A citation-based method for searching scientific literature

Carole J Henry Dunand, Patrick C Wilson. Philos Trans R Soc Lond B Biol Sci 2015
Times Cited: 62







List of co-cited articles
709 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Human responses to influenza vaccination show seroconversion signatures and convergent antibody rearrangements.
Katherine J L Jackson, Yi Liu, Krishna M Roskin, Jacob Glanville, Ramona A Hoh, Katie Seo, Eleanor L Marshall, Thaddeus C Gurley, M Anthony Moody, Barton F Haynes,[...]. Cell Host Microbe 2014
168
45

Convergent antibody signatures in human dengue.
Poornima Parameswaran, Yi Liu, Krishna M Roskin, Katherine K L Jackson, Vaishali P Dixit, Ji-Yeun Lee, Karen L Artiles, Simona Zompi, Maria José Vargas, Birgitte B Simen,[...]. Cell Host Microbe 2013
182
38

Antibody recognition of a highly conserved influenza virus epitope.
Damian C Ekiert, Gira Bhabha, Marc-André Elsliger, Robert H E Friesen, Mandy Jongeneelen, Mark Throsby, Jaap Goudsmit, Ian A Wilson. Science 2009
989
29

Structural and functional bases for broad-spectrum neutralization of avian and human influenza A viruses.
Jianhua Sui, William C Hwang, Sandra Perez, Ge Wei, Daniel Aird, Li-mei Chen, Eugenio Santelli, Boguslaw Stec, Greg Cadwell, Maryam Ali,[...]. Nat Struct Mol Biol 2009
928
27

IgBLAST: an immunoglobulin variable domain sequence analysis tool.
Jian Ye, Ning Ma, Thomas L Madden, James M Ostell. Nucleic Acids Res 2013
622
25

Vaccine-Induced Antibodies that Neutralize Group 1 and Group 2 Influenza A Viruses.
M Gordon Joyce, Adam K Wheatley, Paul V Thomas, Gwo-Yu Chuang, Cinque Soto, Robert T Bailer, Aliaksandr Druz, Ivelin S Georgiev, Rebecca A Gillespie, Masaru Kanekiyo,[...]. Cell 2016
202
25

Identification of antigen-specific B cell receptor sequences using public repertoire analysis.
Johannes Trück, Maheshi N Ramasamy, Jacob D Galson, Richard Rance, Julian Parkhill, Gerton Lunter, Andrew J Pollard, Dominic F Kelly. J Immunol 2015
78
24

Focused evolution of HIV-1 neutralizing antibodies revealed by structures and deep sequencing.
Xueling Wu, Tongqing Zhou, Jiang Zhu, Baoshan Zhang, Ivelin Georgiev, Charlene Wang, Xuejun Chen, Nancy S Longo, Mark Louder, Krisha McKee,[...]. Science 2011
666
24

Rapid development of broadly influenza neutralizing antibodies through redundant mutations.
Leontios Pappas, Mathilde Foglierini, Luca Piccoli, Nicole L Kallewaard, Filippo Turrini, Chiara Silacci, Blanca Fernandez-Rodriguez, Gloria Agatic, Isabella Giacchetto-Sasselli, Gabriele Pellicciotta,[...]. Nature 2014
212
24

Molecular signatures of hemagglutinin stem-directed heterosubtypic human neutralizing antibodies against influenza A viruses.
Yuval Avnir, Aimee S Tallarico, Quan Zhu, Andrew S Bennett, Gene Connelly, Jared Sheehan, Jianhua Sui, Amr Fahmy, Chiung-yu Huang, Greg Cadwell,[...]. PLoS Pathog 2014
87
22

The promise and challenge of high-throughput sequencing of the antibody repertoire.
George Georgiou, Gregory C Ippolito, John Beausang, Christian E Busse, Hedda Wardemann, Stephen R Quake. Nat Biotechnol 2014
420
20


H5N1 Vaccine-Elicited Memory B Cells Are Genetically Constrained by the IGHV Locus in the Recognition of a Neutralizing Epitope in the Hemagglutinin Stem.
Adam K Wheatley, James R R Whittle, Daniel Lingwood, Masaru Kanekiyo, Hadi M Yassine, Steven S Ma, Sandeep R Narpala, Madhu S Prabhakaran, Rodrigo A Matus-Nicodemos, Robert T Bailer,[...]. J Immunol 2015
72
19

