A citation-based method for searching scientific literature

Debora Lika Makino, Benjamin Schuch, Elisabeth Stegmann, Marc Baumgärtner, Claire Basquin, Elena Conti. Nature 2015
Times Cited: 88







List of co-cited articles
780 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex.
Debora Lika Makino, Marc Baumgärtner, Elena Conti. Nature 2013
156
56

Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA.
Elizabeth V Wasmuth, Kurt Januszyk, Christopher D Lima. Nature 2014
93
55

A single subunit, Dis3, is essentially responsible for yeast exosome core activity.
Andrzej Dziembowski, Esben Lorentzen, Elena Conti, Bertrand Séraphin. Nat Struct Mol Biol 2007
317
53

Reconstitution, activities, and structure of the eukaryotic RNA exosome.
Quansheng Liu, Jaclyn C Greimann, Christopher D Lima. Cell 2006
397
52


The exosome-binding factors Rrp6 and Rrp47 form a composite surface for recruiting the Mtr4 helicase.
Benjamin Schuch, Monika Feigenbutz, Debora L Makino, Sebastian Falk, Claire Basquin, Phil Mitchell, Elena Conti. EMBO J 2014
67
58

The yeast exosome functions as a macromolecular cage to channel RNA substrates for degradation.
Fabien Bonneau, Jérôme Basquin, Judith Ebert, Esben Lorentzen, Elena Conti. Cell 2009
181
43

The regulation and functions of the nuclear RNA exosome complex.
Cornelia Kilchert, Sina Wittmann, Lidia Vasiljeva. Nat Rev Mol Cell Biol 2016
175
39

Functions of the exosome in rRNA, snoRNA and snRNA synthesis.
C Allmang, J Kufel, G Chanfreau, P Mitchell, E Petfalski, D Tollervey. EMBO J 1999
453
38


Endonucleolytic RNA cleavage by a eukaryotic exosome.
Alice Lebreton, Rafal Tomecki, Andrzej Dziembowski, Bertrand Séraphin. Nature 2008
238
36



The human core exosome interacts with differentially localized processive RNases: hDIS3 and hDIS3L.
Rafal Tomecki, Maiken S Kristiansen, Søren Lykke-Andersen, Aleksander Chlebowski, Katja M Larsen, Roman J Szczesny, Karolina Drazkowska, Agnieszka Pastula, Jens S Andersen, Piotr P Stepien,[...]. EMBO J 2010
164
32


Transcriptome-wide analysis of exosome targets.
Claudia Schneider, Grzegorz Kudla, Wiebke Wlotzka, Alex Tuck, David Tollervey. Mol Cell 2012
135
30

The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases.
C Allmang, E Petfalski, A Podtelejnikov, M Mann, D Tollervey, P Mitchell. Genes Dev 1999
360
29


RNA degradation by the exosome is promoted by a nuclear polyadenylation complex.
John LaCava, Jonathan Houseley, Cosmin Saveanu, Elisabeth Petfalski, Elizabeth Thompson, Alain Jacquier, David Tollervey. Cell 2005
667
28

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase.
Françoise Wyers, Mathieu Rougemaille, Gwenaël Badis, Jean-Claude Rousselle, Marie-Elisabeth Dufour, Jocelyne Boulay, Béatrice Régnault, Frédéric Devaux, Abdelkader Namane, Bertrand Séraphin,[...]. Cell 2005
650
28

Interaction profiling identifies the human nuclear exosome targeting complex.
Michal Lubas, Marianne S Christensen, Maiken S Kristiansen, Michal Domanski, Lasse G Falkenby, Søren Lykke-Andersen, Jens S Andersen, Andrzej Dziembowski, Torben Heick Jensen. Mol Cell 2011
258
28

The Exosome Is Recruited to RNA Substrates through Specific Adaptor Proteins.
Matthias Thoms, Emma Thomson, Jochen Baßler, Marén Gnädig, Sabine Griesel, Ed Hurt. Cell 2015
112
27

RNA decay machines: the exosome.
Aleksander Chlebowski, Michał Lubas, Torben Heick Jensen, Andrzej Dziembowski. Biochim Biophys Acta 2013
150
27

The eukaryotic RNA exosome.
Kurt Januszyk, Christopher D Lima. Curr Opin Struct Biol 2014
93
27

The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities.
Daneen Schaeffer, Borislava Tsanova, Ana Barbas, Filipa Pereira Reis, Eeshita Ghosh Dastidar, Maya Sanchez-Rotunno, Cecília Maria Arraiano, Ambro van Hoof. Nat Struct Mol Biol 2009
213
27

Visualization of distinct substrate-recruitment pathways in the yeast exosome by EM.
Jun-Jie Liu, Matthew A Bratkowski, Xueqi Liu, Chu-Ya Niu, Ailong Ke, Hong-Wei Wang. Nat Struct Mol Biol 2014
43
53

The RNA exosome complex central channel controls both exonuclease and endonuclease Dis3 activities in vivo and in vitro.
Karolina Drazkowska, Rafal Tomecki, Krystian Stodus, Katarzyna Kowalska, Mariusz Czarnocki-Cieciura, Andrzej Dziembowski. Nucleic Acids Res 2013
43
53

Degradation of ribosomal RNA precursors by the exosome.
C Allmang, P Mitchell, E Petfalski, D Tollervey. Nucleic Acids Res 2000
182
22

