A citation-based method for searching scientific literature

Christian Kukat, Karen M Davies, Christian A Wurm, Henrik Spåhr, Nina A Bonekamp, Inge Kühl, Friederike Joos, Paola Loguercio Polosa, Chan Bae Park, Viktor Posse, Maria Falkenberg, Stefan Jakobs, Werner Kühlbrandt, Nils-Göran Larsson. Proc Natl Acad Sci U S A 2015
Times Cited: 168







List of co-cited articles
1788 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Super-resolution microscopy reveals that mammalian mitochondrial nucleoids have a uniform size and frequently contain a single copy of mtDNA.
Christian Kukat, Christian A Wurm, Henrik Spåhr, Maria Falkenberg, Nils-Göran Larsson, Stefan Jakobs. Proc Natl Acad Sci U S A 2011
299
46

Maintenance and Expression of Mammalian Mitochondrial DNA.
Claes M Gustafsson, Maria Falkenberg, Nils-Göran Larsson. Annu Rev Biochem 2016
266
39


The mitochondrial transcription factor TFAM coordinates the assembly of multiple DNA molecules into nucleoid-like structures.
Brett A Kaufman, Nela Durisic, Jeffrey M Mativetsky, Santiago Costantino, Mark A Hancock, Peter Grutter, Eric A Shoubridge. Mol Biol Cell 2007
261
25

Superresolution fluorescence imaging of mitochondrial nucleoids reveals their spatial range, limits, and membrane interaction.
Timothy A Brown, Ariana N Tkachuk, Gleb Shtengel, Benjamin G Kopek, Daniel F Bogenhagen, Harald F Hess, David A Clayton. Mol Cell Biol 2011
159
24

Distinct structural features of TFAM drive mitochondrial DNA packaging versus transcriptional activation.
Huu B Ngo, Geoffrey A Lovely, Rob Phillips, David C Chan. Nat Commun 2014
115
24

Sequence and organization of the human mitochondrial genome.
S Anderson, A T Bankier, B G Barrell, M H de Bruijn, A R Coulson, J Drouin, I C Eperon, D P Nierlich, B A Roe, F Sanger,[...]. Nature 1981
22

Mitochondrial transcription factor A regulates mtDNA copy number in mammals.
Mats I Ekstrand, Maria Falkenberg, Anja Rantanen, Chan Bae Park, Martina Gaspari, Kjell Hultenby, Pierre Rustin, Claes M Gustafsson, Nils-Göran Larsson. Hum Mol Genet 2004
571
21

The layered structure of human mitochondrial DNA nucleoids.
Daniel F Bogenhagen, Denis Rousseau, Stephanie Burke. J Biol Chem 2008
302
19

Human mitochondrial transcription factor A induces a U-turn structure in the light strand promoter.
Anna Rubio-Cosials, Jasmin F Sidow, Nereida Jiménez-Menéndez, Pablo Fernández-Millán, Julio Montoya, Howard T Jacobs, Miquel Coll, Pau Bernadó, Maria Solà. Nat Struct Mol Biol 2011
121
18

Organization and dynamics of human mitochondrial DNA.
Frédéric Legros, Florence Malka, Paule Frachon, Anne Lombès, Manuel Rojo. J Cell Sci 2004
261
18

In vitro-reconstituted nucleoids can block mitochondrial DNA replication and transcription.
Géraldine Farge, Majda Mehmedovic, Marian Baclayon, Siet M J L van den Wildenberg, Wouter H Roos, Claes M Gustafsson, Gijs J L Wuite, Maria Falkenberg. Cell Rep 2014
55
32

Phosphorylation of human TFAM in mitochondria impairs DNA binding and promotes degradation by the AAA+ Lon protease.
Bin Lu, Jae Lee, Xiaobo Nie, Min Li, Yaroslav I Morozov, Sundararajan Venkatesh, Daniel F Bogenhagen, Dmitry Temiakov, Carolyn K Suzuki. Mol Cell 2013
173
16

ER-mitochondria contacts couple mtDNA synthesis with mitochondrial division in human cells.
Samantha C Lewis, Lauren F Uchiyama, Jodi Nunnari. Science 2016
272
16

