A citation-based method for searching scientific literature

Xue Liang, Frederic D Bushman, Garret A FitzGerald. Proc Natl Acad Sci U S A 2015
Times Cited: 270







List of co-cited articles
1165 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasis.
Christoph A Thaiss, David Zeevi, Maayan Levy, Gili Zilberman-Schapira, Jotham Suez, Anouk C Tengeler, Lior Abramson, Meirav N Katz, Tal Korem, Niv Zmora,[...]. Cell 2014
649
68

Effects of diurnal variation of gut microbes and high-fat feeding on host circadian clock function and metabolism.
Vanessa Leone, Sean M Gibbons, Kristina Martinez, Alan L Hutchison, Edmond Y Huang, Candace M Cham, Joseph F Pierre, Aaron F Heneghan, Anuradha Nadimpalli, Nathaniel Hubert,[...]. Cell Host Microbe 2015
417
53

Diet and feeding pattern affect the diurnal dynamics of the gut microbiome.
Amir Zarrinpar, Amandine Chaix, Shibu Yooseph, Satchidananda Panda. Cell Metab 2014
430
51

Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations.
Christoph A Thaiss, Maayan Levy, Tal Korem, Lenka Dohnalová, Hagit Shapiro, Diego A Jaitin, Eyal David, Deborah R Winter, Meital Gury-BenAri, Evgeny Tatirovsky,[...]. Cell 2016
385
41

The intestinal microbiota regulates body composition through NFIL3 and the circadian clock.
Yuhao Wang, Zheng Kuang, Xiaofei Yu, Kelly A Ruhn, Masato Kubo, Lora V Hooper. Science 2017
208
27

The intestinal microbiota programs diurnal rhythms in host metabolism through histone deacetylase 3.
Zheng Kuang, Yuhao Wang, Yun Li, Cunqi Ye, Kelly A Ruhn, Cassie L Behrendt, Eric N Olson, Lora V Hooper. Science 2019
123
26

Circadian disorganization alters intestinal microbiota.
Robin M Voigt, Christopher B Forsyth, Stefan J Green, Ece Mutlu, Phillip Engen, Martha H Vitaterna, Fred W Turek, Ali Keshavarzian. PLoS One 2014
236
24


Arrhythmic Gut Microbiome Signatures Predict Risk of Type 2 Diabetes.
Sandra Reitmeier, Silke Kiessling, Thomas Clavel, Markus List, Eduardo L Almeida, Tarini S Ghosh, Klaus Neuhaus, Harald Grallert, Jakob Linseisen, Thomas Skurk,[...]. Cell Host Microbe 2020
84
22

The Mouse Microbiome Is Required for Sex-Specific Diurnal Rhythms of Gene Expression and Metabolism.
Benjamin D Weger, Cédric Gobet, Jake Yeung, Eva Martin, Sonia Jimenez, Bertrand Betrisey, Francis Foata, Bernard Berger, Aurélie Balvay, Anne Foussier,[...]. Cell Metab 2019
115
18


Gut Microbiota-Derived Short Chain Fatty Acids Induce Circadian Clock Entrainment in Mouse Peripheral Tissue.
Yu Tahara, Mayu Yamazaki, Haruna Sukigara, Hiroaki Motohashi, Hiroyuki Sasaki, Hiroki Miyakawa, Atsushi Haraguchi, Yuko Ikeda, Shinji Fukuda, Shigenobu Shibata. Sci Rep 2018
121
17

High-fat diet disrupts behavioral and molecular circadian rhythms in mice.
Akira Kohsaka, Aaron D Laposky, Kathryn Moynihan Ramsey, Carmela Estrada, Corinne Joshu, Yumiko Kobayashi, Fred W Turek, Joseph Bass. Cell Metab 2007
967
17


Obesity and metabolic syndrome in circadian Clock mutant mice.
Fred W Turek, Corinne Joshu, Akira Kohsaka, Emily Lin, Ganka Ivanova, Erin McDearmon, Aaron Laposky, Sue Losee-Olson, Amy Easton, Dalan R Jensen,[...]. Science 2005
15

An obesity-associated gut microbiome with increased capacity for energy harvest.
Peter J Turnbaugh, Ruth E Ley, Michael A Mahowald, Vincent Magrini, Elaine R Mardis, Jeffrey I Gordon. Nature 2006
15

