A citation-based method for searching scientific literature

Jun Ding, Carlo Sidore, Thomas J Butler, Mary Kate Wing, Yong Qian, Osorio Meirelles, Fabio Busonero, Lam C Tsoi, Andrea Maschio, Andrea Angius, Hyun Min Kang, Ramaiah Nagaraja, Francesco Cucca, Gonçalo R Abecasis, David Schlessinger. PLoS Genet 2015
Times Cited: 56







List of co-cited articles
490 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Mitochondrial DNA copy number in peripheral blood cells declines with age and is associated with general health among elderly.
Jonas Mengel-From, Mikael Thinggaard, Christine Dalgård, Kirsten Ohm Kyvik, Kaare Christensen, Lene Christiansen. Hum Genet 2014
164
33

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
26

Age-Related and Heteroplasmy-Related Variation in Human mtDNA Copy Number.
Manja Wachsmuth, Alexander Hübner, Mingkun Li, Burkhard Madea, Mark Stoneking. PLoS Genet 2016
75
26

Extensive pathogenicity of mitochondrial heteroplasmy in healthy human individuals.
Kaixiong Ye, Jian Lu, Fei Ma, Alon Keinan, Zhenglong Gu. Proc Natl Acad Sci U S A 2014
135
25


Extensive tissue-related and allele-related mtDNA heteroplasmy suggests positive selection for somatic mutations.
Mingkun Li, Roland Schröder, Shengyu Ni, Burkhard Madea, Mark Stoneking. Proc Natl Acad Sci U S A 2015
100
23

Heteroplasmic mitochondrial DNA mutations in normal and tumour cells.
Yiping He, Jian Wu, Devin C Dressman, Christine Iacobuzio-Donahue, Sanford D Markowitz, Victor E Velculescu, Luis A Diaz, Kenneth W Kinzler, Bert Vogelstein, Nickolas Papadopoulos. Nature 2010
368
19

Correlates of Peripheral Blood Mitochondrial DNA Content in a General Population.
Judita Knez, Ellen Winckelmans, Michelle Plusquin, Lutgarde Thijs, Nicholas Cauwenberghs, Yumei Gu, Jan A Staessen, Tim S Nawrot, Tatiana Kuznetsova. Am J Epidemiol 2016
53
20


Genetic Control over mtDNA and Its Relationship to Major Depressive Disorder.
Na Cai, Yihan Li, Simon Chang, Jieqin Liang, Chongyun Lin, Xiufei Zhang, Lu Liang, Jingchu Hu, Wharton Chan, Kenneth S Kendler,[...]. Curr Biol 2015
43
23

Adjusting MtDNA Quantification in Whole Blood for Peripheral Blood Platelet and Leukocyte Counts.
Yamilee Hurtado-Roca, Marta Ledesma, Monica Gonzalez-Lazaro, Raquel Moreno-Loshuertos, Patricio Fernandez-Silva, Jose Antonio Enriquez, Martin Laclaustra. PLoS One 2016
39
25

Molecular signatures of major depression.
Na Cai, Simon Chang, Yihan Li, Qibin Li, Jingchu Hu, Jieqin Liang, Li Song, Warren Kretzschmar, Xiangchao Gan, Jerome Nicod,[...]. Curr Biol 2015
146
16

Detecting heteroplasmy from high-throughput sequencing of complete human mitochondrial DNA genomes.
Mingkun Li, Anna Schönberg, Michael Schaefer, Roland Schroeder, Ivane Nasidze, Mark Stoneking. Am J Hum Genet 2010
199
16

HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing.
Hansi Weissensteiner, Dominic Pacher, Anita Kloss-Brandstätter, Lukas Forer, Günther Specht, Hans-Jürgen Bandelt, Florian Kronenberg, Antonio Salas, Sebastian Schönherr. Nucleic Acids Res 2016
300
16

Association of mitochondrial DNA levels with frailty and all-cause mortality.
Foram N Ashar, Anna Moes, Ann Z Moore, Megan L Grove, Paulo H M Chaves, Josef Coresh, Anne B Newman, Amy M Matteini, Karen Bandeen-Roche, Eric Boerwinkle,[...]. J Mol Med (Berl) 2015
89
16

Association of Mitochondrial DNA Copy Number With Cardiovascular Disease.
Foram N Ashar, Yiyi Zhang, Ryan J Longchamps, John Lane, Anna Moes, Megan L Grove, Josyf C Mychaleckyj, Kent D Taylor, Josef Coresh, Jerome I Rotter,[...]. JAMA Cardiol 2017
78
16

