reyon, Morgan L Maeder, Shengdar Q Tsai, Jeffry D Sander, Randall T Peterson, J-R Joanna Yeh, J Keith Joung. Nat Biotechnol 2013
7

A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.
Martin Jinek, Krzysztof Chylinski, Ines Fonfara, Michael Hauer, Jennifer A Doudna, Emmanuelle Charpentier. Science 2012
6

The zebrafish reference genome sequence and its relationship to the human genome.
Kerstin Howe, Matthew D Clark, Carlos F Torroja, James Torrance, Camille Berthelot, Matthieu Muffato, John E Collins, Sean Humphray, Karen McLaren, Lucy Matthews,[...]. Nature 2013
6

A systematic genome-wide analysis of zebrafish protein-coding gene function.
Ross N W Kettleborough, Elisabeth M Busch-Nentwich, Steven A Harvey, Christopher M Dooley, Ewart de Bruijn, Freek van Eeden, Ian Sealy, Richard J White, Colin Herd, Isaac J Nijman,[...]. Nature 2013
349
6

High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9.
Gaurav K Varshney, Wuhong Pei, Matthew C LaFave, Jennifer Idol, Lisha Xu, Viviana Gallardo, Blake Carrington, Kevin Bishop, MaryPat Jones, Mingyu Li,[...]. Genome Res 2015
243
6

Multiplex genome engineering using CRISPR/Cas systems.
Le Cong, F Ann Ran, David Cox, Shuailiang Lin, Robert Barretto, Naomi Habib, Patrick D Hsu, Xuebing Wu, Wenyan Jiang, Luciano A Marraffini,[...]. Science 2013
5


Effective targeted gene 'knockdown' in zebrafish.
A Nasevicius, S C Ekker. Nat Genet 2000
5

A Rapid Method for Directed Gene Knockout for Screening in G0 Zebrafish.
Roland S Wu, Ian I Lam, Hilary Clay, Daniel N Duong, Rahul C Deo, Shaun R Coughlin. Dev Cell 2018
85
5

Reverse genetics in zebrafish by TILLING.
Cecilia B Moens, Thomas M Donn, Emma R Wolf-Saxon, Taylur P Ma. Brief Funct Genomic Proteomic 2008
134
5

Short body length phenotype is compensated by the upregulation of nidogen family members in a deleterious nid1a mutation of zebrafish.
Peipei Zhu, Zhipeng Ma, Liwei Guo, Wei Zhang, Qinghe Zhang, Ting Zhao, Kunpeng Jiang, Jinrong Peng, Jun Chen. J Genet Genomics 2017
21
23

RNA-guided human genome engineering via Cas9.
Prashant Mali, Luhan Yang, Kevin M Esvelt, John Aach, Marc Guell, James E DiCarlo, Julie E Norville, George M Church. Science 2013
5

Validation of zebrafish (Danio rerio) reference genes for quantitative real-time RT-PCR normalization.
Rongying Tang, Andrew Dodd, Daniel Lai, Warren C McNabb, Donald R Love. Acta Biochim Biophys Sin (Shanghai) 2007
416
5

Rapid reverse genetic screening using CRISPR in zebrafish.
Arish N Shah, Crystal F Davey, Alex C Whitebirch, Adam C Miller, Cecilia B Moens. Nat Methods 2015
175
5



Making sense of anti-sense data.
Didier Y R Stainier, Zacharias Kontarakis, Andrea Rossi. Dev Cell 2015
74
5

Targeted gene disruption in somatic zebrafish cells using engineered TALENs.
Jeffry D Sander, Lindsay Cade, Cyd Khayter, Deepak Reyon, Randall T Peterson, J Keith Joung, Jing-Ruey J Yeh. Nat Biotechnol 2011
409
4

Efficient CRISPR/Cas9 genome editing with low off-target effects in zebrafish.
Alexander Hruscha, Peter Krawitz, Alexandra Rechenberg, Verena Heinrich, Jochen Hecht, Christian Haass, Bettina Schmid. Development 2013
290
4


Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9.
John G Doench, Nicolo Fusi, Meagan Sullender, Mudra Hegde, Emma W Vaimberg, Katherine F Donovan, Ian Smith, Zuzana Tothova, Craig Wilen, Robert Orchard,[...]. Nat Biotechnol 2016
4

