A citation-based method for searching scientific literature

Jaehoon Shin, Daniel A Berg, Yunhua Zhu, Joseph Y Shin, Juan Song, Michael A Bonaguidi, Grigori Enikolopov, David W Nauen, Kimberly M Christian, Guo-li Ming, Hongjun Song. Cell Stem Cell 2015
Times Cited: 435







List of co-cited articles
1170 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing.
Hannah Hochgerner, Amit Zeisel, Peter Lönnerberg, Sten Linnarsson. Nat Neurosci 2018
150
30

Single-Cell Transcriptomics Reveals a Population of Dormant Neural Stem Cells that Become Activated upon Brain Injury.
Enric Llorens-Bobadilla, Sheng Zhao, Avni Baser, Gonzalo Saiz-Castro, Klara Zwadlo, Ana Martin-Villalba. Cell Stem Cell 2015
367
26

Adult hippocampal neurogenesis is abundant in neurologically healthy subjects and drops sharply in patients with Alzheimer's disease.
Elena P Moreno-Jiménez, Miguel Flor-García, Julia Terreros-Roncal, Alberto Rábano, Fabio Cafini, Noemí Pallas-Bazarra, Jesús Ávila, María Llorens-Martín. Nat Med 2019
600
24

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.
Cole Trapnell, Davide Cacchiarelli, Jonna Grimsby, Prapti Pokharel, Shuqiang Li, Michael Morse, Niall J Lennon, Kenneth J Livak, Tarjei S Mikkelsen, John L Rinn. Nat Biotechnol 2014
24

In vivo clonal analysis reveals self-renewing and multipotent adult neural stem cell characteristics.
Michael A Bonaguidi, Michael A Wheeler, Jason S Shapiro, Ryan P Stadel, Gerald J Sun, Guo-li Ming, Hongjun Song. Cell 2011
551
24

Live imaging of neurogenesis in the adult mouse hippocampus.
Gregor-Alexander Pilz, Sara Bottes, Marion Betizeau, David J Jörg, Stefano Carta, Benjamin D Simons, Fritjof Helmchen, Sebastian Jessberger. Science 2018
146
23

Division-coupled astrocytic differentiation and age-related depletion of neural stem cells in the adult hippocampus.
Juan M Encinas, Tatyana V Michurina, Natalia Peunova, June-Hee Park, Julie Tordo, Daniel A Peterson, Gord Fishell, Alex Koulakov, Grigori Enikolopov. Cell Stem Cell 2011
578
23

A Single-Cell RNA Sequencing Study Reveals Cellular and Molecular Dynamics of the Hippocampal Neurogenic Niche.
Benedetta Artegiani, Anna Lyubimova, Mauro Muraro, Johan H van Es, Alexander van Oudenaarden, Hans Clevers. Cell Rep 2017
102
21

Human hippocampal neurogenesis drops sharply in children to undetectable levels in adults.
Shawn F Sorrells, Mercedes F Paredes, Arantxa Cebrian-Silla, Kadellyn Sandoval, Dashi Qi, Kevin W Kelley, David James, Simone Mayer, Julia Chang, Kurtis I Auguste,[...]. Nature 2018
682
21

Single-Cell Transcriptomic Analysis Defines Heterogeneity and Transcriptional Dynamics in the Adult Neural Stem Cell Lineage.
Ben W Dulken, Dena S Leeman, Stéphane C Boutet, Katja Hebestreit, Anne Brunet. Cell Rep 2017
158
21

Human Hippocampal Neurogenesis Persists throughout Aging.
Maura Boldrini, Camille A Fulmore, Alexandria N Tartt, Laika R Simeon, Ina Pavlova, Verica Poposka, Gorazd B Rosoklija, Aleksandar Stankov, Victoria Arango, Andrew J Dwork,[...]. Cell Stem Cell 2018
622
18

Quiescence of Adult Mammalian Neural Stem Cells: A Highly Regulated Rest.
Noelia Urbán, Isabelle Maria Blomfield, François Guillemot. Neuron 2019
72
25

Adult Neurogenesis in the Hippocampus: From Stem Cells to Behavior.
J Tiago Gonçalves, Simon T Schafer, Fred H Gage. Cell 2016
553
17

A Fatty Acid Oxidation-Dependent Metabolic Shift Regulates Adult Neural Stem Cell Activity.
Marlen Knobloch, Gregor-Alexander Pilz, Bart Ghesquière, Werner J Kovacs, Thomas Wegleiter, Darcie L Moore, Martina Hruzova, Nicola Zamboni, Peter Carmeliet, Sebastian Jessberger. Cell Rep 2017
139
17