Unconjugated Bile Acids Influence Expression of Circadian Genes: A Potential Mechanism for Microbe-Host Crosstalk.
Kalaimathi Govindarajan, John MacSharry, Patrick G Casey, Fergus Shanahan, Susan A Joyce, Cormac G M Gahan. PLoS One 2016
65
23

Circadian Disruption Changes Gut Microbiome Taxa and Functional Gene Composition.
Jessica A Deaver, Sung Y Eum, Michal Toborek. Front Microbiol 2018
94
15

Time-Restricted Feeding Prevents Obesity and Metabolic Syndrome in Mice Lacking a Circadian Clock.
Amandine Chaix, Terry Lin, Hiep D Le, Max W Chang, Satchidananda Panda. Cell Metab 2019
258
13

Physiological significance of a peripheral tissue circadian clock.
Katja A Lamia, Kai-Florian Storch, Charles J Weitz. Proc Natl Acad Sci U S A 2008
721
12

The circadian clock regulates the diurnal levels of microbial short-chain fatty acids and their rhythmic effects on colon contractility in mice.
Anneleen Segers, Louis Desmet, Theo Thijs, Kristin Verbeke, Jan Tack, Inge Depoortere. Acta Physiol (Oxf) 2019
42
28

A circadian gene expression atlas in mammals: implications for biology and medicine.
Ray Zhang, Nicholas F Lahens, Heather I Ballance, Michael E Hughes, John B Hogenesch. Proc Natl Acad Sci U S A 2014
12


Time-restricted feeding without reducing caloric intake prevents metabolic diseases in mice fed a high-fat diet.
Megumi Hatori, Christopher Vollmers, Amir Zarrinpar, Luciano DiTacchio, Eric A Bushong, Shubhroz Gill, Mathias Leblanc, Amandine Chaix, Matthew Joens, James A J Fitzpatrick,[...]. Cell Metab 2012
11

Central and peripheral circadian clocks in mammals.
Jennifer A Mohawk, Carla B Green, Joseph S Takahashi. Annu Rev Neurosci 2012
11

Potential Role for the Gut Microbiota in Modulating Host Circadian Rhythms and Metabolic Health.
Shanthi G Parkar, Andries Kalsbeek, James F Cheeseman. Microorganisms 2019
108
10

Reprogramming of the circadian clock by nutritional challenge.
Kristin L Eckel-Mahan, Vishal R Patel, Sara de Mateo, Ricardo Orozco-Solis, Nicholas J Ceglia, Saurabh Sahar, Sherry A Dilag-Penilla, Kenneth A Dyar, Pierre Baldi, Paolo Sassone-Corsi. Cell 2013
411
10

Metagenomic biomarker discovery and explanation.
Nicola Segata, Jacques Izard, Levi Waldron, Dirk Gevers, Larisa Miropolsky, Wendy S Garrett, Curtis Huttenhower. Genome Biol 2011
10

Light exposure influences the diurnal oscillation of gut microbiota in mice.
Guangyan Wu, Wenli Tang, Yan He, Jingjuan Hu, Shenhai Gong, Zhanke He, Guoquan Wei, Liyi Lv, Yong Jiang, Hongwei Zhou,[...]. Biochem Biophys Res Commun 2018
38
26

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Gabriel A Al-Ghalith, Harriet Alexander, Eric J Alm, Manimozhiyan Arumugam, Francesco Asnicar,[...]. Nat Biotechnol 2019
10

Disruption of the Circadian Clock in Mice Increases Intestinal Permeability and Promotes Alcohol-Induced Hepatic Pathology and Inflammation.
Keith C Summa, Robin M Voigt, Christopher B Forsyth, Maliha Shaikh, Kate Cavanaugh, Yueming Tang, Martha Hotz Vitaterna, Shiwen Song, Fred W Turek, Ali Keshavarzian. PLoS One 2013
152
9


The Circadian Clock Mutation Promotes Intestinal Dysbiosis.
Robin M Voigt, Keith C Summa, Christopher B Forsyth, Stefan J Green, Phillip Engen, Ankur Naqib, Martha H Vitaterna, Fred W Turek, Ali Keshavarzian. Alcohol Clin Exp Res 2016
88
10

Circadian Rhythm and the Gut Microbiome.
R M Voigt, C B Forsyth, S J Green, P A Engen, A Keshavarzian. Int Rev Neurobiol 2016
105
9

