A citation-based method for searching scientific literature

Marcel Elie Nutsua, Annegret Fischer, Almut Nebel, Sylvia Hofmann, Stefan Schreiber, Michael Krawczak, Michael Nothnagel. PLoS One 2015
Times Cited: 5







List of co-cited articles
17 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls.
Justin M Zook, Brad Chapman, Jason Wang, David Mittelman, Oliver Hofmann, Winston Hide, Marc Salit. Nat Biotechnol 2014
422
60

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
60

The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
60

Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform.
Jeanette E Eckel-Passow, Elizabeth J Atkinson, Sooraj Maharjan, Sharon L R Kardia, Mariza de Andrade. BMC Bioinformatics 2011
40
40

A copy number variation map of the human genome.
Mehdi Zarrei, Jeffrey R MacDonald, Daniele Merico, Stephen W Scherer. Nat Rev Genet 2015
383
40

Comparing complex variants in family trios.
Berke Ç Toptas, Goran Rakocevic, Péter Kómár, Deniz Kural. Bioinformatics 2018
7
40


svclassify: a method to establish benchmark structural variant calls.
Hemang Parikh, Marghoob Mohiyuddin, Hugo Y K Lam, Hariharan Iyer, Desu Chen, Mark Pratt, Gabor Bartha, Noah Spies, Wolfgang Losert, Justin M Zook,[...]. BMC Genomics 2016
52
40


Systematic comparison of variant calling pipelines using gold standard personal exome variants.
Sohyun Hwang, Eiru Kim, Insuk Lee, Edward M Marcotte. Sci Rep 2015
152
40

SMaSH: a benchmarking toolkit for human genome variant calling.
Ameet Talwalkar, Jesse Liptrap, Julie Newcomb, Christopher Hartl, Jonathan Terhorst, Kristal Curtis, Ma'ayan Bresler, Yun S Song, Michael I Jordan, David Patterson. Bioinformatics 2014
22
40

Clinical application of next-generation sequencing for Mendelian diseases.
Saumya Shekhar Jamuar, Ene-Choo Tan. Hum Genomics 2015
56
40

New insights into the generation and role of de novo mutations in health and disease.
Rocio Acuna-Hidalgo, Joris A Veltman, Alexander Hoischen. Genome Biol 2016
164
40

Using Mendelian inheritance errors as quality control criteria in whole genome sequencing data set.
Valentina V Pilipenko, Hua He, Brad G Kurowski, Eileen S Alexander, Xue Zhang, Lili Ding, Tesfaye B Mersha, Leah Kottyan, David W Fardo, Lisa J Martin. BMC Proc 2014
8
40

Unified representation of genetic variants.
Adrian Tan, Gonçalo R Abecasis, Hyun Min Kang. Bioinformatics 2015
167
40

geck: trio-based comparative benchmarking of variant calls.
Péter Kómár, Deniz Kural. Bioinformatics 2018
5
40

Variation in genome-wide mutation rates within and between human families.
Donald F Conrad, Jonathan E M Keebler, Mark A DePristo, Sarah J Lindsay, Yujun Zhang, Ferran Casals, Youssef Idaghdour, Chris L Hartl, Carlos Torroja, Kiran V Garimella,[...]. Nat Genet 2011
345
40

Parent-specific copy number in paired tumor-normal studies using circular binary segmentation.
Adam B Olshen, Henrik Bengtsson, Pierre Neuvial, Paul T Spellman, Richard A Olshen, Venkatraman E Seshan. Bioinformatics 2011
68
20

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.
Jordi Barretina, Giordano Caponigro, Nicolas Stransky, Kavitha Venkatesan, Adam A Margolin, Sungjoon Kim, Christopher J Wilson, Joseph Lehár, Gregory V Kryukov, Dmitriy Sonkin,[...]. Nature 2012
20

Ultra-High Density SNParray in Neuroblastoma Molecular Diagnostics.
Inge M Ambros, Clemens Brunner, Reza Abbasi, Christian Frech, Peter F Ambros. Front Oncol 2014
33
20


NCBI GEO: archive for functional genomics data sets--update.
Tanya Barrett, Stephen E Wilhite, Pierre Ledoux, Carlos Evangelista, Irene F Kim, Maxim Tomashevsky, Kimberly A Marshall, Katherine H Phillippy, Patti M Sherman, Michelle Holko,[...]. Nucleic Acids Res 2013
20

Genomic microarrays: a technology overview.
Paul D Brady, Joris R Vermeesch. Prenat Diagn 2012
28
20

Genomic portrait of resectable hepatocellular carcinomas: implications of RB1 and FGF19 aberrations for patient stratification.
Sung-Min Ahn, Se Jin Jang, Ju Hyun Shim, Deokhoon Kim, Seung-Mo Hong, Chang Ohk Sung, Daehyun Baek, Farhan Haq, Adnan Ahmad Ansari, Sun Young Lee,[...]. Hepatology 2014
231
20

Comparing CNV detection methods for SNP arrays.
Laura Winchester, Christopher Yau, Jiannis Ragoussis. Brief Funct Genomic Proteomic 2009
138
20

Allele-specific copy number analysis of tumors.
Peter Van Loo, Silje H Nordgard, Ole Christian Lingjærde, Hege G Russnes, Inga H Rye, Wei Sun, Victor J Weigman, Peter Marynen, Anders Zetterberg, Bjørn Naume,[...]. Proc Natl Acad Sci U S A 2010
590
20

