A citation-based method for searching scientific literature

Miriam J Henze, Todd H Oakley. Integr Comp Biol 2015
Times Cited: 58







List of co-cited articles
592 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Extraordinary diversity of visual opsin genes in dragonflies.
Ryo Futahashi, Ryouka Kawahara-Miki, Michiyo Kinoshita, Kazutoshi Yoshitake, Shunsuke Yajima, Kentaro Arikawa, Takema Fukatsu. Proc Natl Acad Sci U S A 2015
93
39

Shedding new light on opsin evolution.
Megan L Porter, Joseph R Blasic, Michael J Bok, Evan G Cameron, Thomas Pringle, Thomas W Cronin, Phyllis R Robinson. Proc Biol Sci 2012
161
36

The evolution of color vision in insects.
A D Briscoe, L Chittka. Annu Rev Entomol 2001
575
31

Pteropsin: a vertebrate-like non-visual opsin expressed in the honey bee brain.
Rodrigo A Velarde, Colin D Sauer, Kimberly K O Walden, Susan E Fahrbach, Hugh M Robertson. Insect Biochem Mol Biol 2005
97
27

The ecoresponsive genome of Daphnia pulex.
John K Colbourne, Michael E Pfrender, Donald Gilbert, W Kelley Thomas, Abraham Tucker, Todd H Oakley, Shinichi Tokishita, Andrea Aerts, Georg J Arnold, Malay Kumar Basu,[...]. Science 2011
791
24

Metazoan opsin evolution reveals a simple route to animal vision.
Roberto Feuda, Sinead C Hamilton, James O McInerney, Davide Pisani. Proc Natl Acad Sci U S A 2012
111
22

Conservation, Duplication, and Divergence of Five Opsin Genes in Insect Evolution.
Roberto Feuda, Ferdinand Marlétaz, Michael A Bentley, Peter W H Holland. Genome Biol Evol 2016
41
31

Full-length transcriptome assembly from RNA-Seq data without a reference genome.
Manfred G Grabherr, Brian J Haas, Moran Yassour, Joshua Z Levin, Dawn A Thompson, Ido Amit, Xian Adiconis, Lin Fan, Raktima Raychowdhury, Qiandong Zeng,[...]. Nat Biotechnol 2011
20

Characterisation and localisation of the opsin protein repertoire in the brain and retinas of a spider and an onychophoran.
Bo Joakim Eriksson, David Fredman, Gerhard Steiner, Axel Schmid. BMC Evol Biol 2013
37
32

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
Lam-Tung Nguyen, Heiko A Schmidt, Arndt von Haeseler, Bui Quang Minh. Mol Biol Evol 2015
20

The evolution of complexity in the visual systems of stomatopods: insights from transcriptomics.
Megan L Porter, Daniel I Speiser, Alexander K Zaharoff, Roy L Caldwell, Thomas W Cronin, Todd H Oakley. Integr Comp Biol 2013
30
36

Molecular characterization of visual pigments in Branchiopoda and the evolution of opsins in Arthropoda.
Kazuyuki Kashiyama, Takaharu Seki, Hideharu Numata, Shin G Goto. Mol Biol Evol 2009
26
42


The Last Common Ancestor of Most Bilaterian Animals Possessed at Least Nine Opsins.
M Desmond Ramirez, Autum N Pairett, M Sabrina Pankey, Jeanne M Serb, Daniel I Speiser, Andrew J Swafford, Todd H Oakley. Genome Biol Evol 2016
67
18

Molecular characterization of crustacean visual pigments and the evolution of pancrustacean opsins.
Megan L Porter, Thomas W Cronin, David A McClellan, Keith A Crandall. Mol Biol Evol 2007
56
17


Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.
Daniel I Speiser, M Sabrina Pankey, Alexander K Zaharoff, Barbara A Battelle, Heather D Bracken-Grissom, Jesse W Breinholt, Seth M Bybee, Thomas W Cronin, Anders Garm, Annie R Lindgren,[...]. BMC Bioinformatics 2014
44
22

The opsins.
Akihisa Terakita. Genome Biol 2005
334
15



Molecular diversity of visual pigments in Stomatopoda (Crustacea).
Megan L Porter, Michael J Bok, Phyllis R Robinson, Thomas W Cronin. Vis Neurosci 2009
44
20

Opsin evolution and expression in arthropod compound eyes and ocelli: insights from the cricket Gryllus bimaculatus.
Miriam J Henze, Kara Dannenhauer, Martin Kohler, Thomas Labhart, Matthias Gesemann. BMC Evol Biol 2012
45
20

Eye evolution and its functional basis.
Dan-E Nilsson. Vis Neurosci 2013
97
15

A cure for the blues: opsin duplication and subfunctionalization for short-wavelength sensitivity in jewel beetles (Coleoptera: Buprestidae).
Nathan P Lord, Rebecca L Plimpton, Camilla R Sharkey, Anton Suvorov, Jonathan P Lelito, Barry M Willardson, Seth M Bybee. BMC Evol Biol 2016
24
37