A core gut microbiome in obese and lean twins.
Peter J Turnbaugh, Micah Hamady, Tanya Yatsunenko, Brandi L Cantarel, Alexis Duncan, Ruth E Ley, Mitchell L Sogin, William J Jones, Bruce A Roe, Jason P Affourtit,[...]. Nature 2009
9

Timing the Microbes: The Circadian Rhythm of the Gut Microbiome.
Xue Liang, Garret A FitzGerald. J Biol Rhythms 2017
59
15

QIIME allows analysis of high-throughput community sequencing data.
J Gregory Caporaso, Justin Kuczynski, Jesse Stombaugh, Kyle Bittinger, Frederic D Bushman, Elizabeth K Costello, Noah Fierer, Antonio Gonzalez Peña, Julia K Goodrich, Jeffrey I Gordon,[...]. Nat Methods 2010
9

Diet Diurnally Regulates Small Intestinal Microbiome-Epithelial-Immune Homeostasis and Enteritis.
Timur Tuganbaev, Uria Mor, Stavros Bashiardes, Timur Liwinski, Samuel Philip Nobs, Avner Leshem, Mally Dori-Bachash, Christoph A Thaiss, Elisha Y Pinker, Karina Ratiner,[...]. Cell 2020
47
19

Adverse metabolic and cardiovascular consequences of circadian misalignment.
Frank A J L Scheer, Michael F Hilton, Christos S Mantzoros, Steven A Shea. Proc Natl Acad Sci U S A 2009
9

Human Gut Bacteria Are Sensitive to Melatonin and Express Endogenous Circadian Rhythmicity.
Jiffin K Paulose, John M Wright, Akruti G Patel, Vincent M Cassone. PLoS One 2016
107
9

The microbiota coordinates diurnal rhythms in innate immunity with the circadian clock.
John F Brooks, Cassie L Behrendt, Kelly A Ruhn, Syann Lee, Prithvi Raj, Joseph S Takahashi, Lora V Hooper. Cell 2021
31
29


Resetting of circadian time in peripheral tissues by glucocorticoid signaling.
A Balsalobre, S A Brown, L Marcacci, F Tronche, C Kellendonk, H M Reichardt, G Schütz, U Schibler. Science 2000
8

Circadian clock regulates the host response to Salmonella.
Marina M Bellet, Elisa Deriu, Janet Z Liu, Benedetto Grimaldi, Christoph Blaschitz, Michael Zeller, Robert A Edwards, Saurabh Sahar, Satya Dandekar, Pierre Baldi,[...]. Proc Natl Acad Sci U S A 2013
166
8

A metagenome-wide association study of gut microbiota in type 2 diabetes.
Junjie Qin, Yingrui Li, Zhiming Cai, Shenghui Li, Jianfeng Zhu, Fan Zhang, Suisha Liang, Wenwei Zhang, Yuanlin Guan, Dongqian Shen,[...]. Nature 2012
8

When Rhythms Meet the Blues: Circadian Interactions with the Microbiota-Gut-Brain Axis.
Emily M Teichman, Kenneth J O'Riordan, Cormac G M Gahan, Timothy G Dinan, John F Cryan. Cell Metab 2020
55
14

Circadian integration of metabolism and energetics.
Joseph Bass, Joseph S Takahashi. Science 2010
8

Disruption of the clock components CLOCK and BMAL1 leads to hypoinsulinaemia and diabetes.
Biliana Marcheva, Kathryn Moynihan Ramsey, Ethan D Buhr, Yumiko Kobayashi, Hong Su, Caroline H Ko, Ganka Ivanova, Chiaki Omura, Shelley Mo, Martha H Vitaterna,[...]. Nature 2010
966
8

Gut microbiota from twins discordant for obesity modulate metabolism in mice.
Vanessa K Ridaura, Jeremiah J Faith, Federico E Rey, Jiye Cheng, Alexis E Duncan, Andrew L Kau, Nicholas W Griffin, Vincent Lombard, Bernard Henrissat, James R Bain,[...]. Science 2013
8

Circadian rhythms and the gut microbiota: from the metabolic syndrome to cancer.
Faraz Bishehsari, Robin M Voigt, Ali Keshavarzian. Nat Rev Endocrinol 2020
62
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.