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
16

A Common Embryonic Origin of Stem Cells Drives Developmental and Adult Neurogenesis.
Daniel A Berg, Yijing Su, Dennisse Jimenez-Cyrus, Aneek Patel, Nancy Huang, David Morizet, Stephanie Lee, Reeti Shah, Francisca Rojas Ringeling, Rajan Jain,[...]. Cell 2019
85
18

Return to quiescence of mouse neural stem cells by degradation of a proactivation protein.
Noelia Urbán, Debbie L C van den Berg, Antoine Forget, Jimena Andersen, Jeroen A A Demmers, Charles Hunt, Olivier Ayrault, François Guillemot. Science 2016
122
16

Neurogenesis in the adult human hippocampus.
P S Eriksson, E Perfilieva, T Björk-Eriksson, A M Alborn, C Nordborg, D A Peterson, F H Gage. Nat Med 1998
16

Reversed graph embedding resolves complex single-cell trajectories.
Xiaojie Qiu, Qi Mao, Ying Tang, Li Wang, Raghav Chawla, Hannah A Pliner, Cole Trapnell. Nat Methods 2017
16

Adult Mammalian Neural Stem Cells and Neurogenesis: Five Decades Later.
Allison M Bond, Guo-Li Ming, Hongjun Song. Cell Stem Cell 2015
414
15

Neuronal circuitry mechanism regulating adult quiescent neural stem-cell fate decision.
Juan Song, Chun Zhong, Michael A Bonaguidi, Gerald J Sun, Derek Hsu, Yan Gu, Konstantinos Meletis, Z Josh Huang, Shaoyu Ge, Grigori Enikolopov,[...]. Nature 2012
340
15

Metabolic control of adult neural stem cell activity by Fasn-dependent lipogenesis.
Marlen Knobloch, Simon M G Braun, Luis Zurkirchen, Carolin von Schoultz, Nicola Zamboni, Marcos J Araúzo-Bravo, Werner J Kovacs, Ozlem Karalay, Ueli Suter, Raquel A C Machado,[...]. Nature 2013
302
15

Human Adult Neurogenesis: Evidence and Remaining Questions.
Gerd Kempermann, Fred H Gage, Ludwig Aigner, Hongjun Song, Maurice A Curtis, Sandrine Thuret, H Georg Kuhn, Sebastian Jessberger, Paul W Frankland, Heather A Cameron,[...]. Cell Stem Cell 2018
372
15

Dynamics of hippocampal neurogenesis in adult humans.
Kirsty L Spalding, Olaf Bergmann, Kanar Alkass, Samuel Bernard, Mehran Salehpour, Hagen B Huttner, Emil Boström, Isabelle Westerlund, Celine Vial, Bruce A Buchholz,[...]. Cell 2013
15

Human Hippocampal Neurogenesis Persists in Aged Adults and Alzheimer's Disease Patients.
Matthew K Tobin, Kianna Musaraca, Ahmed Disouky, Aashutosh Shetti, Abdullah Bheri, William G Honer, Namhee Kim, Robert J Dawe, David A Bennett, Konstantinos Arfanakis,[...]. Cell Stem Cell 2019
215
15

Long-term self-renewing stem cells in the adult mouse hippocampus identified by intravital imaging.
Sara Bottes, Baptiste N Jaeger, Gregor-Alexander Pilz, David J Jörg, John Darby Cole, Merit Kruse, Lachlan Harris, Vladislav I Korobeynyk, Izaskun Mallona, Fritjof Helmchen,[...]. Nat Neurosci 2021
33
45

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.
Kelly Street, Davide Risso, Russell B Fletcher, Diya Das, John Ngai, Nir Yosef, Elizabeth Purdom, Sandrine Dudoit. BMC Genomics 2018
481
14

Coordinated changes in cellular behavior ensure the lifelong maintenance of the hippocampal stem cell population.
Lachlan Harris, Piero Rigo, Thomas Stiehl, Zachary B Gaber, Sophie H L Austin, Maria Del Mar Masdeu, Amelia Edwards, Noelia Urbán, Anna Marciniak-Czochra, François Guillemot. Cell Stem Cell 2021
29
48

Epigenomic enhancer annotation reveals a key role for NFIX in neural stem cell quiescence.
Ben Martynoga, Juan L Mateo, Bo Zhou, Jimena Andersen, Angeliki Achimastou, Noelia Urbán, Debbie van den Berg, Dimitra Georgopoulou, Suzana Hadjur, Joachim Wittbrodt,[...]. Genes Dev 2013
117
13