IGHV1-69 polymorphism modulates anti-influenza antibody repertoires, correlates with IGHV utilization shifts and varies by ethnicity.
Yuval Avnir, Corey T Watson, Jacob Glanville, Eric C Peterson, Aimee S Tallarico, Andrew S Bennett, Kun Qin, Ying Fu, Chiung-Yu Huang, John H Beigel,[...]. Sci Rep 2016
99
19

Convergent antibody responses to SARS-CoV-2 in convalescent individuals.
Davide F Robbiani, Christian Gaebler, Frauke Muecksch, Julio C C Lorenzi, Zijun Wang, Alice Cho, Marianna Agudelo, Christopher O Barnes, Anna Gazumyan, Shlomo Finkin,[...]. Nature 2020
19

Inferring processes underlying B-cell repertoire diversity.
Yuval Elhanati, Zachary Sethna, Quentin Marcou, Curtis G Callan, Thierry Mora, Aleksandra M Walczak. Philos Trans R Soc Lond B Biol Sci 2015
99
17

Structural and genetic basis for development of broadly neutralizing influenza antibodies.
Daniel Lingwood, Patrick M McTamney, Hadi M Yassine, James R R Whittle, Xiaoti Guo, Jeffrey C Boyington, Chih-Jen Wei, Gary J Nabel. Nature 2012
191
17

Broadly cross-reactive antibodies dominate the human B cell response against 2009 pandemic H1N1 influenza virus infection.
Jens Wrammert, Dimitrios Koutsonanos, Gui-Mei Li, Srilatha Edupuganti, Jianhua Sui, Michael Morrissey, Megan McCausland, Ioanna Skountzou, Mady Hornig, W Ian Lipkin,[...]. J Exp Med 2011
634
16

Complete haplotype sequence of the human immunoglobulin heavy-chain variable, diversity, and joining genes and characterization of allelic and copy-number variation.
Corey T Watson, Karyn M Steinberg, John Huddleston, Rene L Warren, Maika Malig, Jacqueline Schein, A Jeremy Willsey, Jeffrey B Joy, Jamie K Scott, Tina A Graves,[...]. Am J Hum Genet 2013
140
16

Highly conserved protective epitopes on influenza B viruses.
Cyrille Dreyfus, Nick S Laursen, Ted Kwaks, David Zuijdgeest, Reza Khayat, Damian C Ekiert, Jeong Hyun Lee, Zoltan Metlagel, Miriam V Bujny, Mandy Jongeneelen,[...]. Science 2012
549
16

Structural Repertoire of HIV-1-Neutralizing Antibodies Targeting the CD4 Supersite in 14 Donors.
Tongqing Zhou, Rebecca M Lynch, Lei Chen, Priyamvada Acharya, Xueling Wu, Nicole A Doria-Rose, M Gordon Joyce, Daniel Lingwood, Cinque Soto, Robert T Bailer,[...]. Cell 2015
225
16


Heterosubtypic neutralizing antibodies are produced by individuals immunized with a seasonal influenza vaccine.
Davide Corti, Amorsolo L Suguitan, Debora Pinna, Chiara Silacci, Blanca M Fernandez-Rodriguez, Fabrizia Vanzetta, Celia Santos, Catherine J Luke, Fernando J Torres-Velez, Nigel J Temperton,[...]. J Clin Invest 2010
353
14

Multidonor analysis reveals structural elements, genetic determinants, and maturation pathway for HIV-1 neutralization by VRC01-class antibodies.
Tongqing Zhou, Jiang Zhu, Xueling Wu, Stephanie Moquin, Baoshan Zhang, Priyamvada Acharya, Ivelin S Georgiev, Han R Altae-Tran, Gwo-Yu Chuang, M Gordon Joyce,[...]. Immunity 2013
258
14

MiXCR: software for comprehensive adaptive immunity profiling.
Dmitriy A Bolotin, Stanislav Poslavsky, Igor Mitrophanov, Mikhail Shugay, Ilgar Z Mamedov, Ekaterina V Putintseva, Dmitriy M Chudakov. Nat Methods 2015
750
14

