A citation-based method for searching scientific literature

Jinsuk Kang, Matthias Lienhard, William A Pastor, Ashu Chawla, Mark Novotny, Ageliki Tsagaratou, Roger S Lasken, Elizabeth C Thompson, M Azim Surani, Sergei B Koralov, Sundeep Kalantry, Lukas Chavez, Anjana Rao. Proc Natl Acad Sci U S A 2015
Times Cited: 64







List of co-cited articles
759 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.
Mamta Tahiliani, Kian Peng Koh, Yinghua Shen, William A Pastor, Hozefa Bandukwala, Yevgeny Brudno, Suneet Agarwal, Lakshminarayan M Iyer, David R Liu, L Aravind,[...]. Science 2009
64

Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine.
Shinsuke Ito, Li Shen, Qing Dai, Susan C Wu, Leonard B Collins, James A Swenberg, Chuan He, Yi Zhang. Science 2011
51

The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes.
Tian-Peng Gu, Fan Guo, Hui Yang, Hai-Ping Wu, Gui-Fang Xu, Wei Liu, Zhi-Guo Xie, Linyu Shi, Xinyi He, Seung-gi Jin,[...]. Nature 2011
751
51

Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.
Yu-Fei He, Bin-Zhong Li, Zheng Li, Peng Liu, Yang Wang, Qingyu Tang, Jianping Ding, Yingying Jia, Zhangcheng Chen, Lin Li,[...]. Science 2011
46

Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development.
Meelad M Dawlaty, Kibibi Ganz, Benjamin E Powell, Yueh-Chiang Hu, Styliani Markoulaki, Albert W Cheng, Qing Gao, Jongpil Kim, Sang-Woon Choi, David C Page,[...]. Cell Stem Cell 2011
350
43

Combined deficiency of Tet1 and Tet2 causes epigenetic abnormalities but is compatible with postnatal development.
Meelad M Dawlaty, Achim Breiling, Thuc Le, Günter Raddatz, M Inmaculada Barrasa, Albert W Cheng, Qing Gao, Benjamin E Powell, Zhe Li, Mingjiang Xu,[...]. Dev Cell 2013
293
42

Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification.
Shinsuke Ito, Ana C D'Alessio, Olena V Taranova, Kwonho Hong, Lawrence C Sowers, Yi Zhang. Nature 2010
37

Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells.
Kian Peng Koh, Akiko Yabuuchi, Sridhar Rao, Yun Huang, Kerrianne Cunniff, Julie Nardone, Asta Laiho, Mamta Tahiliani, Cesar A Sommer, Gustavo Mostoslavsky,[...]. Cell Stem Cell 2011
551
29

Tet1 regulates adult hippocampal neurogenesis and cognition.
Run-Rui Zhang, Qing-Yan Cui, Kiyohito Murai, Yen Ching Lim, Zachary D Smith, Shengnan Jin, Peng Ye, Luis Rosa, Yew Kok Lee, Hai-Ping Wu,[...]. Cell Stem Cell 2013
229
29

Tet2 loss leads to increased hematopoietic stem cell self-renewal and myeloid transformation.
Kelly Moran-Crusio, Linsey Reavie, Alan Shih, Omar Abdel-Wahab, Delphine Ndiaye-Lobry, Camille Lobry, Maria E Figueroa, Aparna Vasanthakumar, Jay Patel, Xinyang Zhao,[...]. Cancer Cell 2011
841
28

5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation.
Gary C Hon, Chun-Xiao Song, Tingting Du, Fulai Jin, Siddarth Selvaraj, Ah Young Lee, Chia-An Yen, Zhen Ye, Shi-Qing Mao, Bang-An Wang,[...]. Mol Cell 2014
217
28

Loss of Tet enzymes compromises proper differentiation of embryonic stem cells.
Meelad M Dawlaty, Achim Breiling, Thuc Le, M Inmaculada Barrasa, Günter Raddatz, Qing Gao, Benjamin E Powell, Albert W Cheng, Kym F Faull, Frank Lyko,[...]. Dev Cell 2014
204
28

Ten-Eleven-Translocation 2 (TET2) negatively regulates homeostasis and differentiation of hematopoietic stem cells in mice.
Myunggon Ko, Hozefa S Bandukwala, Jungeun An, Edward D Lamperti, Elizabeth C Thompson, Ryan Hastie, Angeliki Tsangaratou, Klaus Rajewsky, Sergei B Koralov, Anjana Rao. Proc Natl Acad Sci U S A 2011
385
26