Mitochondrial transcription factor A is necessary for mtDNA maintenance and embryogenesis in mice.
N G Larsson, J Wang, H Wilhelmsson, A Oldfors, P Rustin, M Lewandoski, G S Barsh, D A Clayton. Nat Genet 1998
16

Mitochondria: in sickness and in health.
Jodi Nunnari, Anu Suomalainen. Cell 2012
15

Human mitochondrial DNA is packaged with TFAM.
Tanfis Istiaq Alam, Tomotake Kanki, Tsuyoshi Muta, Koutarou Ukaji, Yoshito Abe, Hiroshi Nakayama, Koji Takio, Naotaka Hamasaki, Dongchon Kang. Nucleic Acids Res 2003
249
15

Structural Basis of Mitochondrial Transcription Initiation.
Hauke S Hillen, Yaroslav I Morozov, Azadeh Sarfallah, Dmitry Temiakov, Patrick Cramer. Cell 2017
62
24

Mitochondrial DNA nucleoid structure.
Daniel F Bogenhagen. Biochim Biophys Acta 2012
162
14

Acetylation and phosphorylation of human TFAM regulate TFAM-DNA interactions via contrasting mechanisms.
Graeme A King, Maryam Hashemi Shabestari, Kees-Karel H Taris, Ashutosh K Pandey, Sundararajan Venkatesh, Jayapalraja Thilagavathi, Kamalendra Singh, Rama Krishna Koppisetti, Dmitry Temiakov, Wouter H Roos,[...]. Nucleic Acids Res 2018
29
44

BAK/BAX macropores facilitate mitochondrial herniation and mtDNA efflux during apoptosis.
Kate McArthur, Lachlan W Whitehead, John M Heddleston, Lucy Li, Benjamin S Padman, Viola Oorschot, Niall D Geoghegan, Stephane Chappaz, Sophia Davidson, Hui San Chin,[...]. Science 2018
256
13


Composition and dynamics of human mitochondrial nucleoids.
Nuria Garrido, Lorena Griparic, Eija Jokitalo, Jorma Wartiovaara, Alexander M van der Bliek, Johannes N Spelbrink. Mol Biol Cell 2003
246
12

MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins.
Sarah E Calvo, Karl R Clauser, Vamsi K Mootha. Nucleic Acids Res 2016
752
12

Mitochondrial biology. Replication-transcription switch in human mitochondria.
Karen Agaronyan, Yaroslav I Morozov, Michael Anikin, Dmitry Temiakov. Science 2015
97
12

The functional organization of mitochondrial genomes in human cells.
Francisco J Iborra, Hiroshi Kimura, Peter R Cook. BMC Biol 2004
213
12

Topoisomerase 3α Is Required for Decatenation and Segregation of Human mtDNA.
Thomas J Nicholls, Cristina A Nadalutti, Elisa Motori, Ewen W Sommerville, Gráinne S Gorman, Swaraj Basu, Emily Hoberg, Doug M Turnbull, Patrick F Chinnery, Nils-Göran Larsson,[...]. Mol Cell 2018
53
22

Proximity Biotinylation as a Method for Mapping Proteins Associated with mtDNA in Living Cells.
Shuo Han, Namrata D Udeshi, Thomas J Deerinck, Tanya Svinkina, Mark H Ellisman, Steven A Carr, Alice Y Ting. Cell Chem Biol 2017
59
20

Reconstitution of a minimal mtDNA replisome in vitro.
Jenny A Korhonen, Xuan Hoi Pham, Mina Pellegrini, Maria Falkenberg. EMBO J 2004
257
11

Mammalian transcription factor A is a core component of the mitochondrial transcription machinery.
Yonghong Shi, Anke Dierckx, Paulina H Wanrooij, Sjoerd Wanrooij, Nils-Göran Larsson, L Marcus Wilhelmsson, Maria Falkenberg, Claes M Gustafsson. Proc Natl Acad Sci U S A 2012
103
11

Correlative 3D superresolution fluorescence and electron microscopy reveal the relationship of mitochondrial nucleoids to membranes.
Benjamin G Kopek, Gleb Shtengel, C Shan Xu, David A Clayton, Harald F Hess. Proc Natl Acad Sci U S A 2012
151
11