Transcriptional and phenotypic comparisons of Ppara knockout and siRNA knockdown mice.
Angus T De Souza, Xudong Dai, Andrew G Spencer, Tom Reppen, Ann Menzie, Paula L Roesch, Yudong He, Michelle J Caguyong, Sherri Bloomer, Hans Herweijer,[...]. Nucleic Acids Res 2006
75
5

Transcriptional adaptation: a mechanism underlying genetic robustness.
Tamar E Sztal, Didier Y R Stainier. Development 2020
7
57

Transcriptional adaptation in Caenorhabditis elegans.
Vahan Serobyan, Zacharias Kontarakis, Mohamed A El-Brolosy, Jordan M Welker, Oleg Tolstenkov, Amr M Saadeldein, Nicholas Retzer, Alexander Gottschalk, Ann M Wehman, Didier Yr Stainier. Elife 2020
8
50

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
4

Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.
A Fire, S Xu, M K Montgomery, S A Kostas, S E Driver, C C Mello. Nature 1998
3

Heritable and precise zebrafish genome editing using a CRISPR-Cas system.
Woong Y Hwang, Yanfang Fu, Deepak Reyon, Morgan L Maeder, Prakriti Kaini, Jeffry D Sander, J Keith Joung, Randall T Peterson, Jing-Ruey Joanna Yeh. PLoS One 2013
240
3

Heritable gene targeting in zebrafish using customized TALENs.
Peng Huang, An Xiao, Mingguo Zhou, Zuoyan Zhu, Shuo Lin, Bo Zhang. Nat Biotechnol 2011
466
3

A genetic screen for mutations affecting embryogenesis in zebrafish.
W Driever, L Solnica-Krezel, A F Schier, S C Neuhauss, J Malicki, D L Stemple, D Y Stainier, F Zwartkruis, S Abdelilah, Z Rangini,[...]. Development 1996
921
3


The use of RNAi technologies for gene knockdown in zebrafish.
Amanda Kelly, Adam F Hurlstone. Brief Funct Genomics 2011
26
11

Highly efficient CRISPR/Cas9-mediated knock-in in zebrafish by homology-independent DNA repair.
Thomas O Auer, Karine Duroure, Anne De Cian, Jean-Paul Concordet, Filippo Del Bene. Genome Res 2014
375
3

Generation and characterization of FMR1 knockout zebrafish.
Marjo J den Broeder, Herma van der Linde, Judith R Brouwer, Ben A Oostra, Rob Willemsen, René F Ketting. PLoS One 2009
55
5



Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases.
Yannick Doyon, Jasmine M McCammon, Jeffrey C Miller, Farhoud Faraji, Catherine Ngo, George E Katibah, Rainier Amora, Toby D Hocking, Lei Zhang, Edward J Rebar,[...]. Nat Biotechnol 2008
595
3

Maximizing mutagenesis with solubilized CRISPR-Cas9 ribonucleoprotein complexes.
Alexa Burger, Helen Lindsay, Anastasia Felker, Christopher Hess, Carolin Anders, Elena Chiavacci, Jonas Zaugg, Lukas M Weber, Raul Catena, Martin Jinek,[...]. Development 2016
127
3

Genetic compensation in a stable slc25a46 mutant zebrafish: A case for using F0 CRISPR mutagenesis to study phenotypes caused by inherited disease.
Elena Buglo, Evan Sarmiento, Nicole Belliard Martuscelli, David W Sant, Matt C Danzi, Alexander J Abrams, Julia E Dallman, Stephan Züchner. PLoS One 2020
8
37

The Tol2kit: a multisite gateway-based construction kit for Tol2 transposon transgenesis constructs.
Kristen M Kwan, Esther Fujimoto, Clemens Grabher, Benjamin D Mangum, Melissa E Hardy, Douglas S Campbell, John M Parant, H Joseph Yost, John P Kanki, Chi-Bin Chien. Dev Dyn 2007
3

Natural Variation in Gene Expression Modulates the Severity of Mutant Phenotypes.
Victoria Vu, Adrian J Verster, Michael Schertzberg, Tungalag Chuluunbaatar, Mark Spensley, Djina Pajkic, G Traver Hart, Jason Moffat, Andrew G Fraser. Cell 2015
65
4

Mutations in the CEP290 (NPHP6) gene are a frequent cause of Leber congenital amaurosis.
Anneke I den Hollander, Robert K Koenekoop, Suzanne Yzer, Irma Lopez, Maarten L Arends, Krysta E J Voesenek, Marijke N Zonneveld, Tim M Strom, Thomas Meitinger, Han G Brunner,[...]. Am J Hum Genet 2006
430
3


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.