Tet3 and DNA replication mediate demethylation of both the maternal and paternal genomes in mouse zygotes.
Li Shen, Azusa Inoue, Jin He, Yuting Liu, Falong Lu, Yi Zhang. Cell Stem Cell 2014
151
26

TET-mediated DNA demethylation controls gastrulation by regulating Lefty-Nodal signalling.
Hai-Qiang Dai, Bang-An Wang, Lu Yang, Jia-Jia Chen, Guo-Chun Zhu, Mei-Ling Sun, Hao Ge, Rui Wang, Deborah L Chapman, Fuchou Tang,[...]. Nature 2016
102
26

Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2.
Myunggon Ko, Yun Huang, Anna M Jankowska, Utz J Pape, Mamta Tahiliani, Hozefa S Bandukwala, Jungeun An, Edward D Lamperti, Kian Peng Koh, Rebecca Ganetzky,[...]. Nature 2010
950
25

Role of Tet proteins in enhancer activity and telomere elongation.
Falong Lu, Yuting Liu, Lan Jiang, Shinpei Yamaguchi, Yi Zhang. Genes Dev 2014
170
25


TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity.
Kristine Williams, Jesper Christensen, Marianne Terndrup Pedersen, Jens V Johansen, Paul A C Cloos, Juri Rappsilber, Kristian Helin. Nature 2011
716
25

Tet1 is critical for neuronal activity-regulated gene expression and memory extinction.
Andrii Rudenko, Meelad M Dawlaty, Jinsoo Seo, Albert W Cheng, Jia Meng, Thuc Le, Kym F Faull, Rudolf Jaenisch, Li-Huei Tsai. Neuron 2013
289
25


Deletion of Tet2 in mice leads to dysregulated hematopoietic stem cells and subsequent development of myeloid malignancies.
Zhe Li, Xiaoqiang Cai, Chen-Leng Cai, Jiapeng Wang, Wenyong Zhang, Bruce E Petersen, Feng-Chun Yang, Mingjiang Xu. Blood 2011
442
23

Distinct roles of the methylcytosine oxidases Tet1 and Tet2 in mouse embryonic stem cells.
Yun Huang, Lukas Chavez, Xing Chang, Xue Wang, William A Pastor, Jinsuk Kang, Jorge A Zepeda-Martínez, Utz J Pape, Steven E Jacobsen, Bjoern Peters,[...]. Proc Natl Acad Sci U S A 2014
176
23

TETonic shift: biological roles of TET proteins in DNA demethylation and transcription.
William A Pastor, L Aravind, Anjana Rao. Nat Rev Mol Cell Biol 2013
561
23

Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells.
Hao Wu, Ana C D'Alessio, Shinsuke Ito, Kai Xia, Zhibin Wang, Kairong Cui, Keji Zhao, Yi Eve Sun, Yi Zhang. Nature 2011
470
23

5-Hydroxymethylcytosine in the mammalian zygote is linked with epigenetic reprogramming.
Mark Wossidlo, Toshinobu Nakamura, Konstantin Lepikhov, C Joana Marques, Valeri Zakhartchenko, Michele Boiani, Julia Arand, Toru Nakano, Wolf Reik, Jörn Walter. Nat Commun 2011
534
23


Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives.
Cornelia G Spruijt, Felix Gnerlich, Arne H Smits, Toni Pfaffeneder, Pascal W T C Jansen, Christina Bauer, Martin Münzel, Mirko Wagner, Markus Müller, Fariha Khan,[...]. Cell 2013
682
21

Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells.
Kathryn Blaschke, Kevin T Ebata, Mohammad M Karimi, Jorge A Zepeda-Martínez, Preeti Goyal, Sahasransu Mahapatra, Angela Tam, Diana J Laird, Martin Hirst, Anjana Rao,[...]. Nature 2013
535
21

Active and passive demethylation of male and female pronuclear DNA in the mammalian zygote.
Fan Guo, Xianlong Li, Dan Liang, Tong Li, Ping Zhu, Hongshan Guo, Xinglong Wu, Lu Wen, Tian-Peng Gu, Boqiang Hu,[...]. Cell Stem Cell 2014
223
21


DNA methylation: roles in mammalian development.
Zachary D Smith, Alexander Meissner. Nat Rev Genet 2013
21