Mitochondrial DNA genetics and the heteroplasmy conundrum in evolution and disease.
Douglas C Wallace, Dimitra Chalkia. Cold Spring Harb Perspect Biol 2013
325
14

Universal heteroplasmy of human mitochondrial DNA.
Brendan A I Payne, Ian J Wilson, Patrick Yu-Wai-Man, Jonathan Coxhead, David Deehan, Rita Horvath, Robert W Taylor, David C Samuels, Mauro Santibanez-Koref, Patrick F Chinnery. Hum Mol Genet 2013
233
14

Association between Mitochondrial DNA Copy Number in Peripheral Blood and Incident CKD in the Atherosclerosis Risk in Communities Study.
Adrienne Tin, Morgan E Grams, Foram N Ashar, John A Lane, Avi Z Rosenberg, Megan L Grove, Eric Boerwinkle, Elizabeth Selvin, Josef Coresh, Nathan Pankratz,[...]. J Am Soc Nephrol 2016
61
14

Reduced mitochondrial DNA copy number is a biomarker of Parkinson's disease.
Angela Pyle, Haidyan Anugrha, Marzena Kurzawa-Akanbi, Alison Yarnall, David Burn, Gavin Hudson. Neurobiol Aging 2016
107
14

Evaluation of mitochondrial DNA copy number estimation techniques.
Ryan J Longchamps, Christina A Castellani, Stephanie Y Yang, Charles E Newcomb, Jason A Sumpter, John Lane, Megan L Grove, Eliseo Guallar, Nathan Pankratz, Kent D Taylor,[...]. PLoS One 2020
20
40

Number matters: control of mammalian mitochondrial DNA copy number.
Laura L Clay Montier, Janice J Deng, Yidong Bai. J Genet Genomics 2009
305
12

Recurrent tissue-specific mtDNA mutations are common in humans.
David C Samuels, Chun Li, Bingshan Li, Zhuo Song, Eric Torstenson, Hayley Boyd Clay, Antonis Rokas, Tricia A Thornton-Wells, Jason H Moore, Tia M Hughes,[...]. PLoS Genet 2013
89
12

Precise determination of mitochondrial DNA copy number in human skeletal and cardiac muscle by a PCR-based assay: lack of change of copy number with age.
Francis J Miller, Franklin L Rosenfeldt, Chunfang Zhang, Anthony W Linnane, Phillip Nagley. Nucleic Acids Res 2003
215
12


mtDNA-Server: next-generation sequencing data analysis of human mitochondrial DNA in the cloud.
Hansi Weissensteiner, Lukas Forer, Christian Fuchsberger, Bernd Schöpf, Anita Kloss-Brandstätter, Günther Specht, Florian Kronenberg, Sebastian Schönherr. Nucleic Acids Res 2016
68
12

mtDNA Variation and Analysis Using Mitomap and Mitomaster.
Marie T Lott, Jeremy N Leipzig, Olga Derbeneva, H Michael Xie, Dimitra Chalkia, Mahdi Sarmady, Vincent Procaccio, Douglas C Wallace. Curr Protoc Bioinformatics 2013
233
12

HaploGrep: a fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups.
Anita Kloss-Brandstätter, Dominic Pacher, Sebastian Schönherr, Hansi Weissensteiner, Robert Binna, Günther Specht, Florian Kronenberg. Hum Mutat 2011
298
12

Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA.
R M Andrews, I Kubacka, P F Chinnery, R N Lightowlers, D M Turnbull, N Howell. Nat Genet 1999
12

Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA.
Boris Rebolledo-Jaramillo, Marcia Shu-Wei Su, Nicholas Stoler, Jennifer A McElhoe, Benjamin Dickins, Daniel Blankenberg, Thorfinn S Korneliussen, Francesca Chiaromonte, Rasmus Nielsen, Mitchell M Holland,[...]. Proc Natl Acad Sci U S A 2014
117
12

Mitochondrial DNA mutations in human disease.
Robert W Taylor, Doug M Turnbull. Nat Rev Genet 2005
12

Decreased mitochondrial DNA content in peripheral blood precedes the development of non-insulin-dependent diabetes mellitus.
H K Lee, J H Song, C S Shin, D J Park, K S Park, K U Lee, C S Koh. Diabetes Res Clin Pract 1998
157
12