Signaling through BMPR-IA regulates quiescence and long-term activity of neural stem cells in the adult hippocampus.
Helena Mira, Zoraida Andreu, Hoonkyo Suh, D Chichung Lie, Sebastian Jessberger, Antonella Consiglio, Juana San Emeterio, Rafael Hortigüela, María Angeles Marqués-Torrejón, Kinichi Nakashima,[...]. Cell Stem Cell 2010
316
13

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
13

Role of Mitochondrial Metabolism in the Control of Early Lineage Progression and Aging Phenotypes in Adult Hippocampal Neurogenesis.
Ruth Beckervordersandforth, Birgit Ebert, Iris Schäffner, Jonathan Moss, Christian Fiebig, Jaehoon Shin, Darcie L Moore, Laboni Ghosh, Mariela F Trinchero, Carola Stockburger,[...]. Neuron 2017
131
13


Murine features of neurogenesis in the human hippocampus across the lifespan from 0 to 100 years.
Rolf Knoth, Ilyas Singec, Margarethe Ditter, Georgios Pantazis, Philipp Capetian, Ralf P Meyer, Volker Horvat, Benedikt Volk, Gerd Kempermann. PLoS One 2010
427
13

A comparison of single-cell trajectory inference methods.
Wouter Saelens, Robrecht Cannoodt, Helena Todorov, Yvan Saeys. Nat Biotechnol 2019
400
13


A transcriptional mechanism integrating inputs from extracellular signals to activate hippocampal stem cells.
Jimena Andersen, Noelia Urbán, Angeliki Achimastou, Ayako Ito, Milesa Simic, Kristy Ullom, Ben Martynoga, Mélanie Lebel, Christian Göritz, Jonas Frisén,[...]. Neuron 2014
123
12

Wishbone identifies bifurcating developmental trajectories from single-cell data.
Manu Setty, Michelle D Tadmor, Shlomit Reich-Zeliger, Omer Angel, Tomer Meir Salame, Pooja Kathail, Kristy Choi, Sean Bendall, Nir Friedman, Dana Pe'er. Nat Biotechnol 2016
300
12

Embryonic Origin of Postnatal Neural Stem Cells.
Luis C Fuentealba, Santiago B Rompani, Jose I Parraguez, Kirsten Obernier, Ricardo Romero, Constance L Cepko, Arturo Alvarez-Buylla. Cell 2015
265
12


Lysosome activation clears aggregates and enhances quiescent neural stem cell activation during aging.
Dena S Leeman, Katja Hebestreit, Tyson Ruetz, Ashley E Webb, Andrew McKay, Elizabeth A Pollina, Ben W Dulken, Xiaoai Zhao, Robin W Yeo, Theodore T Ho,[...]. Science 2018
200
12

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
12

Id4 promotes the elimination of the pro-activation factor Ascl1 to maintain quiescence of adult hippocampal stem cells.
Isabelle Maria Blomfield, Brenda Rocamonde, Maria Del Mar Masdeu, Eskeatnaf Mulugeta, Stefania Vaga, Debbie Lc van den Berg, Emmanuelle Huillard, François Guillemot, Noelia Urbán. Elife 2019
31
35

RNA velocity of single cells.
Gioele La Manno, Ruslan Soldatov, Amit Zeisel, Emelie Braun, Hannah Hochgerner, Viktor Petukhov, Katja Lidschreiber, Maria E Kastriti, Peter Lönnerberg, Alessandro Furlan,[...]. Nature 2018
938
11

Massively parallel digital transcriptional profiling of single cells.
Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu,[...]. Nat Commun 2017
11

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
11

Quiescence Modulates Stem Cell Maintenance and Regenerative Capacity in the Aging Brain.
Georgios Kalamakis, Daniel Brüne, Srikanth Ravichandran, Jan Bolz, Wenqiang Fan, Frederik Ziebell, Thomas Stiehl, Francisco Catalá-Martinez, Janina Kupke, Sheng Zhao,[...]. Cell 2019
118
11

Diffusion pseudotime robustly reconstructs lineage branching.
Laleh Haghverdi, Maren Büttner, F Alexander Wolf, Florian Buettner, Fabian J Theis. Nat Methods 2016
421
11

Dimensionality reduction for visualizing single-cell data using UMAP.
Etienne Becht, Leland McInnes, John Healy, Charles-Antoine Dutertre, Immanuel W H Kwok, Lai Guan Ng, Florent Ginhoux, Evan W Newell. Nat Biotechnol 2018
11

Subventricular zone astrocytes are neural stem cells in the adult mammalian brain.
F Doetsch, I Caillé, D A Lim, J M García-Verdugo, A Alvarez-Buylla. Cell 1999
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.