Helicase-Dependent RNA Decay Illuminated by a Cryo-EM Structure of a Human Nuclear RNA Exosome-MTR4 Complex.
Eva-Maria Weick, M Rhyan Puno, Kurt Januszyk, John C Zinder, Michael A DiMattia, Christopher D Lima. Cell 2018
53
37


Structure of the active subunit of the yeast exosome core, Rrp44: diverse modes of substrate recruitment in the RNase II nuclease family.
Esben Lorentzen, Jerome Basquin, Rafal Tomecki, Andrzej Dziembowski, Elena Conti. Mol Cell 2008
141
21

Structure of a Cytoplasmic 11-Subunit RNA Exosome Complex.
Eva Kowalinski, Alexander Kögel, Judith Ebert, Peter Reichelt, Elisabeth Stegmann, Bianca Habermann, Elena Conti. Mol Cell 2016
44
43

Structure of the nuclear exosome captured on a maturing preribosome.
Jan Michael Schuller, Sebastian Falk, Lisa Fromm, Ed Hurt, Elena Conti. Science 2018
46
41

MPP6 is an exosome-associated RNA-binding protein involved in 5.8S rRNA maturation.
Geurt Schilders, Reinout Raijmakers, Jos M H Raats, Ger J M Pruijn. Nucleic Acids Res 2005
81
22

Extensive degradation of RNA precursors by the exosome in wild-type cells.
Rajani Kanth Gudipati, Zhenyu Xu, Alice Lebreton, Bertrand Séraphin, Lars M Steinmetz, Alain Jacquier, Domenico Libri. Mol Cell 2012
165
20

A new yeast poly(A) polymerase complex involved in RNA quality control.
Stepánka Vanácová, Jeannette Wolf, Georges Martin, Diana Blank, Sabine Dettwiler, Arno Friedlein, Hanno Langen, Gérard Keith, Walter Keller. PLoS Biol 2005
451
20

The yeast ski complex: crystal structure and RNA channeling to the exosome complex.
Felix Halbach, Peter Reichelt, Michaela Rode, Elena Conti. Cell 2013
104
20

Dis3-like 1: a novel exoribonuclease associated with the human exosome.
Raymond H J Staals, Alfred W Bronkhorst, Geurt Schilders, Shimyn Slomovic, Gadi Schuster, Albert J R Heck, Reinout Raijmakers, Ger J M Pruijn. EMBO J 2010
97
20

Structural analysis reveals the characteristic features of Mtr4, a DExH helicase involved in nuclear RNA processing and surveillance.
John R Weir, Fabien Bonneau, Jendrik Hentschel, Elena Conti. Proc Natl Acad Sci U S A 2010
101
19


Structure and reconstitution of yeast Mpp6-nuclear exosome complexes reveals that Mpp6 stimulates RNA decay and recruits the Mtr4 helicase.
Elizabeth V Wasmuth, John C Zinder, Dimitrios Zattas, Mom Das, Christopher D Lima. Elife 2017
25
68

The molecular architecture of the TRAMP complex reveals the organization and interplay of its two catalytic activities.
Sebastian Falk, John R Weir, Jendrik Hentschel, Peter Reichelt, Fabien Bonneau, Elena Conti. Mol Cell 2014
46
34

RNA-quality control by the exosome.
Jonathan Houseley, John LaCava, David Tollervey. Nat Rev Mol Cell Biol 2006
474
18

Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae.
Sujatha Kadaba, Anna Krueger, Tamyra Trice, Annette M Krecic, Alan G Hinnebusch, James Anderson. Genes Dev 2004
369
18


The crystal structure of Mtr4 reveals a novel arch domain required for rRNA processing.
Ryan N Jackson, A Alejandra Klauer, Bradley J Hintze, Howard Robinson, Ambro van Hoof, Sean J Johnson. EMBO J 2010
81
18

Mutations in the RNA exosome component gene EXOSC3 cause pontocerebellar hypoplasia and spinal motor neuron degeneration.
Jijun Wan, Michael Yourshaw, Hafsa Mamsa, Sabine Rudnik-Schöneborn, Manoj P Menezes, Ji Eun Hong, Derek W Leong, Jan Senderek, Michael S Salman, David Chitayat,[...]. Nat Genet 2012
150
17

Rrp47p is an exosome-associated protein required for the 3' processing of stable RNAs.
Philip Mitchell, Elisabeth Petfalski, Rym Houalla, Alexandre Podtelejnikov, Matthias Mann, David Tollervey. Mol Cell Biol 2003
132
17

CryoEM structure of yeast cytoplasmic exosome complex.
Jun-Jie Liu, Chu-Ya Niu, Yao Wu, Dan Tan, Yang Wang, Ming-Da Ye, Yang Liu, Wenwei Zhao, Ke Zhou, Quan-Sheng Liu,[...]. Cell Res 2016
31
48

Identification of a Nuclear Exosome Decay Pathway for Processed Transcripts.
Nicola Meola, Michal Domanski, Evdoxia Karadoulama, Yun Chen, Coline Gentil, Dennis Pultz, Kristoffer Vitting-Seerup, Søren Lykke-Andersen, Jens S Andersen, Albin Sandelin,[...]. Mol Cell 2016
113
17


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.