Mitochondrial DNA copy number variation across human cancers.
Ed Reznik, Martin L Miller, Yasin Şenbabaoğlu, Nadeem Riaz, Judy Sarungbam, Satish K Tickoo, Hikmat A Al-Ahmadie, William Lee, Venkatraman E Seshan, A Ari Hakimi,[...]. Elife 2016
214
12

fastMitoCalc: an ultra-fast program to estimate mitochondrial DNA copy number from whole-genome sequences.
Yong Qian, Thomas J Butler, Krista Opsahl-Ong, Nicholas S Giroux, Carlo Sidore, Ramaiah Nagaraja, Francesco Cucca, Luigi Ferrucci, Gonçalo R Abecasis, David Schlessinger,[...]. Bioinformatics 2017
10
70


DNA extraction procedures meaningfully influence qPCR-based mtDNA copy number determination.
Wen Guo, Lan Jiang, Shalender Bhasin, Shaharyar M Khan, Russell H Swerdlow. Mitochondrion 2009
108
10

Sequence and organization of the human mitochondrial genome.
S Anderson, A T Bankier, B G Barrell, M H de Bruijn, A R Coulson, J Drouin, I C Eperon, D P Nierlich, B A Roe, F Sanger,[...]. Nature 1981
10

Progressive increase in mtDNA 3243A>G heteroplasmy causes abrupt transcriptional reprogramming.
Martin Picard, Jiangwen Zhang, Saege Hancock, Olga Derbeneva, Ryan Golhar, Pawel Golik, Sean O'Hearn, Shawn Levy, Prasanth Potluri, Maria Lvova,[...]. Proc Natl Acad Sci U S A 2014
160
10

Association between leukocyte mitochondrial DNA content and risk of coronary heart disease: a case-control study.
Shuying Chen, Xuejian Xie, Yujing Wang, Yan Gao, Xiaoli Xie, Jing Yang, Jixian Ye. Atherosclerosis 2014
39
15

Distinct genomic copy number in mitochondria of different mammalian organs.
K L Veltri, M Espiritu, G Singh. J Cell Physiol 1990
148
10

Independent impacts of aging on mitochondrial DNA quantity and quality in humans.
Ruoyu Zhang, Yiqin Wang, Kaixiong Ye, Martin Picard, Zhenglong Gu. BMC Genomics 2017
47
12

mtDNA heteroplasmy level and copy number indicate disease burden in m.3243A>G mitochondrial disease.
John P Grady, Sarah J Pickett, Yi Shiau Ng, Charlotte L Alston, Emma L Blakely, Steven A Hardy, Catherine L Feeney, Alexandra A Bright, Andrew M Schaefer, Gráinne S Gorman,[...]. EMBO Mol Med 2018
88
10

Molecular poltergeists: mitochondrial DNA copies (numts) in sequenced nuclear genomes.
Einat Hazkani-Covo, Raymond M Zeller, William Martin. PLoS Genet 2010
320
8

Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer.
Young Seok Ju, Ludmil B Alexandrov, Moritz Gerstung, Inigo Martincorena, Serena Nik-Zainal, Manasa Ramakrishna, Helen R Davies, Elli Papaemmanuil, Gunes Gundem, Adam Shlien,[...]. Elife 2014
203
8


Evidence for frequent and tissue-specific sequence heteroplasmy in human mitochondrial DNA.
Jana Naue, Steffen Hörer, Timo Sänger, Christina Strobl, Petra Hatzer-Grubwieser, Walther Parson, Sabine Lutz-Bonengel. Mitochondrion 2015
53
9

Mitochondrial DNA heteroplasmy in the emerging field of massively parallel sequencing.
Rebecca S Just, Jodi A Irwin, Walther Parson. Forensic Sci Int Genet 2015
69
8

Correction: Assessing Mitochondrial DNA Variation and Copy Number in Lymphocytes of ~2,000 Sardinians Using Tailored Sequencing Analysis Tools.
Jun Ding, Carlo Sidore, Thomas J Butler, Mary Kate Wing, Yong Qian, Osorio Meirelles, Fabio Busonero, Lam C Tsoi, Andrea Maschio, Andrea Angius,[...]. PLoS Genet 2015
10
50

MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing.
Claudia Calabrese, Domenico Simone, Maria Angela Diroma, Mariangela Santorsola, Cristiano Guttà, Giuseppe Gasparre, Ernesto Picardi, Graziano Pesole, Marcella Attimonelli. Bioinformatics 2014
101
8



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.