Breaking the waves: improved detection of copy number variation from microarray-based comparative genomic hybridization.
John C Marioni, Natalie P Thorne, Armand Valsesia, Tomas Fitzgerald, Richard Redon, Heike Fiegler, T Daniel Andrews, Barbara E Stranger, Andrew G Lynch, Emmanouil T Dermitzakis,[...]. Genome Biol 2007
99
20

Emerging landscape of oncogenic signatures across human cancers.
Giovanni Ciriello, Martin L Miller, Bülent Arman Aksoy, Yasin Senbabaoglu, Nikolaus Schultz, Chris Sander. Nat Genet 2013
779
20


The Human Glioblastoma Cell Culture Resource: Validated Cell Models Representing All Molecular Subtypes.
Yuan Xie, Tobias Bergström, Yiwen Jiang, Patrik Johansson, Voichita Dana Marinescu, Nanna Lindberg, Anna Segerman, Grzegorz Wicher, Mia Niklasson, Sathishkumar Baskaran,[...]. EBioMedicine 2015
135
20

Absolute quantification of somatic DNA alterations in human cancer.
Scott L Carter, Kristian Cibulskis, Elena Helman, Aaron McKenna, Hui Shen, Travis Zack, Peter W Laird, Robert C Onofrio, Wendy Winckler, Barbara A Weir,[...]. Nat Biotechnol 2012
20

The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups.
Christina Curtis, Sohrab P Shah, Suet-Feung Chin, Gulisa Turashvili, Oscar M Rueda, Mark J Dunning, Doug Speed, Andy G Lynch, Shamith Samarajiwa, Yinyin Yuan,[...]. Nature 2012
20

Allele-specific copy number analysis of tumor samples with aneuploidy and tumor heterogeneity.
Markus Rasmussen, Magnus Sundström, Hanna Göransson Kultima, Johan Botling, Patrick Micke, Helgi Birgisson, Bengt Glimelius, Anders Isaksson. Genome Biol 2011
60
20

A high-resolution copy-number variation resource for clinical and population genetics.
Mohammed Uddin, Bhooma Thiruvahindrapuram, Susan Walker, Zhuozhi Wang, Pingzhao Hu, Sylvia Lamoureux, John Wei, Jeffrey R MacDonald, Giovanna Pellecchia, Chao Lu,[...]. Genet Med 2015
48
20


Integration of SNP genotyping confidence scores in IBD inference.
Barak Markus, Ohad S Birk, Dan Geiger. Bioinformatics 2011
10
20

Best practices for evaluating single nucleotide variant calling methods for microbial genomics.
Nathan D Olson, Steven P Lund, Rebecca E Colman, Jeffrey T Foster, Jason W Sahl, James M Schupp, Paul Keim, Jayne B Morrow, Marc L Salit, Justin M Zook. Front Genet 2015
83
20

Toward better benchmarking: challenge-based methods assessment in cancer genomics.
Paul C Boutros, Adam A Margolin, Joshua M Stuart, Andrea Califano, Gustavo Stolovitzky. Genome Biol 2014
23
20

Parametric model-based statistics for possible genotyping errors and sample stratification in sibling-pair SNP data.
Michael Korostishevsky, Ida Malkin, Tim Spector, Gregory Livshits. Genet Epidemiol 2010
2
50


Exome sequencing as a tool for Mendelian disease gene discovery.
Michael J Bamshad, Sarah B Ng, Abigail W Bigham, Holly K Tabor, Mary J Emond, Deborah A Nickerson, Jay Shendure. Nat Rev Genet 2011
20


Rare variant detection using family-based sequencing analysis.
Gang Peng, Yu Fan, Timothy B Palculict, Peidong Shen, E Cristy Ruteshouser, Aung-Kyaw Chi, Ronald W Davis, Vicki Huff, Curt Scharfe, Wenyi Wang. Proc Natl Acad Sci U S A 2013
36
20

A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree.
Michael A Eberle, Epameinondas Fritzilas, Peter Krusche, Morten Källberg, Benjamin L Moore, Mitchell A Bekritsky, Zamin Iqbal, Han-Yu Chuang, Sean J Humphray, Aaron L Halpern,[...]. Genome Res 2017
157
20

De novo mutations in human genetic disease.
Joris A Veltman, Han G Brunner. Nat Rev Genet 2012
450
20

Inexpensive and Highly Reproducible Cloud-Based Variant Calling of 2,535 Human Genomes.
Suyash S Shringarpure, Andrew Carroll, Francisco M De La Vega, Carlos D Bustamante. PLoS One 2015
8
20


Extensive sequencing of seven human genomes to characterize benchmark reference materials.
Justin M Zook, David Catoe, Jennifer McDaniel, Lindsay Vang, Noah Spies, Arend Sidow, Ziming Weng, Yuling Liu, Christopher E Mason, Noah Alexander,[...]. Sci Data 2016
252
20

A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads.
Kaname Kojima, Naoki Nariai, Takahiro Mimori, Mamoru Takahashi, Yumi Yamaguchi-Kabata, Yukuto Sato, Masao Nagasaki. Bioinformatics 2013
6
20

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.
Swapan Mallick, Heng Li, Mark Lipson, Iain Mathieson, Melissa Gymrek, Fernando Racimo, Mengyao Zhao, Niru Chennagiri, Susanne Nordenfelt, Arti Tandon,[...]. Nature 2016
517
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.