Immune history profoundly affects broadly protective B cell responses to influenza.
Sarah F Andrews, Yunping Huang, Kaval Kaur, Lyubov I Popova, Irvin Y Ho, Noel T Pauli, Carole J Henry Dunand, William M Taylor, Samuel Lim, Min Huang,[...]. Sci Transl Med 2015
260
14

Hemagglutinin-stem nanoparticles generate heterosubtypic influenza protection.
Hadi M Yassine, Jeffrey C Boyington, Patrick M McTamney, Chih-Jen Wei, Masaru Kanekiyo, Wing-Pui Kong, John R Gallagher, Lingshu Wang, Yi Zhang, M Gordon Joyce,[...]. Nat Med 2015
432
14

Structure and Function Analysis of an Antibody Recognizing All Influenza A Subtypes.
Nicole L Kallewaard, Davide Corti, Patrick J Collins, Ursula Neu, Josephine M McAuliffe, Ebony Benjamin, Leslie Wachter-Rosati, Frances J Palmer-Hill, Andy Q Yuan, Philip A Walker,[...]. Cell 2016
236
14

Multi-Donor Longitudinal Antibody Repertoire Sequencing Reveals the Existence of Public Antibody Clonotypes in HIV-1 Infection.
Ian Setliff, Wyatt J McDonnell, Nagarajan Raju, Robin G Bombardi, Amyn A Murji, Cathrine Scheepers, Rutendo Ziki, Charissa Mynhardt, Bryan E Shepherd, Alusha A Mamchak,[...]. Cell Host Microbe 2018
54
16

Pandemic H1N1 influenza vaccine induces a recall response in humans that favors broadly cross-reactive memory B cells.
Gui-Mei Li, Christopher Chiu, Jens Wrammert, Megan McCausland, Sarah F Andrews, Nai-Ying Zheng, Jane-Hwei Lee, Min Huang, Xinyan Qu, Srilatha Edupuganti,[...]. Proc Natl Acad Sci U S A 2012
315
12

Lineage structure of the human antibody repertoire in response to influenza vaccination.
Ning Jiang, Jiankui He, Joshua A Weinstein, Lolita Penland, Sanae Sasaki, Xiao-Song He, Cornelia L Dekker, Nai-Ying Zheng, Min Huang, Meghan Sullivan,[...]. Sci Transl Med 2013
238
12

Epitope-specific human influenza antibody repertoires diversify by B cell intraclonal sequence divergence and interclonal convergence.
Jens C Krause, Tshidi Tsibane, Terrence M Tumpey, Chelsey J Huffman, Bryan S Briney, Scott A Smith, Christopher F Basler, James E Crowe. J Immunol 2011
66
12

Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles.
Daniel Gadala-Maria, Gur Yaari, Mohamed Uduman, Steven H Kleinstein. Proc Natl Acad Sci U S A 2015
122
12

Naive antibody gene-segment frequencies are heritable and unaltered by chronic lymphocyte ablation.
Jacob Glanville, Tracy C Kuo, H-Christian von Büdingen, Lin Guey, Jan Berka, Purnima D Sundar, Gabriella Huerta, Gautam R Mehta, Jorge R Oksenberg, Stephen L Hauser,[...]. Proc Natl Acad Sci U S A 2011
122
12

Individual variation in the germline Ig gene repertoire inferred from variable region gene rearrangements.
Scott D Boyd, Bruno A Gaëta, Katherine J Jackson, Andrew Z Fire, Eleanor L Marshall, Jason D Merker, Jay M Maniar, Lyndon N Zhang, Bita Sahaf, Carol D Jones,[...]. J Immunol 2010
186
12

Heterosubtypic neutralizing monoclonal antibodies cross-protective against H5N1 and H1N1 recovered from human IgM+ memory B cells.
Mark Throsby, Edward van den Brink, Mandy Jongeneelen, Leo L M Poon, Philippe Alard, Lisette Cornelissen, Arjen Bakker, Freek Cox, Els van Deventer, Yi Guan,[...]. PLoS One 2008
574
12