Base-excision repair deficiency alone or combined with increased oxidative stress does not increase mtDNA point mutations in mice.
Johanna H K Kauppila, Nina A Bonekamp, Arnaud Mourier, Marita A Isokallio, Alexandra Just, Timo E S Kauppila, James B Stewart, Nils-Göran Larsson. Nucleic Acids Res 2018
33
33

Protein sliding and DNA denaturation are essential for DNA organization by human mitochondrial transcription factor A.
Géraldine Farge, Niels Laurens, Onno D Broekmans, Siet M J L van den Wildenberg, Linda C M Dekker, Martina Gaspari, Claes M Gustafsson, Erwin J G Peterman, Maria Falkenberg, Gijs J L Wuite. Nat Commun 2012
68
16


Dynamics of nucleoid structure regulated by mitochondrial fission contributes to cristae reformation and release of cytochrome c.
Reiko Ban-Ishihara, Takaya Ishihara, Narie Sasaki, Katsuyoshi Mihara, Naotada Ishihara. Proc Natl Acad Sci U S A 2013
122
11


Human mitochondrial RNA polymerase primes lagging-strand DNA synthesis in vitro.
Sjoerd Wanrooij, Javier Miralles Fusté, Géraldine Farge, Yonghong Shi, Claes M Gustafsson, Maria Falkenberg. Proc Natl Acad Sci U S A 2008
117
10

The maintenance of mitochondrial DNA integrity--critical analysis and update.
Mikhail Alexeyev, Inna Shokolenko, Glenn Wilson, Susan LeDoux. Cold Spring Harb Perspect Biol 2013
245
10


Fission and selective fusion govern mitochondrial segregation and elimination by autophagy.
Gilad Twig, Alvaro Elorza, Anthony J A Molina, Hibo Mohamed, Jakob D Wikstrom, Gil Walzer, Linsey Stiles, Sarah E Haigh, Steve Katz, Guy Las,[...]. EMBO J 2008
10

Mitochondrially targeted ZFNs for selective degradation of pathogenic mitochondrial genomes bearing large-scale deletions or point mutations.
Payam A Gammage, Joanna Rorbach, Anna I Vincent, Edward J Rebar, Michal Minczuk. EMBO Mol Med 2014
138
10

High levels of mitochondrial DNA deletions in substantia nigra neurons in aging and Parkinson disease.
Andreas Bender, Kim J Krishnan, Christopher M Morris, Geoffrey A Taylor, Amy K Reeve, Robert H Perry, Evelyn Jaros, Joshua S Hersheson, Joanne Betts, Thomas Klopstock,[...]. Nat Genet 2006
982
10


Premature ageing in mice expressing defective mitochondrial DNA polymerase.
Aleksandra Trifunovic, Anna Wredenberg, Maria Falkenberg, Johannes N Spelbrink, Anja T Rovio, Carl E Bruder, Mohammad Bohlooly-Y, Sebastian Gidlöf, Anders Oldfors, Rolf Wibom,[...]. Nature 2004
10

Mechanism of Transcription Anti-termination in Human Mitochondria.
Hauke S Hillen, Andrey V Parshin, Karen Agaronyan, Yaroslav I Morozov, James J Graber, Aleksandar Chernev, Kathrin Schwinghammer, Henning Urlaub, Michael Anikin, Patrick Cramer,[...]. Cell 2017
38
26

Mitochondrial DNA stress primes the antiviral innate immune response.
A Phillip West, William Khoury-Hanold, Matthew Staron, Michal C Tal, Cristiana M Pineda, Sabine M Lang, Megan Bestwick, Brett A Duguay, Nuno Raimundo, Donna A MacDuff,[...]. Nature 2015
709
10

In D-loop: 40 years of mitochondrial 7S DNA.
Thomas J Nicholls, Michal Minczuk. Exp Gerontol 2014
120
10

Human mitochondrial DNA replication machinery and disease.
Matthew J Young, William C Copeland. Curr Opin Genet Dev 2016
102
10

Mitochondrial RNA polymerase is needed for activation of the origin of light-strand DNA replication.
Javier Miralles Fusté, Sjoerd Wanrooij, Elisabeth Jemt, Caroline E Granycome, Tricia J Cluett, Yonghong Shi, Neli Atanassova, Ian J Holt, Claes M Gustafsson, Maria Falkenberg. Mol Cell 2010
124
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.