A citation-based method for searching scientific literature

Narayanan Kasthuri, Kenneth Jeffrey Hayworth, Daniel Raimund Berger, Richard Lee Schalek, José Angel Conchello, Seymour Knowles-Barley, Dongil Lee, Amelio Vázquez-Reina, Verena Kaynig, Thouis Raymond Jones, Mike Roberts, Josh Lyskowski Morgan, Juan Carlos Tapia, H Sebastian Seung, William Gray Roncal, Joshua Tzvi Vogelstein, Randal Burns, Daniel Lewis Sussman, Carey Eldin Priebe, Hanspeter Pfister, Jeff William Lichtman. Cell 2015
Times Cited: 384







List of co-cited articles
784 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Dense connectomic reconstruction in layer 4 of the somatosensory cortex.
Alessandro Motta, Manuel Berning, Kevin M Boergens, Benedikt Staffler, Marcel Beining, Sahil Loomba, Philipp Hennig, Heiko Wissler, Moritz Helmstaedter. Science 2019
43
44


The structure of the nervous system of the nematode Caenorhabditis elegans.
J G White, E Southgate, J N Thomson, S Brenner. Philos Trans R Soc Lond B Biol Sci 1986
14

Connectomic reconstruction of the inner plexiform layer in the mouse retina.
Moritz Helmstaedter, Kevin L Briggman, Srinivas C Turaga, Viren Jain, H Sebastian Seung, Winfried Denk. Nature 2013
419
14

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
13

Anatomy and function of an excitatory network in the visual cortex.
Wei-Chung Allen Lee, Vincent Bonin, Michael Reed, Brett J Graham, Greg Hood, Katie Glattfelder, R Clay Reid. Nature 2016
175
12

Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling.
Graham Knott, Herschel Marchman, David Wall, Ben Lich. J Neurosci 2008
360
11

Enhanced FIB-SEM systems for large-volume 3D imaging.
C Shan Xu, Kenneth J Hayworth, Zhiyuan Lu, Patricia Grob, Ahmed M Hassan, José G García-Cerdán, Krishna K Niyogi, Eva Nogales, Richard J Weinberg, Harald F Hess. Elife 2017
93
11

A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster.
Zhihao Zheng, J Scott Lauritzen, Eric Perlman, Camenzind G Robinson, Matthew Nichols, Daniel Milkie, Omar Torrens, John Price, Corey B Fisher, Nadiya Sharifi,[...]. Cell 2018
206
11

Network anatomy and in vivo physiology of visual cortical neurons.
Davi D Bock, Wei-Chung Allen Lee, Aaron M Kerlin, Mark L Andermann, Greg Hood, Arthur W Wetzel, Sergey Yurgenson, Edward R Soucy, Hyon Suk Kim, R Clay Reid. Nature 2011
464
11

TrakEM2 software for neural circuit reconstruction.
Albert Cardona, Stephan Saalfeld, Johannes Schindelin, Ignacio Arganda-Carreras, Stephan Preibisch, Mark Longair, Pavel Tomancak, Volker Hartenstein, Rodney J Douglas. PLoS One 2012
399
11

Whole-brain serial-section electron microscopy in larval zebrafish.
David Grant Colburn Hildebrand, Marcelo Cicconet, Russel Miguel Torres, Woohyuk Choi, Tran Minh Quan, Jungmin Moon, Arthur Willis Wetzel, Andrew Scott Champion, Brett Jesse Graham, Owen Randlett,[...]. Nature 2017
101
10

The Fuzzy Logic of Network Connectivity in Mouse Visual Thalamus.
Josh Lyskowski Morgan, Daniel Raimund Berger, Arthur Willis Wetzel, Jeff William Lichtman. Cell 2016
103
10

Serial-section electron microscopy using automated tape-collecting ultramicrotome (ATUM).
Valentina Baena, Richard Lee Schalek, Jeff William Lichtman, Mark Terasaki. Methods Cell Biol 2019
19
52



Reconstruction and Simulation of Neocortical Microcircuitry.
Henry Markram, Eilif Muller, Srikanth Ramaswamy, Michael W Reimann, Marwan Abdellah, Carlos Aguado Sanchez, Anastasia Ailamaki, Lidia Alonso-Nanclares, Nicolas Antille, Selim Arsever,[...]. Cell 2015
463
9

Large-volume en-bloc staining for electron microscopy-based connectomics.
Yunfeng Hua, Philip Laserstein, Moritz Helmstaedter. Nat Commun 2015
82
10

VAST (Volume Annotation and Segmentation Tool): Efficient Manual and Semi-Automatic Labeling of Large 3D Image Stacks.
Daniel R Berger, H Sebastian Seung, Jeff W Lichtman. Front Neural Circuits 2018
31
29

Nanoconnectomic upper bound on the variability of synaptic plasticity.
Thomas M Bartol, Cailey Bromer, Justin Kinney, Michael A Chirillo, Jennifer N Bourne, Kristen M Harris, Terrence J Sejnowski. Elife 2015
94
9

Volume electron microscopy for neuronal circuit reconstruction.
Kevin L Briggman, Davi D Bock. Curr Opin Neurobiol 2012
158
8

Ultrastructural analysis of hippocampal neuropil from the connectomics perspective.
Yuriy Mishchenko, Tao Hu, Josef Spacek, John Mendenhall, Kristen M Harris, Dmitri B Chklovskii. Neuron 2010
166
8