Modulation of TET2 expression and 5-methylcytosine oxidation by the CXXC domain protein IDAX.
Myunggon Ko, Jungeun An, Hozefa S Bandukwala, Lukas Chavez, Tarmo Aijö, William A Pastor, Matthew F Segal, Huiming Li, Kian Peng Koh, Harri Lähdesmäki,[...]. Nature 2013
247
20

Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine.
Khursheed Iqbal, Seung-Gi Jin, Gerd P Pfeifer, Piroska E Szabó. Proc Natl Acad Sci U S A 2011
483
20

A unique regulatory phase of DNA methylation in the early mammalian embryo.
Zachary D Smith, Michelle M Chan, Tarjei S Mikkelsen, Hongcang Gu, Andreas Gnirke, Aviv Regev, Alexander Meissner. Nature 2012
648
20

TET1 is a tumor suppressor of hematopoietic malignancy.
Luisa Cimmino, Meelad M Dawlaty, Delphine Ndiaye-Lobry, Yoon Sing Yap, Sofia Bakogianni, Yiting Yu, Sanchari Bhattacharyya, Rita Shaknovich, Huimin Geng, Camille Lobry,[...]. Nat Immunol 2015
138
18

Role of TET enzymes in DNA methylation, development, and cancer.
Kasper Dindler Rasmussen, Kristian Helin. Genes Dev 2016
495
18

Tet proteins influence the balance between neuroectodermal and mesodermal fate choice by inhibiting Wnt signaling.
Xiang Li, Xiaojing Yue, William A Pastor, Lizhu Lin, Romain Georges, Lukas Chavez, Sylvia M Evans, Anjana Rao. Proc Natl Acad Sci U S A 2016
58
20

TET2 inactivation results in pleiotropic hematopoietic abnormalities in mouse and is a recurrent event during human lymphomagenesis.
Cyril Quivoron, Lucile Couronné, Véronique Della Valle, Cécile K Lopez, Isabelle Plo, Orianne Wagner-Ballon, Marcio Do Cruzeiro, Francois Delhommeau, Bertrand Arnulf, Marc-Henri Stern,[...]. Cancer Cell 2011
638
17

Acute loss of TET function results in aggressive myeloid cancer in mice.
Jungeun An, Edahí González-Avalos, Ashu Chawla, Mira Jeong, Isaac F López-Moyado, Wei Li, Margaret A Goodell, Lukas Chavez, Myunggon Ko, Anjana Rao. Nat Commun 2015
100
17


Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation.
Gabriella Ficz, Miguel R Branco, Stefanie Seisenberger, Fátima Santos, Felix Krueger, Timothy A Hore, C Joana Marques, Simon Andrews, Wolf Reik. Nature 2011
808
17

De novo DNA methylation drives 5hmC accumulation in mouse zygotes.
Rachel Amouroux, Buhe Nashun, Kenjiro Shirane, Shoma Nakagawa, Peter Ws Hill, Zelpha D'Souza, Manabu Nakayama, Masashi Matsuda, Aleksandra Turp, Elodie Ndjetehe,[...]. Nat Cell Biol 2016
125
17

The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells.
Stefanie Seisenberger, Simon Andrews, Felix Krueger, Julia Arand, Jörn Walter, Fátima Santos, Christian Popp, Bernard Thienpont, Wendy Dean, Wolf Reik. Mol Cell 2012
592
17



Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics.
Li Shen, Hao Wu, Dinh Diep, Shinpei Yamaguchi, Ana C D'Alessio, Ho-Lim Fung, Kun Zhang, Yi Zhang. Cell 2013
346
15

Tet3 CXXC domain and dioxygenase activity cooperatively regulate key genes for Xenopus eye and neural development.
Yufei Xu, Chao Xu, Akiko Kato, Wolfram Tempel, Jose Garcia Abreu, Chuanbing Bian, Yeguang Hu, Di Hu, Bin Zhao, Tanja Cerovina,[...]. Cell 2012
172
15


NANOG-dependent function of TET1 and TET2 in establishment of pluripotency.
Yael Costa, Junjun Ding, Thorold W Theunissen, Francesco Faiola, Timothy A Hore, Pavel V Shliaha, Miguel Fidalgo, Arven Saunders, Moyra Lawrence, Sabine Dietmann,[...]. Nature 2013
290
15


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.