A neutralizing antibody selected from plasma cells that binds to group 1 and group 2 influenza A hemagglutinins.
Davide Corti, Jarrod Voss, Steven J Gamblin, Giosiana Codoni, Annalisa Macagno, David Jarrossay, Sebastien G Vachieri, Debora Pinna, Andrea Minola, Fabrizia Vanzetta,[...]. Science 2011
877
12

Production of individualized V gene databases reveals high levels of immunoglobulin genetic diversity.
Martin M Corcoran, Ganesh E Phad, Néstor Vázquez Bernat, Christiane Stahl-Hennig, Noriyuki Sumida, Mats A A Persson, Marcel Martin, Gunilla B Karlsson Hedestam. Nat Commun 2016
108
12

Commonality despite exceptional diversity in the baseline human antibody repertoire.
Bryan Briney, Anne Inderbitzin, Collin Joyce, Dennis R Burton. Nature 2019
221
12

Structural basis of a shared antibody response to SARS-CoV-2.
Meng Yuan, Hejun Liu, Nicholas C Wu, Chang-Chun D Lee, Xueyong Zhu, Fangzhu Zhao, Deli Huang, Wenli Yu, Yuanzi Hua, Henry Tien,[...]. Science 2020
352
12

B-cell repertoire responses to varicella-zoster vaccination in human identical twins.
Chen Wang, Yi Liu, Mary M Cavanagh, Sabine Le Saux, Qian Qi, Krishna M Roskin, Timothy J Looney, Ji-Yeun Lee, Vaishali Dixit, Cornelia L Dekker,[...]. Proc Natl Acad Sci U S A 2015
66
11

Genetic measurement of memory B-cell recall using antibody repertoire sequencing.
Christopher Vollmers, Rene V Sit, Joshua A Weinstein, Cornelia L Dekker, Stephen R Quake. Proc Natl Acad Sci U S A 2013
165
11

High-throughput sequencing of the paired human immunoglobulin heavy and light chain repertoire.
Brandon J DeKosky, Gregory C Ippolito, Ryan P Deschner, Jason J Lavinder, Yariv Wine, Brandon M Rawlings, Navin Varadarajan, Claudia Giesecke, Thomas Dörner, Sarah F Andrews,[...]. Nat Biotechnol 2013
308
11


Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding.
Johannes F Scheid, Hugo Mouquet, Beatrix Ueberheide, Ron Diskin, Florian Klein, Thiago Y K Oliveira, John Pietzsch, David Fenyo, Alexander Abadir, Klara Velinzon,[...]. Science 2011
870
11

Flow cytometry reveals that H5N1 vaccination elicits cross-reactive stem-directed antibodies from multiple Ig heavy-chain lineages.
James R R Whittle, Adam K Wheatley, Lan Wu, Daniel Lingwood, Masaru Kanekiyo, Steven S Ma, Sandeep R Narpala, Hadi M Yassine, Gregory M Frank, Jonathan W Yewdell,[...]. J Virol 2014
159
11

A stable trimeric influenza hemagglutinin stem as a broadly protective immunogen.
Antonietta Impagliazzo, Fin Milder, Harmjan Kuipers, Michelle V Wagner, Xueyong Zhu, Ryan M B Hoffman, Ruud van Meersbergen, Jeroen Huizingh, Patrick Wanningen, Johan Verspuij,[...]. Science 2015
374
11

WebLogo: a sequence logo generator.
Gavin E Crooks, Gary Hon, John-Marc Chandonia, Steven E Brenner. Genome Res 2004
11

Public antibodies to malaria antigens generated by two LAIR1 insertion modalities.
Kathrin Pieper, Joshua Tan, Luca Piccoli, Mathilde Foglierini, Sonia Barbieri, Yiwei Chen, Chiara Silacci-Fregni, Tobias Wolf, David Jarrossay, Marica Anderle,[...]. Nature 2017
72
11

Antibody Heavy Chain Variable Domains of Different Germline Gene Origins Diversify through Different Paths.
Ufuk Kirik, Helena Persson, Fredrik Levander, Lennart Greiff, Mats Ohlin. Front Immunol 2017
20
35


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.