Wiring specificity in the direction-selectivity circuit of the retina.
Kevin L Briggman, Moritz Helmstaedter, Winfried Denk. Nature 2011
467
8

High-contrast en bloc staining of neuronal tissue for field emission scanning electron microscopy.
Juan Carlos Tapia, Narayanan Kasthuri, Kenneth J Hayworth, Richard Schalek, Jeff W Lichtman, Stephen J Smith, JoAnn Buchanan. Nat Protoc 2012
128
7

Imaging ATUM ultrathin section libraries with WaferMapper: a multi-scale approach to EM reconstruction of neural circuits.
Kenneth J Hayworth, Josh L Morgan, Richard Schalek, Daniel R Berger, David G C Hildebrand, Jeff W Lichtman. Front Neural Circuits 2014
101
7

A mesoscale connectome of the mouse brain.
Seung Wook Oh, Julie A Harris, Lydia Ng, Brent Winslow, Nicholas Cain, Stefan Mihalas, Quanxin Wang, Chris Lau, Leonard Kuan, Alex M Henry,[...]. Nature 2014
988
7

The complete connectome of a learning and memory centre in an insect brain.
Katharina Eichler, Feng Li, Ashok Litwin-Kumar, Youngser Park, Ingrid Andrade, Casey M Schneider-Mizell, Timo Saumweber, Annina Huser, Claire Eschbach, Bertram Gerber,[...]. Nature 2017
173
7

From Cajal to Connectome and Beyond.
Larry W Swanson, Jeff W Lichtman. Annu Rev Neurosci 2016
66
10

Synaptic circuits and their variations within different columns in the visual system of Drosophila.
Shin-ya Takemura, C Shan Xu, Zhiyuan Lu, Patricia K Rivlin, Toufiq Parag, Donald J Olbris, Stephen Plaza, Ting Zhao, William T Katz, Lowell Umayam,[...]. Proc Natl Acad Sci U S A 2015
93
7

Axonal synapse sorting in medial entorhinal cortex.
Helene Schmidt, Anjali Gour, Jakob Straehle, Kevin M Boergens, Michael Brecht, Moritz Helmstaedter. Nature 2017
47
14

Ultrastructure of dendritic spines: correlation between synaptic and spine morphologies.
Jon I Arellano, Ruth Benavides-Piccione, Javier Defelipe, Rafael Yuste. Front Neurosci 2007
276
6


Long-term in vivo imaging of experience-dependent synaptic plasticity in adult cortex.
Joshua T Trachtenberg, Brian E Chen, Graham W Knott, Guoping Feng, Joshua R Sanes, Egbert Welker, Karel Svoboda. Nature 2002
6

Monosynaptic restriction of transsynaptic tracing from single, genetically targeted neurons.
Ian R Wickersham, David C Lyon, Richard J O Barnard, Takuma Mori, Stefan Finke, Karl-Klaus Conzelmann, John A T Young, Edward M Callaway. Neuron 2007
673
6

Directed evolution of APEX2 for electron microscopy and proximity labeling.
Stephanie S Lam, Jeffrey D Martell, Kimberli J Kamer, Thomas J Deerinck, Mark H Ellisman, Vamsi K Mootha, Alice Y Ting. Nat Methods 2015
458
6


Computer visualization of three-dimensional image data using IMOD.
J R Kremer, D N Mastronarde, J R McIntosh. J Struct Biol 1996
6




Locally dynamic synaptic learning rules in pyramidal neuron dendrites.
Christopher D Harvey, Karel Svoboda. Nature 2007
368
6

Structural basis of long-term potentiation in single dendritic spines.
Masanori Matsuzaki, Naoki Honkura, Graham C R Ellis-Davies, Haruo Kasai. Nature 2004
6

Reconstruction of genetically identified neurons imaged by serial-section electron microscopy.
Maximilian Joesch, David Mankus, Masahito Yamagata, Ali Shahbazi, Richard Schalek, Adi Suissa-Peleg, Markus Meister, Jeff W Lichtman, Walter J Scheirer, Joshua R Sanes. Elife 2016
37
16


Exploring the third dimension: volume electron microscopy comes of age.
Christopher J Peddie, Lucy M Collinson. Micron 2014
149
5

Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM).
Michael J Rust, Mark Bates, Xiaowei Zhuang. Nat Methods 2006
5

Release probability of hippocampal glutamatergic terminals scales with the size of the active zone.
Noemi Holderith, Andrea Lorincz, Gergely Katona, Balázs Rózsa, Akos Kulik, Masahiko Watanabe, Zoltan Nusser. Nat Neurosci 2012
248
5

Transient and persistent dendritic spines in the neocortex in vivo.
Anthony J G D Holtmaat, Joshua T Trachtenberg, Linda Wilbrecht, Gordon M Shepherd, Xiaoqun Zhang, Graham W Knott, Karel Svoboda. Neuron 2005
727
5

Balancing structure and function at hippocampal dendritic spines.
Jennifer N Bourne, Kristen M Harris. Annu Rev Neurosci 2008
597
5

A connectome of a learning and memory center in the adult Drosophila brain.
Shin-Ya Takemura, Yoshinori Aso, Toshihide Hige, Allan Wong, Zhiyuan Lu, C Shan Xu, Patricia K Rivlin, Harald Hess, Ting Zhao, Toufiq Parag,[...]. Elife 2017
144
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.