A citation-based method for searching scientific literature

Manuel A Garrido-Ramos. Cytogenet Genome Res 2015
Times Cited: 84







List of co-cited articles
949 articles co-cited >1



Times Cited
  Times     Co-cited
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TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads.
Petr Novák, Laura Ávila Robledillo, Andrea Koblížková, Iva Vrbová, Pavel Neumann, Jirí Macas. Nucleic Acids Res 2017
119
42

Satellite DNA: An Evolving Topic.
Manuel A Garrido-Ramos. Genes (Basel) 2017
162
42

Repetitive sequences in plant nuclear DNA: types, distribution, evolution and function.
Shweta Mehrotra, Vinod Goyal. Genomics Proteomics Bioinformatics 2014
119
41

Satellite DNA evolution.
M Plohl, N Meštrović, B Mravinac. Genome Dyn 2012
118
38

High-throughput analysis of the satellitome illuminates satellite DNA evolution.
Francisco J Ruiz-Ruano, María Dolores López-León, Josefa Cabrero, Juan Pedro M Camacho. Sci Rep 2016
112
36


In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae.
Jiří Macas, Petr Novák, Jaume Pellicer, Jana Čížková, Andrea Koblížková, Pavel Neumann, Iva Fuková, Jaroslav Doležel, Laura J Kelly, Ilia J Leitch. PLoS One 2015
94
27


Repetitive DNA in eukaryotic genomes.
Maria Assunta Biscotti, Ettore Olmo, J S Pat Heslop-Harrison. Chromosome Res 2015
132
26

Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution.
Daniël P Melters, Keith R Bradnam, Hugh A Young, Natalie Telis, Michael R May, J Graham Ruby, Robert Sebra, Paul Peluso, John Eid, David Rank,[...]. Genome Biol 2013
243
25


The evolutionary dynamics of repetitive DNA in eukaryotes.
B Charlesworth, P Sniegowski, W Stephan. Nature 1994
21

PlantSat: a specialized database for plant satellite repeats.
Jirí Macas, Tibor Mészáros, Marcela Nouzová. Bioinformatics 2002
83
20

Structural and functional liaisons between transposable elements and satellite DNAs.
Nevenka Meštrović, Brankica Mravinac, Martina Pavlek, Tanja Vojvoda-Zeljko, Eva Šatović, Miroslav Plohl. Chromosome Res 2015
67
25

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
19


Organisation of the plant genome in chromosomes.
J S Pat Heslop-Harrison, Trude Schwarzacher. Plant J 2011
135
17


Organization and evolution of subtelomeric satellite repeats in the potato genome.
Giovana A Torres, Zhiyun Gong, Marina Iovene, Cory D Hirsch, C Robin Buell, Glenn J Bryan, Petr Novák, Jiří Macas, Jiming Jiang. G3 (Bethesda) 2011
52
26

The holocentric species Luzula elegans shows interplay between centromere and large-scale genome organization.
Stefan Heckmann, Jiri Macas, Katrin Kumke, Jörg Fuchs, Veit Schubert, Lu Ma, Petr Novák, Pavel Neumann, Stefan Taudien, Matthias Platzer,[...]. Plant J 2013
59
23

Centromere identity from the DNA point of view.
Miroslav Plohl, Nevenka Meštrović, Brankica Mravinac. Chromosoma 2014
103
15

The B73 maize genome: complexity, diversity, and dynamics.
Patrick S Schnable, Doreen Ware, Robert S Fulton, Joshua C Stein, Fusheng Wei, Shiran Pasternak, Chengzhi Liang, Jianwei Zhang, Lucinda Fulton, Tina A Graves,[...]. Science 2009
15


Next generation sequencing-based analysis of repetitive DNA in the model dioecious [corrected] plant Silene latifolia.
Jiří Macas, Eduard Kejnovský, Pavel Neumann, Petr Novák, Andrea Koblížková, Boris Vyskot. PLoS One 2011
74
17

Differential amplification of satellite PaB6 in chromosomally hypervariable Prospero autumnale complex (Hyacinthaceae).
Khatere Emadzade, Tae-Soo Jang, Jiří Macas, Ales Kovařík, Petr Novák, John Parker, Hanna Weiss-Schneeweiss. Ann Bot 2014
37
32

Plant centromeric retrotransposons: a structural and cytogenetic perspective.
Pavel Neumann, Alice Navrátilová, Andrea Koblížková, Eduard Kejnovský, Eva Hřibová, Roman Hobza, Alex Widmer, Jaroslav Doležel, Jiří Macas. Mob DNA 2011
111
14



The repetitive DNA content of eukaryotic genomes.
I López-Flores, M A Garrido-Ramos. Genome Dyn 2012
130
14

Hypervariable 3' UTR region of plant LTR-retrotransposons as a source of novel satellite repeats.
Jirí Macas, Andrea Koblízková, Alice Navrátilová, Pavel Neumann. Gene 2009
56
21


Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
14

Satellite DNA evolution: old ideas, new approaches.
Sarah Sander Lower, Michael P McGurk, Andrew G Clark, Daniel A Barbash. Curr Opin Genet Dev 2018
72
16

Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing.
Laura Ávila Robledillo, Andrea Koblížková, Petr Novák, Katharina Böttinger, Iva Vrbová, Pavel Neumann, Ingo Schubert, Jiří Macas. Sci Rep 2018
34
35

Characterization of repeat arrays in ultra-long nanopore reads reveals frequent origin of satellite DNA from retrotransposon-derived tandem repeats.
Tihana Vondrak, Laura Ávila Robledillo, Petr Novák, Andrea Koblížková, Pavel Neumann, Jiří Macas. Plant J 2020
40
30



Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.
Matthew Kearse, Richard Moir, Amy Wilson, Steven Stones-Havas, Matthew Cheung, Shane Sturrock, Simon Buxton, Alex Cooper, Sidney Markowitz, Chris Duran,[...]. Bioinformatics 2012
13

Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies.
Katerina Ambrozová, Terezie Mandáková, Petr Bures, Pavel Neumann, Ilia J Leitch, Andrea Koblízková, Jirí Macas, Martin A Lysak. Ann Bot 2011
53
20



Repeatless and repeat-based centromeres in potato: implications for centromere evolution.
Zhiyun Gong, Yufeng Wu, Andrea Koblízková, Giovana A Torres, Kai Wang, Marina Iovene, Pavel Neumann, Wenli Zhang, Petr Novák, C Robin Buell,[...]. Plant Cell 2012
145
11


Long-term conservation vs high sequence divergence: the case of an extraordinarily old satellite DNA in bivalve mollusks.
M Plohl, V Petrović, A Luchetti, A Ricci, E Satović, M Passamonti, B Mantovani. Heredity (Edinb) 2010
47
21


Stretching the rules: monocentric chromosomes with multiple centromere domains.
Pavel Neumann, Alice Navrátilová, Elizabeth Schroeder-Reiter, Andrea Koblížková, Veronika Steinbauerová, Eva Chocholová, Petr Novák, Gerhard Wanner, Jiří Macas. PLoS Genet 2012
83
12


Satellite DNA-mediated effects on genome regulation.
Z Pezer, J Brajković, I Feliciello, D Ugarkovć. Genome Dyn 2012
54
18

Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice.
Benoit Piegu, Romain Guyot, Nathalie Picault, Anne Roulin, Abhijit Sanyal, Hyeran Kim, Kristi Collura, Darshan S Brar, Scott Jackson, Rod A Wing,[...]. Genome Res 2006
334
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.