Biological sunscreens tune polychromatic ultraviolet vision in mantis shrimp.
Michael J Bok, Megan L Porter, Allen R Place, Thomas W Cronin. Curr Biol 2014
39
23

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.
Stéphane Guindon, Jean-François Dufayard, Vincent Lefort, Maria Anisimova, Wim Hordijk, Olivier Gascuel. Syst Biol 2010
15

Opsin Repertoire and Expression Patterns in Horseshoe Crabs: Evidence from the Genome of Limulus polyphemus (Arthropoda: Chelicerata).
Barbara-Anne Battelle, Joseph F Ryan, Karen E Kempler, Spencer R Saraf, Catherine E Marten, Wesley C Warren, Patrick J Minx, Michael J Montague, Pamela J Green, Skye A Schmidt,[...]. Genome Biol Evol 2016
32
28

Two opsins from the compound eye of the crab Hemigrapsus sanguineus
Sakamoto, Hisatomi, Tokunaga, Eguchi. J Exp Biol 1996
31
29

Overcoming the loss of blue sensitivity through opsin duplication in the largest animal group, beetles.
Camilla R Sharkey, M Stanley Fujimoto, Nathan P Lord, Seunggwan Shin, Duane D McKenna, Anton Suvorov, Gavin J Martin, Seth M Bybee. Sci Rep 2017
56
16


Opsins in Limulus eyes: characterization of three visible light-sensitive opsins unique to and co-expressed in median eye photoreceptors and a peropsin/RGR that is expressed in all eyes.
Barbara-Anne Battelle, Karen E Kempler, Spencer R Saraf, Catherine E Marten, Donald R Dugger, Daniel I Speiser, Todd H Oakley. J Exp Biol 2015
13
61

Identification and characterization of a protostome homologue of peropsin from a jumping spider.
Takashi Nagata, Mitsumasa Koyanagi, Hisao Tsukamoto, Akihisa Terakita. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2010
33
24


BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
Felipe A Simão, Robert M Waterhouse, Panagiotis Ioannidis, Evgenia V Kriventseva, Evgeny M Zdobnov. Bioinformatics 2015
13

Opsins in onychophora (velvet worms) suggest a single origin and subsequent diversification of visual pigments in arthropods.
Lars Hering, Miriam J Henze, Martin Kohler, Almut Kelber, Christoph Bleidorn, Maren Leschke, Birgit Nickel, Matthias Meyer, Martin Kircher, Paul Sunnucks,[...]. Mol Biol Evol 2012
41
19

Phylogenomics resolves the timing and pattern of insect evolution.
Bernhard Misof, Shanlin Liu, Karen Meusemann, Ralph S Peters, Alexander Donath, Christoph Mayer, Paul B Frandsen, Jessica Ware, Tomáš Flouri, Rolf G Beutel,[...]. Science 2014
12


Opsin co-expression in Limulus photoreceptors: differential regulation by light and a circadian clock.
C Katti, K Kempler, M L Porter, A Legg, R Gonzalez, E Garcia-Rivera, D Dugger, B-A Battelle. J Exp Biol 2010
33
21


Evolution and expression plasticity of opsin genes in a fig pollinator, Ceratosolen solmsi.
Bo Wang, Jin-Hua Xiao, Sheng-Nan Bian, Li-Ming Niu, Robert W Murphy, Da-Wei Huang. PLoS One 2013
20
35


UFBoot2: Improving the Ultrafast Bootstrap Approximation.
Diep Thi Hoang, Olga Chernomor, Arndt von Haeseler, Bui Quang Minh, Le Sy Vinh. Mol Biol Evol 2018
12

The comb jelly opsins and the origins of animal phototransduction.
Roberto Feuda, Omar Rota-Stabelli, Todd H Oakley, Davide Pisani. Genome Biol Evol 2014
39
15

Evolution of opsins and phototransduction.
Yoshinori Shichida, Take Matsuyama. Philos Trans R Soc Lond B Biol Sci 2009
224
10

Short- and long-wavelength-sensitive opsins are involved in photoreception both in the retina and throughout the central nervous system of crayfish.
Alexandra C N Kingston, Thomas W Cronin. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2015
14
42

Positive selection of a duplicated UV-sensitive visual pigment coincides with wing pigment evolution in Heliconius butterflies.
Adriana D Briscoe, Seth M Bybee, Gary D Bernard, Furong Yuan, Marilou P Sison-Mangus, Robert D Reed, Andrew D Warren, Jorge Llorente-Bousquets, Chuan-Chin Chiao. Proc Natl Acad Sci U S A 2010
92
10

Color discrimination with broadband photoreceptors.
Christopher Schnaitmann, Christian Garbers, Thomas Wachtler, Hiromu Tanimoto. Curr Biol 2013
88
10



Receptor noise as a determinant of colour thresholds.
M Vorobyev, D Osorio. Proc Biol Sci 1998
556
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.